Wall clock time and date at job start Tue Mar 31 2020 06:22:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31559 * 1 3 3 Si 1.86791 * 120.00615 * 2 1 4 4 H 1.48499 * 109.47366 * 240.00069 * 3 2 1 5 5 H 1.48497 * 109.47339 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47143 * 120.00087 * 3 2 1 7 7 C 1.38649 * 119.99307 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99594 * 179.97438 * 7 2 1 9 9 O 1.34805 * 120.00109 * 0.02562 * 7 2 1 10 10 C 1.35653 * 116.99549 * 185.05589 * 9 7 2 11 11 C 1.39080 * 119.91756 * 354.44025 * 10 9 7 12 12 C 1.37708 * 120.09206 * 180.02562 * 11 10 9 13 13 C 1.39820 * 119.90853 * 359.97438 * 12 11 10 14 14 C 1.47344 * 120.08859 * 180.02562 * 13 12 11 15 15 N 1.29852 * 120.00201 * 180.02562 * 14 13 12 16 16 N 1.40102 * 119.99900 * 179.97438 * 15 14 13 17 17 C 1.34782 * 119.99684 * 180.02562 * 16 15 14 18 18 O 1.21623 * 120.00256 * 0.02562 * 17 16 15 19 19 C 1.47536 * 119.99613 * 180.02562 * 17 16 15 20 20 C 1.38585 * 119.79100 * 359.97438 * 19 17 16 21 21 C 1.40194 * 119.52092 * 179.73017 * 20 19 17 22 22 C 1.40699 * 121.04034 * 180.28187 * 21 20 19 23 23 C 1.36062 * 119.67929 * 179.97438 * 22 21 20 24 24 C 1.39403 * 120.97344 * 0.02562 * 23 22 21 25 25 C 1.36106 * 121.01963 * 359.97438 * 24 23 22 26 26 C 1.40582 * 119.72391 * 359.97438 * 25 24 23 27 27 C 1.40467 * 120.98510 * 180.02562 * 26 25 24 28 28 C 1.36378 * 119.99131 * 180.02562 * 27 26 25 29 29 O 1.35747 * 119.64983 * 179.97438 * 28 27 26 30 30 C 1.39823 * 119.82786 * 0.27578 * 13 12 11 31 31 C 1.37717 * 119.90612 * 359.46514 * 30 13 12 32 32 H 0.97002 * 119.99471 * 0.02562 * 1 2 3 33 33 H 1.07997 * 119.95219 * 359.97438 * 11 10 9 34 34 H 1.07998 * 120.04587 * 180.02562 * 12 11 10 35 35 H 1.08000 * 119.99405 * 359.97438 * 14 13 12 36 36 H 0.96995 * 119.99906 * 359.97438 * 16 15 14 37 37 H 1.08001 * 120.23605 * 359.97438 * 20 19 17 38 38 H 1.08002 * 120.16583 * 359.95316 * 22 21 20 39 39 H 1.08001 * 119.51734 * 179.97438 * 23 22 21 40 40 H 1.07991 * 119.49235 * 179.97438 * 24 23 22 41 41 H 1.07995 * 120.13506 * 179.97438 * 25 24 23 42 42 H 1.07996 * 120.00383 * 0.02562 * 27 26 25 43 43 H 0.96704 * 113.99334 * 90.00398 * 29 28 27 44 44 H 1.08003 * 120.04690 * 179.72764 * 30 13 12 45 45 H 1.08006 * 119.95374 * 180.22819 * 31 30 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6176 0.0000 4 1 3.1035 1.6962 -1.2125 5 1 1.2849 2.7464 0.0006 6 1 3.1035 1.6961 1.2125 7 6 2.0087 -1.2008 -0.0005 8 1 3.0887 -1.2009 -0.0010 9 8 1.3345 -2.3682 -0.0016 10 6 2.0692 -3.5036 0.1045 11 6 3.4583 -3.4348 0.0912 12 6 4.2076 -4.5852 0.1981 13 6 3.5701 -5.8236 0.3206 14 6 4.3680 -7.0570 0.4358 15 7 3.7742 -8.2062 0.5490 16 7 4.5329 -9.3789 0.6580 17 6 3.9166 -10.5718 0.7750 18 8 2.7018 -10.6303 0.7855 19 6 4.7156 -11.8068 0.8904 20 6 6.0995 -11.7352 0.8774 21 6 6.8532 -12.9116 0.9931 22 6 8.2597 -12.8754 0.9895 23 6 8.9637 -14.0341 1.1040 24 6 8.3122 -15.2606 1.2246 25 6 6.9532 -15.3351 1.2319 26 6 6.1900 -14.1600 1.1169 27 6 4.7861 -14.2061 1.1220 28 6 4.0658 -13.0536 1.0086 29 8 2.7093 -13.1063 1.0138 30 6 2.1734 -5.8891 0.3283 31 6 1.4313 -4.7335 0.2263 32 1 -0.4849 0.8401 -0.0004 33 1 3.9498 -2.4779 -0.0039 34 1 5.2862 -4.5309 0.1881 35 1 5.4467 -7.0051 0.4252 36 1 5.5017 -9.3324 0.6485 37 1 6.5938 -10.7796 0.7828 38 1 8.7781 -11.9326 0.8960 39 1 10.0433 -14.0033 1.1005 40 1 8.8946 -16.1655 1.3136 41 1 6.4632 -16.2929 1.3257 42 1 4.2772 -15.1540 1.2156 43 1 2.3164 -13.0350 1.8945 44 1 1.6774 -6.8442 0.4184 45 1 0.3524 -4.7829 0.2359 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005740166.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:30 Heat of formation + Delta-G solvation = 15.943734 kcal Electronic energy + Delta-G solvation = -30544.210657 eV Core-core repulsion = 26072.904080 eV Total energy + Delta-G solvation = -4471.306577 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 376.126 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.19088 -39.55126 -39.10830 -38.20013 -37.04042 -35.82237 -35.61603 -33.34103 -32.61539 -32.08657 -30.51786 -30.32316 -29.30560 -28.37114 -25.65584 -24.90234 -23.58956 -22.88042 -22.47545 -22.04291 -20.98018 -20.29464 -19.09719 -18.47456 -18.06325 -17.57677 -17.09977 -16.63937 -16.46873 -15.85915 -15.38445 -15.28898 -14.96433 -14.85297 -14.61096 -14.38640 -14.32427 -13.92969 -13.89284 -13.77617 -13.71991 -13.54436 -13.03824 -12.82813 -12.59178 -12.46546 -12.02881 -11.79613 -11.64115 -11.47317 -11.30389 -11.22902 -11.12736 -10.92975 -10.81350 -10.53735 -10.50739 -10.09544 -9.89222 -9.45002 -9.24713 -9.04094 -8.74976 -8.40366 -8.29610 -7.12680 -6.58758 -4.15246 -0.20678 0.28029 1.31894 1.46377 2.07922 2.20561 2.43343 2.78378 3.06460 3.07491 3.10852 3.22580 3.55064 3.80721 3.86430 3.97948 4.11185 4.31632 4.44470 4.55443 4.63258 4.67344 4.72447 4.84291 4.85384 4.98865 5.05090 5.14209 5.19043 5.28588 5.33317 5.52719 5.55922 5.58522 5.72847 5.76663 5.93070 5.95030 5.97854 6.12789 6.14061 6.33609 6.36958 6.61621 6.79790 6.95014 7.02010 7.17954 7.19651 7.31679 7.39029 7.62245 7.69915 7.86018 8.43050 8.85694 9.53490 10.57978 Molecular weight = 376.13amu Principal moments of inertia in cm(-1) A = 0.022771 B = 0.001319 C = 0.001248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.329922 B =21227.038859 C =22435.158846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.853 5.853 2 C 0.041 3.959 3 Si 0.944 3.056 4 H -0.268 1.268 5 H -0.277 1.277 6 H -0.268 1.268 7 C -0.394 4.394 8 H 0.096 0.904 9 O -0.165 6.165 10 C 0.170 3.830 11 C -0.242 4.242 12 C -0.034 4.034 13 C -0.174 4.174 14 C 0.151 3.849 15 N -0.264 5.264 16 N -0.584 5.584 17 C 0.571 3.429 18 O -0.485 6.485 19 C -0.147 4.147 20 C -0.050 4.050 21 C -0.071 4.071 22 C -0.094 4.094 23 C -0.122 4.122 24 C -0.102 4.102 25 C -0.113 4.113 26 C -0.017 4.017 27 C -0.145 4.145 28 C 0.167 3.833 29 O -0.477 6.477 30 C -0.024 4.024 31 C -0.201 4.201 32 H 0.274 0.726 33 H 0.132 0.868 34 H 0.113 0.887 35 H 0.107 0.893 36 H 0.375 0.625 37 H 0.135 0.865 38 H 0.131 0.869 39 H 0.126 0.874 40 H 0.126 0.874 41 H 0.131 0.869 42 H 0.141 0.859 43 H 0.397 0.603 44 H 0.126 0.874 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.316 -27.361 3.946 33.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C -0.165 4.165 3 Si 0.768 3.232 4 H -0.193 1.193 5 H -0.202 1.202 6 H -0.193 1.193 7 C -0.470 4.470 8 H 0.113 0.887 9 O -0.066 6.066 10 C 0.113 3.887 11 C -0.261 4.261 12 C -0.054 4.054 13 C -0.179 4.179 14 C -0.057 4.057 15 N -0.070 5.070 16 N -0.327 5.327 17 C 0.357 3.643 18 O -0.356 6.356 19 C -0.152 4.152 20 C -0.069 4.069 21 C -0.071 4.071 22 C -0.112 4.112 23 C -0.140 4.140 24 C -0.120 4.120 25 C -0.131 4.131 26 C -0.018 4.018 27 C -0.164 4.164 28 C 0.120 3.880 29 O -0.288 6.288 30 C -0.045 4.045 31 C -0.220 4.220 32 H 0.084 0.916 33 H 0.149 0.851 34 H 0.131 0.869 35 H 0.124 0.876 36 H 0.213 0.787 37 H 0.153 0.847 38 H 0.149 0.851 39 H 0.144 0.856 40 H 0.144 0.856 41 H 0.149 0.851 42 H 0.159 0.841 43 H 0.255 0.745 44 H 0.144 0.856 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 17.208 -27.845 3.395 32.908 hybrid contribution 1.954 1.197 0.400 2.326 sum 19.162 -26.648 3.794 33.041 Atomic orbital electron populations 1.70033 1.06085 1.28224 1.44309 1.25367 0.95886 0.99074 0.96130 0.85729 0.78742 0.79392 0.79318 1.19331 1.20151 1.19330 1.21384 0.92006 0.80653 1.52928 0.88666 1.83946 1.34848 1.11727 1.76034 1.19600 0.90345 0.87902 0.90880 1.21032 0.93630 0.98903 1.12570 1.20771 0.98349 0.91022 0.95286 1.17773 0.92727 0.89707 1.17651 1.24455 0.97015 0.90897 0.93293 1.75159 1.22045 0.92206 1.17556 1.46833 1.07586 1.04666 1.73576 1.17714 0.87735 0.81262 0.77568 1.90839 1.12947 1.85858 1.45990 1.20337 0.93606 0.93565 1.07693 1.21482 0.92133 0.97998 0.95282 1.17983 0.93843 0.92521 1.02749 1.21101 0.92240 0.99132 0.98692 1.20901 1.00391 0.92420 1.00318 1.20966 0.94642 0.98108 0.98331 1.21069 0.94124 0.97305 1.00639 1.18012 0.92868 0.93058 0.97844 1.21213 0.92729 0.98672 1.03738 1.17928 0.84044 0.90117 0.95869 1.84813 1.14476 1.95162 1.34350 1.20922 0.92504 0.97367 0.93677 1.20207 0.99953 0.90028 1.11827 0.91640 0.85062 0.86908 0.87628 0.78680 0.84742 0.85116 0.85594 0.85622 0.85142 0.84093 0.74493 0.85626 0.86068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.17 13.67 55.48 0.76 -23.41 16 2 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 3 Si 0.94 19.55 29.55 -169.99 -5.02 14.53 16 4 H -0.27 -5.37 7.11 56.52 0.40 -4.96 16 5 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 6 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 7 C -0.39 -10.50 9.48 30.88 0.29 -10.21 16 8 H 0.10 2.30 5.19 -52.49 -0.27 2.03 16 9 O -0.16 -4.53 9.75 0.42 0.00 -4.53 16 10 C 0.17 3.94 6.65 -38.95 -0.26 3.68 16 11 C -0.24 -4.88 9.15 -39.46 -0.36 -5.24 16 12 C -0.03 -0.56 9.78 -39.18 -0.38 -0.94 16 13 C -0.17 -2.97 5.87 -105.01 -0.62 -3.58 16 14 C 0.15 2.14 10.75 -14.69 -0.16 1.98 16 15 N -0.26 -4.21 10.15 32.14 0.33 -3.89 16 16 N -0.58 -7.54 6.21 30.46 0.19 -7.35 16 17 C 0.57 8.10 7.88 -12.47 -0.10 8.01 16 18 O -0.48 -8.82 15.43 -16.87 -0.26 -9.08 16 19 C -0.15 -1.59 5.88 -104.89 -0.62 -2.21 16 20 C -0.05 -0.40 9.28 -38.72 -0.36 -0.76 16 21 C -0.07 -0.55 5.74 -106.83 -0.61 -1.16 16 22 C -0.09 -0.55 9.76 -39.43 -0.38 -0.93 16 23 C -0.12 -0.62 9.95 -39.93 -0.40 -1.02 16 24 C -0.10 -0.52 9.95 -39.91 -0.40 -0.91 16 25 C -0.11 -0.67 9.76 -39.46 -0.38 -1.06 16 26 C -0.02 -0.14 5.74 -106.77 -0.61 -0.75 16 27 C -0.15 -1.19 9.64 -39.41 -0.38 -1.57 16 28 C 0.17 1.74 6.65 -39.17 -0.26 1.48 16 29 O -0.48 -5.36 11.48 -41.08 -0.47 -5.83 16 30 C -0.02 -0.46 9.57 -39.18 -0.37 -0.84 16 31 C -0.20 -4.23 9.97 -39.46 -0.39 -4.63 16 32 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 33 H 0.13 2.60 5.62 -52.49 -0.29 2.30 16 34 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 35 H 0.11 1.08 8.02 -52.49 -0.42 0.66 16 36 H 0.37 3.30 6.64 -182.60 -1.21 2.09 16 37 H 0.13 0.71 6.35 -52.49 -0.33 0.38 16 38 H 0.13 0.48 8.06 -52.49 -0.42 0.05 16 39 H 0.13 0.37 8.06 -52.49 -0.42 -0.05 16 40 H 0.13 0.35 8.06 -52.49 -0.42 -0.07 16 41 H 0.13 0.51 8.06 -52.49 -0.42 0.08 16 42 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 43 H 0.40 2.95 9.06 45.56 0.41 3.36 16 44 H 0.13 2.32 7.55 -52.48 -0.40 1.92 16 45 H 0.12 2.49 8.06 -52.48 -0.42 2.07 16 LS Contribution 397.64 15.07 5.99 5.99 Total: -1.00 -35.39 397.64 -9.95 -45.35 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: -4.61 Total: 7.89 kcal Atomic # 6 Polarization: -12.81 SS G_CDS: -6.85 Total: -19.67 kcal Atomic # 7 Polarization: -35.92 SS G_CDS: 1.27 Total: -34.64 kcal Atomic # 8 Polarization: -18.72 SS G_CDS: -0.73 Total: -19.44 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -5.02 Total: 14.53 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -35.39 -9.95 -45.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005740166.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.290 kcal (2) G-P(sol) polarization free energy of solvation -35.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds