Wall clock time and date at job start Tue Mar 31 2020 05:07:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42899 * 109.47079 * 2 1 4 4 C 1.36005 * 116.99624 * 179.97438 * 3 2 1 5 5 C 1.38699 * 119.98086 * 359.72589 * 4 3 2 6 6 C 1.38114 * 120.01705 * 179.76460 * 5 4 3 7 7 C 1.38858 * 119.97847 * 0.52975 * 6 5 4 8 8 N 1.39938 * 120.01811 * 179.69857 * 7 6 5 9 9 C 1.46503 * 120.00040 * 153.90755 * 8 7 6 10 10 C 1.50703 * 109.46637 * 85.00215 * 9 8 7 11 11 H 1.07998 * 120.00425 * 0.02562 * 10 9 8 12 12 C 1.37885 * 119.99707 * 179.97438 * 10 9 8 13 13 N 1.31518 * 119.99555 * 180.02562 * 12 10 9 14 14 Si 1.86794 * 120.00171 * 0.02562 * 12 10 9 15 15 H 1.48496 * 109.47319 * 89.99673 * 14 12 10 16 16 H 1.48502 * 109.47298 * 209.99910 * 14 12 10 17 17 H 1.48512 * 109.46968 * 329.99678 * 14 12 10 18 18 S 1.65597 * 120.00200 * 333.91572 * 8 7 6 19 19 O 1.42103 * 106.40439 * 204.72581 * 18 8 7 20 20 O 1.42102 * 106.40249 * 337.64208 * 18 8 7 21 21 C 1.76195 * 107.22007 * 91.18318 * 18 8 7 22 22 C 1.38238 * 119.99827 * 263.19184 * 21 18 8 23 23 C 1.38236 * 120.00027 * 179.74485 * 22 21 18 24 24 C 1.38239 * 119.99834 * 0.55114 * 23 22 21 25 25 C 1.50695 * 120.00338 * 179.72600 * 24 23 22 26 26 C 1.38235 * 119.99854 * 359.70143 * 24 23 22 27 27 C 1.38232 * 120.00120 * 0.02562 * 26 24 23 28 28 C 1.38866 * 119.96394 * 359.72538 * 7 6 5 29 29 C 1.38110 * 119.97762 * 359.97438 * 28 7 6 30 30 H 1.08999 * 109.47561 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47582 * 300.00348 * 1 2 3 32 32 H 1.09005 * 109.46975 * 60.00276 * 1 2 3 33 33 H 1.08993 * 109.47150 * 239.99722 * 2 1 3 34 34 H 1.09006 * 109.46288 * 120.00014 * 2 1 3 35 35 H 1.08002 * 119.99159 * 359.97438 * 5 4 3 36 36 H 1.08000 * 120.00924 * 180.25889 * 6 5 4 37 37 H 1.08994 * 109.47259 * 205.00251 * 9 8 7 38 38 H 1.09002 * 109.47285 * 325.00644 * 9 8 7 39 39 H 0.97003 * 119.99571 * 180.02562 * 13 12 10 40 40 H 1.07994 * 120.00113 * 359.97438 * 22 21 18 41 41 H 1.07990 * 120.00174 * 180.27340 * 23 22 21 42 42 H 1.09003 * 109.47196 * 269.97971 * 25 24 23 43 43 H 1.09004 * 109.47079 * 29.97522 * 25 24 23 44 44 H 1.08997 * 109.47514 * 149.97992 * 25 24 23 45 45 H 1.08006 * 119.99958 * 179.97438 * 26 24 23 46 46 H 1.08002 * 120.00413 * 179.97438 * 27 26 24 47 47 H 1.08000 * 120.01218 * 180.02562 * 28 7 6 48 48 H 1.08005 * 119.98801 * 180.02562 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3547 1.5254 0.0005 5 6 4.1991 0.4251 0.0068 6 6 5.5685 0.6051 0.0025 7 6 6.0997 1.8881 0.0029 8 7 7.4870 2.0714 0.0049 9 6 8.0647 3.2969 -0.5526 10 6 8.0659 4.3755 0.4998 11 1 7.6757 4.1688 1.4855 12 6 8.5661 5.6261 0.2047 13 7 8.5675 6.5673 1.1234 14 14 9.2415 5.9835 -1.4998 15 1 8.1488 6.4881 -2.3695 16 1 10.3111 7.0091 -1.4033 17 1 9.8018 4.7372 -2.0815 18 16 8.4757 0.9031 0.6371 19 8 9.6723 1.5603 1.0314 20 8 7.6762 0.1419 1.5319 21 6 8.9141 -0.1793 -0.6822 22 6 8.2144 -1.3563 -0.8721 23 6 8.5548 -2.2030 -1.9104 24 6 9.6023 -1.8782 -2.7520 25 6 9.9775 -2.8042 -3.8801 26 6 10.3053 -0.7037 -2.5589 27 6 9.9612 0.1457 -1.5241 28 6 5.2534 2.9891 0.0020 29 6 3.8844 2.8072 0.0001 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 1.8933 -0.5138 -0.8899 34 1 1.8932 -0.5139 0.8901 35 1 3.7858 -0.5726 0.0117 36 1 6.2259 -0.2517 0.0031 37 1 9.0877 3.1024 -0.8747 38 1 7.4707 3.6229 -1.4064 39 1 8.9190 7.4472 0.9156 40 1 7.3994 -1.6126 -0.2114 41 1 8.0054 -3.1204 -2.0614 42 1 10.7209 -3.5205 -3.5303 43 1 9.0909 -3.3383 -4.2219 44 1 10.3921 -2.2236 -4.7042 45 1 11.1240 -0.4501 -3.2162 46 1 10.5107 1.0631 -1.3729 47 1 5.6657 3.9873 0.0019 48 1 3.2260 3.6634 -0.0011 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005652803.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:34 Heat of formation + Delta-G solvation = -50.552369 kcal Electronic energy + Delta-G solvation = -32561.723118 eV Core-core repulsion = 28288.402916 eV Total energy + Delta-G solvation = -4273.320202 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 375.134 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -39.92225 -39.41888 -38.03660 -36.89657 -35.42707 -35.04922 -33.18703 -32.57641 -31.72104 -31.17860 -30.58862 -28.89695 -27.45741 -26.96663 -23.98059 -23.00087 -22.42975 -22.37497 -21.95001 -20.83936 -18.93012 -18.25552 -17.82985 -17.26010 -16.81747 -16.32571 -16.01313 -15.66776 -15.51960 -15.08651 -14.58685 -14.41827 -14.29956 -14.13143 -13.90911 -13.67848 -13.56941 -13.32907 -13.03124 -12.78475 -12.69081 -12.61714 -12.58296 -12.40726 -12.27463 -12.14200 -12.02787 -11.63854 -11.57706 -11.55084 -11.37844 -11.27694 -11.23848 -10.85778 -10.59103 -10.55239 -10.37619 -10.25786 -9.65938 -9.22534 -9.14014 -9.03709 -8.68475 -8.60653 -7.18886 -6.16592 -4.17947 0.55037 0.85655 1.20378 1.71483 1.84072 3.14833 3.20911 3.27369 3.30230 3.37108 3.54079 4.02532 4.27801 4.30344 4.45863 4.55839 4.68683 4.78763 4.84171 4.87859 5.02487 5.07630 5.12711 5.15877 5.17411 5.22328 5.25423 5.39805 5.42573 5.45623 5.52195 5.67184 5.68364 5.72471 5.78584 5.86889 5.91112 6.03716 6.05085 6.16532 6.28124 6.33615 6.41838 6.55623 6.63217 6.70454 6.74514 7.03450 7.14036 7.39172 7.43736 7.72954 8.37275 8.88563 9.40251 10.96025 Molecular weight = 375.13amu Principal moments of inertia in cm(-1) A = 0.005756 B = 0.004712 C = 0.002965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4863.491526 B = 5941.272567 C = 9440.349695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.320 6.320 4 C 0.092 3.908 5 C -0.180 4.180 6 C -0.132 4.132 7 C 0.155 3.845 8 N -0.917 5.917 9 C 0.217 3.783 10 C -0.538 4.538 11 H 0.084 0.916 12 C 0.080 3.920 13 N -0.886 5.886 14 Si 0.867 3.133 15 H -0.272 1.272 16 H -0.281 1.281 17 H -0.264 1.264 18 S 2.682 3.318 19 O -0.929 6.929 20 O -0.958 6.958 21 C -0.681 4.681 22 C -0.020 4.020 23 C -0.144 4.144 24 C -0.037 4.037 25 C -0.121 4.121 26 C -0.143 4.143 27 C -0.012 4.012 28 C -0.090 4.090 29 C -0.126 4.126 30 H 0.074 0.926 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.125 0.875 36 H 0.124 0.876 37 H 0.041 0.959 38 H 0.040 0.960 39 H 0.267 0.733 40 H 0.141 0.859 41 H 0.130 0.870 42 H 0.076 0.924 43 H 0.070 0.930 44 H 0.071 0.929 45 H 0.131 0.869 46 H 0.141 0.859 47 H 0.161 0.839 48 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.271 -18.233 -9.817 21.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.021 4.021 3 O -0.234 6.234 4 C 0.047 3.953 5 C -0.199 4.199 6 C -0.154 4.154 7 C 0.058 3.942 8 N -0.743 5.743 9 C 0.095 3.905 10 C -0.576 4.576 11 H 0.102 0.898 12 C -0.124 4.124 13 N -0.523 5.523 14 Si 0.694 3.306 15 H -0.197 1.197 16 H -0.207 1.207 17 H -0.189 1.189 18 S 2.773 3.227 19 O -0.919 6.919 20 O -0.948 6.948 21 C -0.766 4.766 22 C -0.039 4.039 23 C -0.163 4.163 24 C -0.038 4.038 25 C -0.178 4.178 26 C -0.161 4.161 27 C -0.031 4.031 28 C -0.111 4.111 29 C -0.145 4.145 30 H 0.093 0.907 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.143 0.857 36 H 0.142 0.858 37 H 0.059 0.941 38 H 0.058 0.942 39 H 0.077 0.923 40 H 0.158 0.842 41 H 0.148 0.852 42 H 0.095 0.905 43 H 0.089 0.911 44 H 0.090 0.910 45 H 0.149 0.851 46 H 0.159 0.841 47 H 0.178 0.822 48 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -5.974 -17.946 -8.942 20.921 hybrid contribution 0.622 -0.157 -1.478 1.611 sum -5.352 -18.104 -10.419 21.562 Atomic orbital electron populations 1.21761 0.93194 1.02469 1.03395 1.22685 0.95460 0.82771 1.01177 1.86053 1.19429 1.28402 1.89564 1.18865 0.81766 0.94183 1.00478 1.20780 0.93122 0.97715 1.08309 1.20855 0.95558 0.95230 1.03753 1.17436 0.82699 0.93541 1.00490 1.55389 1.12493 1.32192 1.74234 1.19759 0.93628 0.81560 0.95593 1.21266 1.42546 0.94417 0.99400 0.89836 1.24819 0.94786 0.95924 0.96898 1.69884 1.45325 1.03706 1.33431 0.86988 0.79645 0.78967 0.85026 1.19748 1.20670 1.18875 1.02449 0.73616 0.72809 0.73844 1.93634 1.45453 1.73437 1.79384 1.93558 1.69387 1.71353 1.60501 1.31297 1.08432 1.13933 1.22982 1.20962 0.96231 0.91356 0.95376 1.21123 0.98557 1.00453 0.96129 1.20232 0.93729 0.94564 0.95238 1.20913 1.02344 0.98529 0.95973 1.21175 1.01028 0.94806 0.99138 1.21002 0.92443 0.98527 0.91117 1.21290 0.91229 1.00258 0.98362 1.20328 0.94711 0.94543 1.04930 0.90735 0.91596 0.91681 0.92400 0.92235 0.85698 0.85793 0.94079 0.94240 0.92295 0.84185 0.85192 0.90508 0.91067 0.91018 0.85080 0.84090 0.82182 0.85106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 10.28 37.16 0.38 -0.82 16 2 C 0.05 0.56 5.46 37.16 0.20 0.76 16 3 O -0.32 -4.55 10.14 -19.76 -0.20 -4.75 16 4 C 0.09 1.47 6.69 -39.24 -0.26 1.20 16 5 C -0.18 -2.74 9.03 -39.46 -0.36 -3.10 16 6 C -0.13 -2.27 8.45 -39.40 -0.33 -2.60 16 7 C 0.15 3.02 6.08 -83.70 -0.51 2.51 16 8 N -0.92 -19.08 2.99 -59.76 -0.18 -19.26 16 9 C 0.22 4.92 3.54 -5.19 -0.02 4.91 16 10 C -0.54 -14.55 8.41 -34.44 -0.29 -14.84 16 11 H 0.08 2.51 8.06 -52.49 -0.42 2.08 16 12 C 0.08 2.20 5.47 -17.81 -0.10 2.11 16 13 N -0.89 -26.15 13.96 55.43 0.77 -25.38 16 14 Si 0.87 20.09 27.47 -169.99 -4.67 15.42 16 15 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 16 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 17 H -0.26 -5.74 6.54 56.52 0.37 -5.37 16 18 S 2.68 53.45 5.09 -107.50 -0.55 52.90 16 19 O -0.93 -21.45 16.48 -57.17 -0.94 -22.39 16 20 O -0.96 -19.60 14.32 -57.17 -0.82 -20.42 16 21 C -0.68 -10.94 5.94 -39.58 -0.23 -11.17 16 22 C -0.02 -0.28 8.66 -39.58 -0.34 -0.62 16 23 C -0.14 -1.61 9.70 -39.58 -0.38 -1.99 16 24 C -0.04 -0.40 5.88 -104.62 -0.62 -1.02 16 25 C -0.12 -0.86 10.01 36.00 0.36 -0.50 16 26 C -0.14 -1.71 9.70 -39.58 -0.38 -2.10 16 27 C -0.01 -0.17 9.52 -39.58 -0.38 -0.55 16 28 C -0.09 -1.72 9.06 -39.40 -0.36 -2.08 16 29 C -0.13 -2.13 9.98 -39.46 -0.39 -2.52 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.53 7.67 -51.93 -0.40 0.13 16 34 H 0.06 0.58 7.65 -51.93 -0.40 0.18 16 35 H 0.13 1.51 6.29 -52.49 -0.33 1.18 16 36 H 0.12 1.95 3.44 -52.49 -0.18 1.77 16 37 H 0.04 0.92 6.70 -51.93 -0.35 0.57 16 38 H 0.04 0.84 7.22 -51.93 -0.38 0.47 16 39 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 40 H 0.14 1.75 5.96 -52.49 -0.31 1.43 16 41 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 42 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.07 0.43 8.09 -51.93 -0.42 0.01 16 44 H 0.07 0.45 8.09 -51.93 -0.42 0.03 16 45 H 0.13 1.23 8.06 -52.48 -0.42 0.81 16 46 H 0.14 2.08 7.78 -52.49 -0.41 1.67 16 47 H 0.16 3.34 6.17 -52.49 -0.32 3.01 16 48 H 0.13 1.98 8.06 -52.48 -0.42 1.56 16 LS Contribution 401.22 15.07 6.05 6.05 Total: -1.00 -33.61 401.22 -11.01 -44.62 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -6.46 Total: 5.63 kcal Atomic # 6 Polarization: -28.41 SS G_CDS: -4.01 Total: -32.42 kcal Atomic # 7 Polarization: -45.23 SS G_CDS: 0.60 Total: -44.64 kcal Atomic # 8 Polarization: -45.60 SS G_CDS: -1.96 Total: -47.56 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -4.67 Total: 15.42 kcal Atomic # 16 Polarization: 53.45 SS G_CDS: -0.55 Total: 52.90 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -33.61 -11.01 -44.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005652803.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.936 kcal (2) G-P(sol) polarization free energy of solvation -33.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds