Wall clock time and date at job start Tue Mar 31 2020 05:53:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31592 * 1 3 3 Si 1.86803 * 120.00122 * 2 1 4 4 H 1.48503 * 109.47058 * 269.99842 * 3 2 1 5 5 H 1.48496 * 109.46942 * 29.99674 * 3 2 1 6 6 H 1.48502 * 109.47222 * 149.99820 * 3 2 1 7 7 C 1.38607 * 120.00223 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00429 * 180.02562 * 7 2 1 9 9 O 1.34757 * 119.99529 * 0.27777 * 7 2 1 10 10 C 1.35756 * 116.99676 * 179.72253 * 9 7 2 11 11 C 1.42036 * 120.37511 * 274.91960 * 10 9 7 12 12 O 1.21976 * 121.31431 * 0.02562 * 11 10 9 13 13 C 1.47541 * 117.37071 * 179.80419 * 11 10 9 14 14 C 1.39482 * 121.17023 * 180.20830 * 13 11 10 15 15 C 1.37855 * 119.58142 * 180.27229 * 14 13 11 16 16 Cl 1.73604 * 119.87495 * 180.02562 * 15 14 13 17 17 C 1.38852 * 120.25035 * 359.97438 * 15 14 13 18 18 C 1.37824 * 120.67560 * 0.02562 * 17 15 14 19 19 C 1.39028 * 119.98112 * 359.97438 * 18 17 15 20 20 O 1.34906 * 120.63885 * 179.97438 * 19 18 17 21 21 C 1.34275 * 122.45579 * 180.02562 * 20 19 18 22 22 C 1.47439 * 118.88006 * 180.02562 * 21 20 19 23 23 C 1.39781 * 120.14862 * 47.96584 * 22 21 20 24 24 C 1.37864 * 119.85259 * 179.79047 * 23 22 21 25 25 C 1.38540 * 120.14406 * 0.49363 * 24 23 22 26 26 Cl 1.73602 * 119.84765 * 179.72201 * 25 24 23 27 27 C 1.38527 * 120.29987 * 359.73968 * 25 24 23 28 28 C 1.37865 * 120.15229 * 0.02562 * 27 25 24 29 29 H 0.96995 * 119.99911 * 0.02562 * 1 2 3 30 30 H 1.07998 * 120.21072 * 0.24714 * 14 13 11 31 31 H 1.08005 * 119.66218 * 179.97438 * 17 15 14 32 32 H 1.07996 * 120.01558 * 180.02562 * 18 17 15 33 33 H 1.08005 * 120.07467 * 0.02562 * 23 22 21 34 34 H 1.07992 * 119.92740 * 180.21434 * 24 23 22 35 35 H 1.08001 * 119.92676 * 180.02562 * 27 25 24 36 36 H 1.08001 * 120.07455 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2500 1.6177 0.0000 4 1 2.4975 2.0464 -1.4001 5 1 1.4474 2.6526 0.7000 6 1 3.5475 1.4402 0.7001 7 6 2.0090 -1.2003 0.0005 8 1 3.0890 -1.2004 0.0010 9 8 1.3352 -2.3673 -0.0046 10 6 2.0746 -3.5059 -0.0096 11 6 2.5539 -4.0456 -1.2329 12 8 2.3165 -3.5053 -2.3004 13 6 3.3546 -5.2828 -1.1609 14 6 3.8682 -5.8783 -2.3128 15 6 4.6073 -7.0372 -2.2081 16 17 5.2508 -7.7846 -3.6368 17 6 4.8401 -7.6085 -0.9641 18 6 4.3375 -7.0288 0.1809 19 6 3.5896 -5.8599 0.0971 20 8 3.0909 -5.2816 1.2093 21 6 2.3638 -4.1534 1.1707 22 6 1.8577 -3.5888 2.4352 23 6 2.7142 -3.4392 3.5297 24 6 2.2356 -2.9065 4.7078 25 6 0.9066 -2.5293 4.8115 26 17 0.3104 -1.8660 6.3010 27 6 0.0513 -2.6793 3.7322 28 6 0.5179 -3.2062 2.5468 29 1 -0.4850 0.8400 -0.0004 30 1 3.6876 -5.4346 -3.2807 31 1 5.4201 -8.5168 -0.8931 32 1 4.5254 -7.4820 1.1430 33 1 3.7495 -3.7367 3.4515 34 1 2.8971 -2.7872 5.5530 35 1 -0.9836 -2.3829 3.8196 36 1 -0.1501 -3.3230 1.7063 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000005607488.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:38 Heat of formation + Delta-G solvation = -41.269255 kcal Electronic energy + Delta-G solvation = -28499.037651 eV Core-core repulsion = 24159.567508 eV Total energy + Delta-G solvation = -4339.470144 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 376.010 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.98327 -40.42109 -40.14923 -39.42487 -38.40255 -37.46636 -37.33912 -34.39111 -33.40099 -32.75710 -32.14931 -31.46823 -30.29688 -27.10772 -26.10104 -25.05713 -23.76149 -23.60187 -22.77243 -20.75155 -20.20368 -19.51639 -18.89784 -17.92742 -17.60047 -17.48418 -16.89040 -16.70345 -16.24647 -16.17318 -16.00948 -15.55682 -15.28530 -15.24708 -15.01742 -14.71394 -14.50835 -14.41563 -14.28630 -13.78598 -13.57188 -13.49592 -12.95607 -12.79192 -12.71391 -12.52507 -12.40572 -12.34785 -12.19233 -12.06214 -11.93596 -11.80897 -10.98176 -10.50703 -10.33602 -10.25499 -10.03222 -9.61928 -9.11021 -8.24755 -5.97076 -0.87725 -0.52331 -0.10081 0.33508 0.40008 0.91711 1.06810 1.15538 1.32772 1.39407 1.46783 1.62737 2.24515 2.47376 2.56984 2.76930 3.05903 3.17253 3.36515 3.65035 3.77819 3.82510 3.90037 3.91311 4.10488 4.25012 4.30618 4.41235 4.55778 4.60736 4.63552 4.77047 4.87665 4.95861 4.98106 5.11414 5.14356 5.20729 5.26461 5.39537 5.70004 6.01168 6.11279 6.43402 7.17072 7.93532 8.96068 Molecular weight = 376.01amu Principal moments of inertia in cm(-1) A = 0.009102 B = 0.003275 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3075.487086 B = 8547.535671 C =10978.501970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.018 4.018 3 Si 0.991 3.009 4 H -0.277 1.277 5 H -0.269 1.269 6 H -0.258 1.258 7 C -0.372 4.372 8 H 0.059 0.941 9 O -0.222 6.222 10 C -0.091 4.091 11 C 0.387 3.613 12 O -0.501 6.501 13 C -0.227 4.227 14 C -0.037 4.037 15 C -0.066 4.066 16 Cl -0.050 7.050 17 C -0.030 4.030 18 C -0.106 4.106 19 C 0.142 3.858 20 O -0.195 6.195 21 C 0.160 3.840 22 C -0.057 4.057 23 C -0.068 4.068 24 C -0.112 4.112 25 C -0.020 4.020 26 Cl -0.060 7.060 27 C -0.119 4.119 28 C -0.047 4.047 29 H 0.264 0.736 30 H 0.135 0.865 31 H 0.196 0.804 32 H 0.197 0.803 33 H 0.163 0.837 34 H 0.171 0.829 35 H 0.141 0.859 36 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.014 -16.717 9.537 22.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.213 4.213 3 Si 0.813 3.187 4 H -0.203 1.203 5 H -0.193 1.193 6 H -0.182 1.182 7 C -0.448 4.448 8 H 0.077 0.923 9 O -0.134 6.134 10 C -0.139 4.139 11 C 0.275 3.725 12 O -0.386 6.386 13 C -0.230 4.230 14 C -0.056 4.056 15 C -0.093 4.093 16 Cl -0.021 7.021 17 C -0.048 4.048 18 C -0.124 4.124 19 C 0.096 3.904 20 O -0.099 6.099 21 C 0.112 3.888 22 C -0.058 4.058 23 C -0.086 4.086 24 C -0.130 4.130 25 C -0.046 4.046 26 Cl -0.031 7.031 27 C -0.137 4.137 28 C -0.066 4.066 29 H 0.073 0.927 30 H 0.152 0.848 31 H 0.213 0.787 32 H 0.214 0.786 33 H 0.181 0.819 34 H 0.189 0.811 35 H 0.159 0.841 36 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 10.589 -16.421 9.219 21.605 hybrid contribution -0.312 1.449 -1.145 1.873 sum 10.277 -14.971 8.074 19.873 Atomic orbital electron populations 1.70143 1.06980 1.27425 1.51609 1.25947 0.96702 1.00983 0.97701 0.84981 0.78218 0.77033 0.78498 1.20320 1.19318 1.18159 1.21128 0.90065 0.82149 1.51507 0.92332 1.84017 1.29119 1.09364 1.90909 1.20841 1.05335 0.95541 0.92180 1.19928 0.78451 0.84634 0.89516 1.90674 1.53661 1.61313 1.32941 1.20684 1.07566 0.99634 0.95069 1.20914 0.93365 0.93394 0.97893 1.20902 1.02250 0.95935 0.90221 1.98386 1.84815 1.81004 1.37862 1.21536 0.95707 0.99870 0.87686 1.20890 0.97594 0.91653 1.02303 1.19796 0.94588 0.93817 0.82194 1.83066 1.58037 1.35450 1.33377 1.21079 0.89542 0.84577 0.93611 1.18201 0.94413 1.02713 0.90463 1.21441 1.00275 0.96618 0.90239 1.21204 0.93465 0.99150 0.99185 1.21210 0.94845 1.00399 0.88193 1.98358 1.88445 1.84084 1.32181 1.20993 1.01053 1.00222 0.91472 1.21090 0.94326 0.94624 0.96520 0.92720 0.84756 0.78686 0.78576 0.81935 0.81131 0.84084 0.86839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.19 13.67 21.61 0.30 -56.90 16 2 C -0.02 -1.04 5.49 84.82 0.47 -0.58 16 3 Si 0.99 45.83 29.55 68.60 2.03 47.86 16 4 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 5 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 6 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 7 C -0.37 -22.21 9.81 67.91 0.67 -21.54 16 8 H 0.06 3.43 7.75 -2.91 -0.02 3.41 16 9 O -0.22 -12.99 7.48 -7.66 -0.06 -13.05 16 10 C -0.09 -4.43 5.50 23.08 0.13 -4.30 16 11 C 0.39 18.29 6.99 25.67 0.18 18.47 16 12 O -0.50 -27.74 17.20 9.17 0.16 -27.58 16 13 C -0.23 -7.86 5.89 -20.00 -0.12 -7.98 16 14 C -0.04 -1.08 9.43 22.48 0.21 -0.87 16 15 C -0.07 -1.37 6.32 22.33 0.14 -1.23 16 16 Cl -0.05 -0.92 28.95 -2.72 -0.08 -0.99 16 17 C -0.03 -0.41 9.79 22.32 0.22 -0.19 16 18 C -0.11 -1.67 10.00 22.36 0.22 -1.45 16 19 C 0.14 3.83 6.77 22.98 0.16 3.98 16 20 O -0.19 -5.75 9.59 -8.23 -0.08 -5.83 16 21 C 0.16 6.12 6.49 24.57 0.16 6.28 16 22 C -0.06 -2.05 5.39 -20.11 -0.11 -2.16 16 23 C -0.07 -1.85 9.72 22.55 0.22 -1.63 16 24 C -0.11 -2.73 9.81 22.25 0.22 -2.52 16 25 C -0.02 -0.56 6.33 22.41 0.14 -0.41 16 26 Cl -0.06 -1.44 28.95 -2.72 -0.08 -1.52 16 27 C -0.12 -3.93 9.81 22.25 0.22 -3.71 16 28 C -0.05 -1.81 8.66 22.56 0.20 -1.62 16 29 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 30 H 0.13 4.28 7.78 -2.91 -0.02 4.26 16 31 H 0.20 0.97 8.06 -2.91 -0.02 0.95 16 32 H 0.20 1.43 8.06 -2.91 -0.02 1.40 16 33 H 0.16 3.41 8.06 -2.91 -0.02 3.38 16 34 H 0.17 2.91 8.06 -2.91 -0.02 2.88 16 35 H 0.14 4.37 8.06 -2.91 -0.02 4.35 16 36 H 0.11 5.01 7.44 -2.91 -0.02 4.99 16 Total: -1.00 -79.45 360.47 6.67 -72.78 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: 1.17 Total: 6.68 kcal Atomic # 6 Polarization: -24.77 SS G_CDS: 3.32 Total: -21.45 kcal Atomic # 7 Polarization: -57.19 SS G_CDS: 0.30 Total: -56.90 kcal Atomic # 8 Polarization: -46.48 SS G_CDS: 0.02 Total: -46.45 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.86 kcal Atomic # 17 Polarization: -2.36 SS G_CDS: -0.16 Total: -2.52 kcal Total: -79.45 6.67 -72.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005607488.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.513 kcal (2) G-P(sol) polarization free energy of solvation -79.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds