Wall clock time and date at job start Tue Mar 31 2020 05:53:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31592 * 1 3 3 Si 1.86803 * 120.00122 * 2 1 4 4 H 1.48503 * 109.47058 * 269.99842 * 3 2 1 5 5 H 1.48496 * 109.46942 * 29.99674 * 3 2 1 6 6 H 1.48502 * 109.47222 * 149.99820 * 3 2 1 7 7 C 1.38607 * 120.00223 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00429 * 180.02562 * 7 2 1 9 9 O 1.34757 * 119.99529 * 0.27777 * 7 2 1 10 10 C 1.35756 * 116.99676 * 179.72253 * 9 7 2 11 11 C 1.42036 * 120.37511 * 274.91960 * 10 9 7 12 12 O 1.21976 * 121.31431 * 0.02562 * 11 10 9 13 13 C 1.47541 * 117.37071 * 179.80419 * 11 10 9 14 14 C 1.39482 * 121.17023 * 180.20830 * 13 11 10 15 15 C 1.37855 * 119.58142 * 180.27229 * 14 13 11 16 16 Cl 1.73604 * 119.87495 * 180.02562 * 15 14 13 17 17 C 1.38852 * 120.25035 * 359.97438 * 15 14 13 18 18 C 1.37824 * 120.67560 * 0.02562 * 17 15 14 19 19 C 1.39028 * 119.98112 * 359.97438 * 18 17 15 20 20 O 1.34906 * 120.63885 * 179.97438 * 19 18 17 21 21 C 1.34275 * 122.45579 * 180.02562 * 20 19 18 22 22 C 1.47439 * 118.88006 * 180.02562 * 21 20 19 23 23 C 1.39781 * 120.14862 * 47.96584 * 22 21 20 24 24 C 1.37864 * 119.85259 * 179.79047 * 23 22 21 25 25 C 1.38540 * 120.14406 * 0.49363 * 24 23 22 26 26 Cl 1.73602 * 119.84765 * 179.72201 * 25 24 23 27 27 C 1.38527 * 120.29987 * 359.73968 * 25 24 23 28 28 C 1.37865 * 120.15229 * 0.02562 * 27 25 24 29 29 H 0.96995 * 119.99911 * 0.02562 * 1 2 3 30 30 H 1.07998 * 120.21072 * 0.24714 * 14 13 11 31 31 H 1.08005 * 119.66218 * 179.97438 * 17 15 14 32 32 H 1.07996 * 120.01558 * 180.02562 * 18 17 15 33 33 H 1.08005 * 120.07467 * 0.02562 * 23 22 21 34 34 H 1.07992 * 119.92740 * 180.21434 * 24 23 22 35 35 H 1.08001 * 119.92676 * 180.02562 * 27 25 24 36 36 H 1.08001 * 120.07455 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2500 1.6177 0.0000 4 1 2.4975 2.0464 -1.4001 5 1 1.4474 2.6526 0.7000 6 1 3.5475 1.4402 0.7001 7 6 2.0090 -1.2003 0.0005 8 1 3.0890 -1.2004 0.0010 9 8 1.3352 -2.3673 -0.0046 10 6 2.0746 -3.5059 -0.0096 11 6 2.5539 -4.0456 -1.2329 12 8 2.3165 -3.5053 -2.3004 13 6 3.3546 -5.2828 -1.1609 14 6 3.8682 -5.8783 -2.3128 15 6 4.6073 -7.0372 -2.2081 16 17 5.2508 -7.7846 -3.6368 17 6 4.8401 -7.6085 -0.9641 18 6 4.3375 -7.0288 0.1809 19 6 3.5896 -5.8599 0.0971 20 8 3.0909 -5.2816 1.2093 21 6 2.3638 -4.1534 1.1707 22 6 1.8577 -3.5888 2.4352 23 6 2.7142 -3.4392 3.5297 24 6 2.2356 -2.9065 4.7078 25 6 0.9066 -2.5293 4.8115 26 17 0.3104 -1.8660 6.3010 27 6 0.0513 -2.6793 3.7322 28 6 0.5179 -3.2062 2.5468 29 1 -0.4850 0.8400 -0.0004 30 1 3.6876 -5.4346 -3.2807 31 1 5.4201 -8.5168 -0.8931 32 1 4.5254 -7.4820 1.1430 33 1 3.7495 -3.7367 3.4515 34 1 2.8971 -2.7872 5.5530 35 1 -0.9836 -2.3829 3.8196 36 1 -0.1501 -3.3230 1.7063 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005607488.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:39 Heat of formation + Delta-G solvation = -24.772724 kcal Electronic energy + Delta-G solvation = -28498.322308 eV Core-core repulsion = 24159.567508 eV Total energy + Delta-G solvation = -4338.754800 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 376.010 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.61866 -39.15077 -38.55564 -38.23629 -36.83231 -36.30769 -36.23605 -32.64832 -31.77148 -31.52639 -30.87789 -30.26131 -28.91195 -25.17800 -24.76119 -23.66982 -22.53104 -22.41342 -21.41219 -19.36413 -18.65792 -17.95228 -17.40321 -16.63087 -16.25364 -16.02436 -15.56781 -15.25259 -15.00004 -14.88668 -14.28384 -14.19616 -13.92752 -13.83476 -13.62100 -13.39030 -13.25224 -13.16658 -12.83112 -12.78180 -11.94402 -11.75942 -11.65552 -11.51736 -11.36142 -11.25102 -11.23651 -11.08544 -10.72646 -10.60827 -10.43027 -9.98381 -9.38822 -9.31518 -9.06214 -8.77558 -8.43838 -8.28315 -7.58672 -6.20620 -3.85617 0.44786 0.68209 1.05679 1.60099 1.76310 1.91034 2.26909 2.48963 2.87890 3.21792 3.25059 3.27622 3.75284 3.86708 4.13020 4.23058 4.33844 4.62357 4.71963 4.90182 5.00533 5.08243 5.13487 5.15306 5.37631 5.47198 5.53837 5.57380 5.66199 5.83031 5.85607 5.89761 6.09034 6.20897 6.27841 6.31583 6.43485 6.58576 6.68858 6.99599 7.26815 7.43258 7.99158 8.16192 9.22508 9.82406 10.97168 Molecular weight = 376.01amu Principal moments of inertia in cm(-1) A = 0.009102 B = 0.003275 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3075.487086 B = 8547.535671 C =10978.501970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.038 3.962 3 Si 0.928 3.072 4 H -0.277 1.277 5 H -0.279 1.279 6 H -0.272 1.272 7 C -0.362 4.362 8 H 0.068 0.932 9 O -0.190 6.190 10 C -0.019 4.019 11 C 0.397 3.603 12 O -0.438 6.438 13 C -0.210 4.210 14 C -0.019 4.019 15 C -0.077 4.077 16 Cl -0.066 7.066 17 C -0.053 4.053 18 C -0.136 4.136 19 C 0.163 3.837 20 O -0.212 6.212 21 C 0.099 3.901 22 C -0.025 4.025 23 C -0.079 4.079 24 C -0.122 4.122 25 C -0.023 4.023 26 Cl -0.081 7.081 27 C -0.108 4.108 28 C -0.031 4.031 29 H 0.264 0.736 30 H 0.150 0.850 31 H 0.146 0.854 32 H 0.151 0.849 33 H 0.132 0.868 34 H 0.132 0.868 35 H 0.136 0.864 36 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.463 -13.862 6.401 16.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.163 4.163 3 Si 0.754 3.246 4 H -0.203 1.203 5 H -0.204 1.204 6 H -0.197 1.197 7 C -0.438 4.438 8 H 0.086 0.914 9 O -0.101 6.101 10 C -0.068 4.068 11 C 0.279 3.721 12 O -0.317 6.317 13 C -0.212 4.212 14 C -0.038 4.038 15 C -0.104 4.104 16 Cl -0.038 7.038 17 C -0.072 4.072 18 C -0.154 4.154 19 C 0.116 3.884 20 O -0.118 6.118 21 C 0.052 3.948 22 C -0.025 4.025 23 C -0.098 4.098 24 C -0.141 4.141 25 C -0.050 4.050 26 Cl -0.052 7.052 27 C -0.126 4.126 28 C -0.049 4.049 29 H 0.074 0.926 30 H 0.168 0.832 31 H 0.164 0.836 32 H 0.168 0.832 33 H 0.150 0.850 34 H 0.150 0.850 35 H 0.154 0.846 36 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 7.001 -13.494 6.057 16.364 hybrid contribution 0.637 0.941 -0.349 1.189 sum 7.638 -12.553 5.708 15.763 Atomic orbital electron populations 1.70001 1.05362 1.26760 1.48942 1.24950 0.95794 0.97696 0.97837 0.85911 0.78902 0.81311 0.78479 1.20253 1.20443 1.19674 1.20957 0.90385 0.80716 1.51751 0.91391 1.84021 1.27639 1.08642 1.89826 1.20552 1.00784 0.95087 0.90410 1.19522 0.78665 0.83397 0.90559 1.90737 1.50308 1.59041 1.31574 1.21020 1.06502 1.00821 0.92858 1.20999 0.91867 0.91848 0.99092 1.20735 1.03928 0.97274 0.88476 1.98368 1.85338 1.81688 1.38371 1.20943 0.97407 0.99326 0.89490 1.20330 1.00765 0.94386 0.99950 1.19334 0.93036 0.92316 0.83699 1.83016 1.58970 1.37092 1.32672 1.20999 0.93622 0.85973 0.94185 1.18018 0.93922 1.00741 0.89829 1.21107 0.99464 0.97896 0.91284 1.20780 0.93646 1.01091 0.98576 1.21050 0.94466 1.01505 0.87965 1.98346 1.88520 1.84510 1.33839 1.20924 1.00242 0.99993 0.91486 1.21265 0.93933 0.93220 0.96485 0.92603 0.83239 0.83592 0.83169 0.85010 0.84987 0.84591 0.83731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.37 13.67 55.48 0.76 -24.61 16 2 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 3 Si 0.93 21.49 29.55 -169.99 -5.02 16.47 16 4 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 6 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 7 C -0.36 -10.08 9.81 30.87 0.30 -9.77 16 8 H 0.07 1.85 7.75 -52.49 -0.41 1.45 16 9 O -0.19 -5.08 7.48 -14.83 -0.11 -5.19 16 10 C -0.02 -0.43 5.50 -38.32 -0.21 -0.64 16 11 C 0.40 8.55 6.99 -34.34 -0.24 8.31 16 12 O -0.44 -10.82 17.20 -10.13 -0.17 -11.00 16 13 C -0.21 -3.52 5.89 -104.83 -0.62 -4.14 16 14 C -0.02 -0.28 9.43 -39.26 -0.37 -0.65 16 15 C -0.08 -0.91 6.32 -39.49 -0.25 -1.16 16 16 Cl -0.07 -0.70 28.95 -51.86 -1.50 -2.20 16 17 C -0.05 -0.51 9.79 -39.51 -0.39 -0.90 16 18 C -0.14 -1.43 10.00 -39.44 -0.39 -1.82 16 19 C 0.16 2.36 6.77 -38.48 -0.26 2.10 16 20 O -0.21 -3.30 9.59 4.10 0.04 -3.26 16 21 C 0.10 1.84 6.49 -36.03 -0.23 1.61 16 22 C -0.02 -0.44 5.39 -105.00 -0.57 -1.00 16 23 C -0.08 -1.18 9.72 -39.14 -0.38 -1.56 16 24 C -0.12 -1.70 9.81 -39.61 -0.39 -2.09 16 25 C -0.02 -0.35 6.33 -39.36 -0.25 -0.60 16 26 Cl -0.08 -1.07 28.95 -51.86 -1.50 -2.58 16 27 C -0.11 -1.75 9.81 -39.61 -0.39 -2.14 16 28 C -0.03 -0.56 8.66 -39.14 -0.34 -0.90 16 29 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 30 H 0.15 2.19 7.78 -52.49 -0.41 1.78 16 31 H 0.15 0.95 8.06 -52.48 -0.42 0.53 16 32 H 0.15 1.14 8.06 -52.49 -0.42 0.72 16 33 H 0.13 1.67 8.06 -52.48 -0.42 1.25 16 34 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 35 H 0.14 2.02 8.06 -52.49 -0.42 1.59 16 36 H 0.14 2.83 7.44 -52.49 -0.39 2.44 16 LS Contribution 360.47 15.07 5.43 5.43 Total: -1.00 -31.59 360.47 -9.60 -41.20 By element: Atomic # 1 Polarization: 2.58 SS G_CDS: -2.46 Total: 0.13 kcal Atomic # 6 Polarization: -9.31 SS G_CDS: -5.07 Total: -14.38 kcal Atomic # 7 Polarization: -25.37 SS G_CDS: 0.76 Total: -24.61 kcal Atomic # 8 Polarization: -19.21 SS G_CDS: -0.25 Total: -19.45 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 17 Polarization: -1.78 SS G_CDS: -3.00 Total: -4.78 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.59 -9.60 -41.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005607488.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.423 kcal (2) G-P(sol) polarization free energy of solvation -31.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds