Wall clock time and date at job start Tue Mar 31 2020 05:53:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31424 * 1 3 3 Si 1.86809 * 119.99639 * 2 1 4 4 H 1.48496 * 109.46676 * 240.00081 * 3 2 1 5 5 H 1.48499 * 109.46870 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47287 * 120.00190 * 3 2 1 7 7 C 1.38794 * 120.00725 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00030 * 180.02562 * 7 2 1 9 9 O 1.34861 * 119.99535 * 0.02562 * 7 2 1 10 10 C 1.34774 * 117.00137 * 180.02562 * 9 7 2 11 11 O 1.21542 * 119.99842 * 359.97438 * 10 9 7 12 12 C 1.47348 * 120.00294 * 179.97438 * 10 9 7 13 13 C 1.39801 * 120.20086 * 359.97438 * 12 10 9 14 14 C 1.37754 * 119.90314 * 179.97438 * 13 12 10 15 15 C 1.38574 * 120.30822 * 359.97438 * 14 13 12 16 16 C 1.38073 * 120.40768 * 359.97438 * 15 14 13 17 17 C 1.38689 * 120.09144 * 0.27858 * 16 15 14 18 18 O 1.35644 * 120.15368 * 179.74240 * 17 16 15 19 19 C 1.42905 * 117.00148 * 359.97438 * 18 17 16 20 20 C 1.50694 * 109.47185 * 179.97438 * 19 18 17 21 21 C 1.38272 * 119.99468 * 269.73040 * 20 19 18 22 22 C 1.38217 * 120.01718 * 179.72580 * 21 20 19 23 23 C 1.38242 * 120.01218 * 0.54567 * 22 21 20 24 24 C 1.38306 * 119.99042 * 359.72989 * 23 22 21 25 25 Br 1.89092 * 120.01134 * 180.02562 * 24 23 22 26 26 C 1.38197 * 119.99569 * 90.00305 * 20 19 18 27 27 H 0.96994 * 120.00589 * 359.97438 * 1 2 3 28 28 H 1.08002 * 120.04750 * 359.95580 * 13 12 10 29 29 H 1.07998 * 119.85037 * 180.02562 * 14 13 12 30 30 H 1.07991 * 119.79705 * 180.02562 * 15 14 13 31 31 H 1.08002 * 119.95026 * 179.97438 * 16 15 14 32 32 H 1.08990 * 109.47181 * 300.00236 * 19 18 17 33 33 H 1.09004 * 109.46527 * 60.00261 * 19 18 17 34 34 H 1.07996 * 119.98949 * 0.02562 * 21 20 19 35 35 H 1.07998 * 119.99462 * 180.27245 * 22 21 20 36 36 H 1.08000 * 120.00586 * 179.74077 * 23 22 21 37 37 H 1.07996 * 120.00371 * 359.97438 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6179 0.0000 4 1 3.1018 1.6965 -1.2125 5 1 1.2831 2.7465 -0.0006 6 1 3.1020 1.6966 1.2124 7 6 2.0084 -1.2019 0.0005 8 1 3.0883 -1.2018 0.0010 9 8 1.3341 -2.3699 0.0005 10 6 2.0682 -3.5002 0.0016 11 8 3.2819 -3.4365 0.0021 12 6 1.3993 -4.8131 0.0023 13 6 0.0035 -4.8913 0.0023 14 6 -0.6154 -6.1219 0.0024 15 6 0.1392 -7.2842 0.0018 16 6 1.5185 -7.2219 0.0007 17 6 2.1590 -5.9918 0.0060 18 8 3.5140 -5.9291 0.0102 19 6 4.2209 -7.1711 0.0095 20 6 5.7042 -6.9048 0.0139 21 6 6.3887 -6.7858 -1.1816 22 6 7.7480 -6.5359 -1.1782 23 6 8.4260 -6.4161 0.0206 24 6 7.7428 -6.5408 1.2167 25 35 8.6695 -6.3763 2.8568 26 6 6.3811 -6.7852 1.2128 27 1 -0.4851 0.8399 0.0004 28 1 -0.5887 -3.9881 0.0026 29 1 -1.6938 -6.1813 0.0020 30 1 -0.3546 -8.2446 0.0015 31 1 2.0994 -8.1324 0.0008 32 1 3.9515 -7.7430 0.8973 33 1 3.9567 -7.7389 -0.8827 34 1 5.8601 -6.8833 -2.1183 35 1 8.2815 -6.4387 -2.1122 36 1 9.4890 -6.2251 0.0232 37 1 5.8471 -6.8822 2.1464 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005583239.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:48 Heat of formation + Delta-G solvation = -56.193451 kcal Electronic energy + Delta-G solvation = -24591.272219 eV Core-core repulsion = 20731.851158 eV Total energy + Delta-G solvation = -3859.421061 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 376.014 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.27778 -39.40477 -38.41874 -37.04231 -34.95583 -32.91073 -32.12729 -32.02530 -30.96012 -29.69068 -29.36411 -26.70622 -25.50829 -23.42374 -22.73167 -22.29731 -21.13179 -20.19954 -18.00436 -17.62639 -17.12599 -16.73611 -16.20060 -15.85126 -15.16308 -14.93569 -14.85922 -14.40141 -14.24547 -14.21253 -13.90535 -13.67333 -13.49179 -13.36094 -12.54029 -12.39992 -12.34902 -11.67336 -11.52109 -11.43832 -11.29063 -11.14555 -11.10314 -10.86677 -10.83990 -10.44930 -10.43322 -10.34167 -9.76675 -9.16687 -8.89109 -8.84383 -8.73528 -8.52530 -7.98611 -6.38650 -4.00894 0.86434 1.03058 1.23805 1.44397 1.65407 3.11158 3.19134 3.21522 3.25701 3.55476 3.75597 3.97287 4.36734 4.44228 4.55861 4.56401 4.80076 4.92330 4.97456 4.98359 5.10498 5.19419 5.21738 5.25019 5.39144 5.51136 5.56297 5.65914 5.84892 5.95532 6.06216 6.09086 6.25729 6.28692 6.54148 6.56827 6.70115 6.95978 7.02072 7.42856 7.64033 8.00685 8.81928 9.10802 9.94116 10.79679 Molecular weight = 376.01amu Principal moments of inertia in cm(-1) A = 0.008000 B = 0.002874 C = 0.002305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3499.375646 B = 9740.057636 C =12144.118982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.041 3.959 3 Si 0.943 3.057 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.270 1.270 7 C -0.371 4.371 8 H 0.095 0.905 9 O -0.212 6.212 10 C 0.436 3.564 11 O -0.532 6.532 12 C -0.122 4.122 13 C -0.033 4.033 14 C -0.171 4.171 15 C -0.068 4.068 16 C -0.228 4.228 17 C 0.172 3.828 18 O -0.268 6.268 19 C 0.094 3.906 20 C -0.080 4.080 21 C -0.076 4.076 22 C -0.117 4.117 23 C -0.084 4.084 24 C -0.093 4.093 25 Br -0.053 7.053 26 C -0.063 4.063 27 H 0.270 0.730 28 H 0.148 0.852 29 H 0.126 0.874 30 H 0.123 0.877 31 H 0.129 0.871 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.132 0.868 35 H 0.134 0.866 36 H 0.133 0.867 37 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.495 -19.169 1.012 22.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.163 4.163 3 Si 0.768 3.232 4 H -0.195 1.195 5 H -0.204 1.204 6 H -0.195 1.195 7 C -0.447 4.447 8 H 0.113 0.887 9 O -0.120 6.120 10 C 0.283 3.717 11 O -0.428 6.428 12 C -0.124 4.124 13 C -0.052 4.052 14 C -0.189 4.189 15 C -0.086 4.086 16 C -0.247 4.247 17 C 0.125 3.875 18 O -0.180 6.180 19 C 0.019 3.981 20 C -0.081 4.081 21 C -0.095 4.095 22 C -0.136 4.136 23 C -0.104 4.104 24 C -0.172 4.172 25 Br 0.033 6.967 26 C -0.083 4.083 27 H 0.080 0.920 28 H 0.165 0.835 29 H 0.144 0.856 30 H 0.141 0.859 31 H 0.146 0.854 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.150 0.850 35 H 0.152 0.848 36 H 0.151 0.849 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 12.122 -18.735 1.637 22.375 hybrid contribution 0.106 0.577 -0.339 0.677 sum 12.228 -18.159 1.298 21.930 Atomic orbital electron populations 1.69962 1.05978 1.27779 1.46413 1.25318 0.95813 0.98770 0.96419 0.85750 0.78652 0.79455 0.79387 1.19487 1.20368 1.19468 1.21208 0.92453 0.79845 1.51241 0.88710 1.83894 1.39097 1.13138 1.75841 1.20498 0.86015 0.85149 0.80038 1.90690 1.14625 1.87557 1.49974 1.18877 0.92943 0.90069 1.10477 1.21533 0.92607 0.98982 0.92062 1.21013 1.00109 0.92066 1.05761 1.20998 0.92964 0.98427 0.96216 1.21065 0.95936 0.95769 1.11900 1.18992 0.82522 0.92726 0.93288 1.86513 1.14742 1.29658 1.87087 1.21600 0.88064 0.86310 1.02157 1.19434 0.93832 1.01727 0.93137 1.21234 0.94390 0.95963 0.97868 1.21147 0.94386 1.00149 0.97868 1.21156 1.00306 0.97955 0.90959 1.21720 0.95135 1.08462 0.91932 1.96713 1.75818 1.97143 1.27042 1.21019 0.92186 0.96462 0.98633 0.92035 0.83451 0.85580 0.85879 0.85363 0.91050 0.90922 0.85041 0.84783 0.84912 0.84787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.38 13.67 55.49 0.76 -24.62 16 2 C 0.04 1.16 5.50 -17.52 -0.10 1.06 16 3 Si 0.94 21.69 29.55 -169.99 -5.02 16.67 16 4 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 5 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 6 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 7 C -0.37 -11.25 9.65 30.94 0.30 -10.95 16 8 H 0.10 2.91 6.86 -52.49 -0.36 2.55 16 9 O -0.21 -6.25 8.99 -21.78 -0.20 -6.45 16 10 C 0.44 11.65 7.83 34.44 0.27 11.92 16 11 O -0.53 -15.31 14.41 -26.62 -0.38 -15.69 16 12 C -0.12 -2.59 5.89 -104.86 -0.62 -3.21 16 13 C -0.03 -0.61 9.61 -39.17 -0.38 -0.99 16 14 C -0.17 -2.43 10.02 -39.63 -0.40 -2.83 16 15 C -0.07 -0.85 10.03 -39.52 -0.40 -1.25 16 16 C -0.23 -3.12 9.03 -39.48 -0.36 -3.48 16 17 C 0.17 3.12 6.70 -38.67 -0.26 2.86 16 18 O -0.27 -4.97 8.19 -40.51 -0.33 -5.30 16 19 C 0.09 1.19 4.87 36.00 0.18 1.37 16 20 C -0.08 -1.03 5.51 -104.63 -0.58 -1.61 16 21 C -0.08 -0.88 9.70 -39.58 -0.38 -1.26 16 22 C -0.12 -1.20 10.05 -39.59 -0.40 -1.60 16 23 C -0.08 -0.90 9.79 -39.55 -0.39 -1.29 16 24 C -0.09 -1.13 6.22 -39.51 -0.25 -1.38 16 25 Br -0.05 -0.59 33.70 -68.01 -2.29 -2.88 16 26 C -0.06 -0.81 9.44 -39.55 -0.37 -1.18 16 27 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 28 H 0.15 2.85 7.61 -52.49 -0.40 2.45 16 29 H 0.13 1.44 8.06 -52.49 -0.42 1.01 16 30 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 31 H 0.13 1.33 6.30 -52.49 -0.33 1.00 16 32 H 0.07 0.75 7.61 -51.93 -0.39 0.36 16 33 H 0.07 0.74 7.60 -51.93 -0.39 0.35 16 34 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 35 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 36 H 0.13 1.15 8.06 -52.49 -0.42 0.72 16 37 H 0.13 1.61 8.06 -52.49 -0.42 1.19 16 LS Contribution 352.30 15.07 5.31 5.31 Total: -1.00 -35.29 352.30 -9.83 -45.13 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: -3.55 Total: 1.65 kcal Atomic # 6 Polarization: -9.70 SS G_CDS: -4.12 Total: -13.82 kcal Atomic # 7 Polarization: -25.38 SS G_CDS: 0.76 Total: -24.62 kcal Atomic # 8 Polarization: -26.53 SS G_CDS: -0.91 Total: -27.44 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 35 Polarization: -0.59 SS G_CDS: -2.29 Total: -2.88 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -35.29 -9.83 -45.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005583239.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.067 kcal (2) G-P(sol) polarization free energy of solvation -35.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds