Wall clock time and date at job start Tue Mar 31 2020 05:07:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42899 * 109.47079 * 2 1 4 4 C 1.36005 * 116.99624 * 179.97438 * 3 2 1 5 5 C 1.38699 * 119.98086 * 359.72589 * 4 3 2 6 6 C 1.38114 * 120.01705 * 179.76460 * 5 4 3 7 7 C 1.38858 * 119.97847 * 0.52975 * 6 5 4 8 8 N 1.39938 * 120.01811 * 179.69857 * 7 6 5 9 9 C 1.46503 * 120.00040 * 153.90755 * 8 7 6 10 10 C 1.50703 * 109.46637 * 85.00215 * 9 8 7 11 11 H 1.07998 * 120.00425 * 0.02562 * 10 9 8 12 12 C 1.37885 * 119.99707 * 179.97438 * 10 9 8 13 13 N 1.31518 * 119.99555 * 180.02562 * 12 10 9 14 14 Si 1.86794 * 120.00171 * 0.02562 * 12 10 9 15 15 H 1.48496 * 109.47319 * 89.99673 * 14 12 10 16 16 H 1.48502 * 109.47298 * 209.99910 * 14 12 10 17 17 H 1.48512 * 109.46968 * 329.99678 * 14 12 10 18 18 S 1.65597 * 120.00200 * 333.91572 * 8 7 6 19 19 O 1.42103 * 106.40439 * 204.72581 * 18 8 7 20 20 O 1.42102 * 106.40249 * 337.64208 * 18 8 7 21 21 C 1.76195 * 107.22007 * 91.18318 * 18 8 7 22 22 C 1.38238 * 119.99827 * 263.19184 * 21 18 8 23 23 C 1.38236 * 120.00027 * 179.74485 * 22 21 18 24 24 C 1.38239 * 119.99834 * 0.55114 * 23 22 21 25 25 C 1.50695 * 120.00338 * 179.72600 * 24 23 22 26 26 C 1.38235 * 119.99854 * 359.70143 * 24 23 22 27 27 C 1.38232 * 120.00120 * 0.02562 * 26 24 23 28 28 C 1.38866 * 119.96394 * 359.72538 * 7 6 5 29 29 C 1.38110 * 119.97762 * 359.97438 * 28 7 6 30 30 H 1.08999 * 109.47561 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47582 * 300.00348 * 1 2 3 32 32 H 1.09005 * 109.46975 * 60.00276 * 1 2 3 33 33 H 1.08993 * 109.47150 * 239.99722 * 2 1 3 34 34 H 1.09006 * 109.46288 * 120.00014 * 2 1 3 35 35 H 1.08002 * 119.99159 * 359.97438 * 5 4 3 36 36 H 1.08000 * 120.00924 * 180.25889 * 6 5 4 37 37 H 1.08994 * 109.47259 * 205.00251 * 9 8 7 38 38 H 1.09002 * 109.47285 * 325.00644 * 9 8 7 39 39 H 0.97003 * 119.99571 * 180.02562 * 13 12 10 40 40 H 1.07994 * 120.00113 * 359.97438 * 22 21 18 41 41 H 1.07990 * 120.00174 * 180.27340 * 23 22 21 42 42 H 1.09003 * 109.47196 * 269.97971 * 25 24 23 43 43 H 1.09004 * 109.47079 * 29.97522 * 25 24 23 44 44 H 1.08997 * 109.47514 * 149.97992 * 25 24 23 45 45 H 1.08006 * 119.99958 * 179.97438 * 26 24 23 46 46 H 1.08002 * 120.00413 * 179.97438 * 27 26 24 47 47 H 1.08000 * 120.01218 * 180.02562 * 28 7 6 48 48 H 1.08005 * 119.98801 * 180.02562 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3547 1.5254 0.0005 5 6 4.1991 0.4251 0.0068 6 6 5.5685 0.6051 0.0025 7 6 6.0997 1.8881 0.0029 8 7 7.4870 2.0714 0.0049 9 6 8.0647 3.2969 -0.5526 10 6 8.0659 4.3755 0.4998 11 1 7.6757 4.1688 1.4855 12 6 8.5661 5.6261 0.2047 13 7 8.5675 6.5673 1.1234 14 14 9.2415 5.9835 -1.4998 15 1 8.1488 6.4881 -2.3695 16 1 10.3111 7.0091 -1.4033 17 1 9.8018 4.7372 -2.0815 18 16 8.4757 0.9031 0.6371 19 8 9.6723 1.5603 1.0314 20 8 7.6762 0.1419 1.5319 21 6 8.9141 -0.1793 -0.6822 22 6 8.2144 -1.3563 -0.8721 23 6 8.5548 -2.2030 -1.9104 24 6 9.6023 -1.8782 -2.7520 25 6 9.9775 -2.8042 -3.8801 26 6 10.3053 -0.7037 -2.5589 27 6 9.9612 0.1457 -1.5241 28 6 5.2534 2.9891 0.0020 29 6 3.8844 2.8072 0.0001 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 1.8933 -0.5138 -0.8899 34 1 1.8932 -0.5139 0.8901 35 1 3.7858 -0.5726 0.0117 36 1 6.2259 -0.2517 0.0031 37 1 9.0877 3.1024 -0.8747 38 1 7.4707 3.6229 -1.4064 39 1 8.9190 7.4472 0.9156 40 1 7.3994 -1.6126 -0.2114 41 1 8.0054 -3.1204 -2.0614 42 1 10.7209 -3.5205 -3.5303 43 1 9.0909 -3.3383 -4.2219 44 1 10.3921 -2.2236 -4.7042 45 1 11.1240 -0.4501 -3.2162 46 1 10.5107 1.0631 -1.3729 47 1 5.6657 3.9873 0.0019 48 1 3.2260 3.6634 -0.0011 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000005652803.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:33 Heat of formation + Delta-G solvation = -71.874274 kcal Electronic energy + Delta-G solvation = -32562.647705 eV Core-core repulsion = 28288.402916 eV Total energy + Delta-G solvation = -4274.244790 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 375.134 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -41.17863 -40.37124 -39.33534 -38.52259 -37.05961 -36.54988 -34.58239 -34.05468 -32.70652 -32.14585 -31.84260 -30.54839 -28.58835 -28.21931 -25.14337 -24.11165 -23.96427 -23.67630 -22.92891 -22.12672 -20.33609 -19.54096 -19.26000 -18.95526 -18.49558 -17.84075 -16.93671 -16.82055 -16.54560 -16.46376 -16.03486 -15.83761 -15.54873 -15.41226 -14.93892 -14.79986 -14.69754 -14.57087 -14.42897 -14.28039 -13.94285 -13.90059 -13.69103 -13.36570 -13.28271 -13.25223 -13.18627 -13.14842 -13.11607 -12.89706 -12.78876 -12.56626 -12.33864 -12.23060 -12.14514 -11.87166 -11.73460 -11.61544 -11.53433 -10.80672 -10.66199 -10.13051 -10.10985 -9.96956 -8.59027 -8.30929 -6.37841 -0.84501 -0.28385 0.24583 0.36125 0.47649 1.35071 1.38213 1.47067 1.77193 2.32660 2.34538 2.43532 2.62541 2.86308 3.00544 3.13739 3.60038 3.68334 3.79237 3.85282 3.92935 4.05732 4.14528 4.19676 4.28144 4.29170 4.32827 4.45207 4.46697 4.59624 4.62712 4.67290 4.73228 4.81248 4.82716 4.92445 4.95790 5.01565 5.03594 5.05820 5.08835 5.09930 5.23040 5.24569 5.36108 5.37308 5.43402 5.58555 5.65787 5.83634 5.97633 6.24528 6.54797 6.64379 7.23991 8.85938 Molecular weight = 375.13amu Principal moments of inertia in cm(-1) A = 0.005756 B = 0.004712 C = 0.002965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4863.491526 B = 5941.272567 C = 9440.349695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.040 3.960 3 O -0.330 6.330 4 C 0.101 3.899 5 C -0.170 4.170 6 C -0.134 4.134 7 C 0.125 3.875 8 N -0.926 5.926 9 C 0.225 3.775 10 C -0.540 4.540 11 H 0.032 0.968 12 C 0.018 3.982 13 N -0.940 5.940 14 Si 0.935 3.065 15 H -0.254 1.254 16 H -0.280 1.280 17 H -0.239 1.239 18 S 2.678 3.322 19 O -0.978 6.978 20 O -0.975 6.975 21 C -0.687 4.687 22 C -0.031 4.031 23 C -0.138 4.138 24 C -0.026 4.026 25 C -0.120 4.120 26 C -0.143 4.143 27 C -0.036 4.036 28 C -0.111 4.111 29 C -0.132 4.132 30 H 0.101 0.899 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.075 0.925 34 H 0.068 0.932 35 H 0.164 0.836 36 H 0.138 0.862 37 H 0.048 0.952 38 H 0.057 0.943 39 H 0.269 0.731 40 H 0.148 0.852 41 H 0.169 0.831 42 H 0.092 0.908 43 H 0.089 0.911 44 H 0.083 0.917 45 H 0.159 0.841 46 H 0.130 0.870 47 H 0.131 0.869 48 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.175 -22.404 -13.698 27.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.034 4.034 3 O -0.245 6.245 4 C 0.055 3.945 5 C -0.189 4.189 6 C -0.155 4.155 7 C 0.030 3.970 8 N -0.751 5.751 9 C 0.102 3.898 10 C -0.579 4.579 11 H 0.050 0.950 12 C -0.181 4.181 13 N -0.579 5.579 14 Si 0.756 3.244 15 H -0.178 1.178 16 H -0.206 1.206 17 H -0.162 1.162 18 S 2.776 3.224 19 O -0.969 6.969 20 O -0.966 6.966 21 C -0.779 4.779 22 C -0.050 4.050 23 C -0.156 4.156 24 C -0.027 4.027 25 C -0.176 4.176 26 C -0.162 4.162 27 C -0.055 4.055 28 C -0.133 4.133 29 C -0.152 4.152 30 H 0.120 0.880 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.093 0.907 34 H 0.087 0.913 35 H 0.182 0.818 36 H 0.155 0.845 37 H 0.065 0.935 38 H 0.075 0.925 39 H 0.079 0.921 40 H 0.165 0.835 41 H 0.186 0.814 42 H 0.111 0.889 43 H 0.108 0.892 44 H 0.101 0.899 45 H 0.176 0.824 46 H 0.147 0.853 47 H 0.149 0.851 48 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -6.933 -22.104 -12.772 26.453 hybrid contribution 0.770 0.927 -0.249 1.231 sum -6.163 -21.176 -13.021 25.612 Atomic orbital electron populations 1.21798 0.91440 1.04155 1.03080 1.23109 0.96937 0.80948 1.02429 1.86069 1.18037 1.31260 1.89088 1.18873 0.82912 0.93731 0.99006 1.21169 0.92080 0.99373 1.06297 1.21083 0.96739 0.94488 1.03193 1.17709 0.82064 0.94749 1.02493 1.55247 1.13377 1.31939 1.74557 1.19509 0.94387 0.81333 0.94582 1.21425 1.41758 0.96221 0.98475 0.94987 1.25804 0.95056 0.95453 1.01800 1.70053 1.47173 1.04403 1.36295 0.85908 0.79350 0.79723 0.79385 1.17841 1.20550 1.16243 1.02003 0.72606 0.72903 0.74861 1.93563 1.47059 1.74968 1.81315 1.93509 1.69523 1.71249 1.62277 1.30464 1.10637 1.14215 1.22572 1.21187 0.96377 0.90889 0.96580 1.21570 0.98519 1.00961 0.94561 1.20762 0.92321 0.94128 0.95473 1.21031 1.03671 0.98201 0.94722 1.21519 1.01735 0.94708 0.98230 1.21098 0.92669 0.99308 0.92446 1.21094 0.92519 0.99080 1.00566 1.20410 0.93846 0.96035 1.04871 0.88016 0.92172 0.91788 0.90650 0.91329 0.81814 0.84457 0.93462 0.92544 0.92146 0.83451 0.81370 0.88913 0.89241 0.89858 0.82370 0.85259 0.85115 0.84090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 10.28 71.98 0.74 -1.17 16 2 C 0.04 0.70 5.46 71.98 0.39 1.09 16 3 O -0.33 -8.74 10.14 -93.61 -0.95 -9.69 16 4 C 0.10 3.08 6.69 22.49 0.15 3.23 16 5 C -0.17 -4.84 9.03 22.35 0.20 -4.64 16 6 C -0.13 -4.53 8.45 22.39 0.19 -4.34 16 7 C 0.13 5.11 6.08 38.15 0.23 5.34 16 8 N -0.93 -40.71 2.99 -342.98 -1.02 -41.73 16 9 C 0.23 10.74 3.54 85.63 0.30 11.05 16 10 C -0.54 -31.44 8.41 25.60 0.22 -31.23 16 11 H 0.03 2.12 8.06 -2.91 -0.02 2.10 16 12 C 0.02 1.04 5.47 84.66 0.46 1.50 16 13 N -0.94 -58.97 13.96 21.45 0.30 -58.67 16 14 Si 0.93 42.29 27.47 68.60 1.88 44.18 16 15 H -0.25 -10.72 7.11 99.48 0.71 -10.01 16 16 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 17 H -0.24 -9.78 6.54 99.48 0.65 -9.12 16 18 S 2.68 112.51 5.09 -56.49 -0.29 112.22 16 19 O -0.98 -48.65 16.48 -128.00 -2.11 -50.76 16 20 O -0.98 -41.65 14.32 -128.00 -1.83 -43.48 16 21 C -0.69 -21.98 5.94 22.27 0.13 -21.85 16 22 C -0.03 -0.78 8.66 22.27 0.19 -0.59 16 23 C -0.14 -2.49 9.70 22.27 0.22 -2.28 16 24 C -0.03 -0.45 5.88 -19.87 -0.12 -0.57 16 25 C -0.12 -1.04 10.01 71.23 0.71 -0.32 16 26 C -0.14 -3.02 9.70 22.27 0.22 -2.81 16 27 C -0.04 -1.04 9.52 22.27 0.21 -0.83 16 28 C -0.11 -4.53 9.06 22.39 0.20 -4.33 16 29 C -0.13 -4.60 9.98 22.35 0.22 -4.38 16 30 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 33 H 0.08 1.07 7.67 -2.39 -0.02 1.06 16 34 H 0.07 1.09 7.65 -2.38 -0.02 1.07 16 35 H 0.16 3.30 6.29 -2.91 -0.02 3.28 16 36 H 0.14 4.21 3.44 -2.91 -0.01 4.20 16 37 H 0.05 2.18 6.70 -2.39 -0.02 2.17 16 38 H 0.06 2.48 7.22 -2.39 -0.02 2.46 16 39 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 40 H 0.15 3.39 5.96 -2.91 -0.02 3.37 16 41 H 0.17 1.75 8.06 -2.92 -0.02 1.73 16 42 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 43 H 0.09 0.52 8.09 -2.39 -0.02 0.50 16 44 H 0.08 0.59 8.09 -2.39 -0.02 0.57 16 45 H 0.16 2.39 8.06 -2.91 -0.02 2.37 16 46 H 0.13 3.95 7.78 -2.91 -0.02 3.93 16 47 H 0.13 6.03 6.17 -2.91 -0.02 6.01 16 48 H 0.14 4.43 8.06 -2.91 -0.02 4.41 16 Total: -1.00 -80.69 401.22 1.79 -78.90 By element: Atomic # 1 Polarization: 25.22 SS G_CDS: 0.93 Total: 26.14 kcal Atomic # 6 Polarization: -62.00 SS G_CDS: 4.88 Total: -57.12 kcal Atomic # 7 Polarization: -99.68 SS G_CDS: -0.72 Total: -100.40 kcal Atomic # 8 Polarization: -99.03 SS G_CDS: -4.89 Total: -103.93 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 1.88 Total: 44.18 kcal Atomic # 16 Polarization: 112.51 SS G_CDS: -0.29 Total: 112.22 kcal Total: -80.69 1.79 -78.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005652803.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.029 kcal (2) G-P(sol) polarization free energy of solvation -80.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds