Wall clock time and date at job start Tue Mar 31 2020 05:52:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38126 * 120.02657 * 2 1 4 4 C 1.38371 * 120.07673 * 180.27580 * 3 2 1 5 5 Br 1.89093 * 119.93729 * 179.72018 * 4 3 2 6 6 C 1.38398 * 120.12243 * 359.69430 * 4 3 2 7 7 C 1.50702 * 119.97170 * 180.02562 * 6 4 3 8 8 C 1.53008 * 109.46840 * 120.67796 * 7 6 4 9 9 C 1.53003 * 109.47310 * 240.67686 * 7 6 4 10 10 C 1.38149 * 120.05167 * 0.02621 * 6 4 3 11 11 Br 1.89098 * 120.03760 * 179.97438 * 10 6 4 12 12 C 1.38835 * 120.02177 * 179.71745 * 2 1 3 13 13 O 1.35766 * 120.06231 * 0.02702 * 12 2 1 14 14 C 1.34826 * 116.99886 * 269.72106 * 13 12 2 15 15 H 1.07992 * 119.99758 * 359.72423 * 14 13 12 16 16 C 1.38646 * 119.99517 * 180.02562 * 14 13 12 17 17 N 1.31561 * 120.00670 * 0.02562 * 16 14 13 18 18 Si 1.86808 * 119.99775 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46899 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.46731 * 119.99807 * 18 16 14 21 21 H 1.48491 * 109.47581 * 240.00256 * 18 16 14 22 22 H 1.08999 * 109.47177 * 270.28297 * 1 2 3 23 23 H 1.09004 * 109.47160 * 30.27899 * 1 2 3 24 24 H 1.08998 * 109.47372 * 150.28134 * 1 2 3 25 25 H 1.08004 * 119.96302 * 359.97438 * 3 2 1 26 26 H 1.08998 * 109.47087 * 0.68088 * 7 6 4 27 27 H 1.08996 * 109.47049 * 67.97703 * 8 7 6 28 28 H 1.08999 * 109.46993 * 187.97692 * 8 7 6 29 29 H 1.08994 * 109.47118 * 307.98010 * 8 7 6 30 30 H 1.08998 * 109.47225 * 184.91731 * 9 7 6 31 31 H 1.08999 * 109.47130 * 304.91601 * 9 7 6 32 32 H 1.09000 * 109.46723 * 64.91757 * 9 7 6 33 33 H 0.96997 * 120.00287 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1959 0.0000 4 6 3.5819 1.1971 -0.0058 5 35 4.5241 2.8366 -0.0137 6 6 4.2775 0.0006 -0.0052 7 6 5.7845 0.0059 -0.0109 8 6 6.3017 -0.7249 1.2299 9 6 6.2923 -0.7021 -1.2686 10 6 3.5914 -1.1985 0.0007 11 35 4.5423 -2.8330 0.0008 12 6 2.2016 -1.2021 0.0059 13 8 1.5245 -2.3788 0.0112 14 6 1.2238 -2.9066 1.2149 15 1 1.5245 -2.3970 2.1182 16 6 0.5340 -4.1068 1.2927 17 7 0.1733 -4.7309 0.1921 18 14 0.1180 -4.8385 2.9604 19 1 0.6316 -3.9492 4.0331 20 1 -1.3555 -4.9694 3.0897 21 1 0.7468 -6.1780 3.0841 22 1 -0.3633 0.0051 1.0276 23 1 -0.3634 0.8875 -0.5182 24 1 -0.3634 -0.8925 -0.5094 25 1 1.6580 2.1311 -0.0004 26 1 6.1442 1.0348 -0.0028 27 1 6.0629 -1.7856 1.1526 28 1 7.3821 -0.6000 1.3011 29 1 5.8285 -0.3099 2.1197 30 1 7.3791 -0.7756 -1.2304 31 1 5.8621 -1.7023 -1.3212 32 1 5.9973 -0.1329 -2.1501 33 1 -0.3089 -5.5707 0.2466 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005792815.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:35 Heat of formation + Delta-G solvation = -1.400215 kcal Electronic energy + Delta-G solvation = -18781.217737 eV Core-core repulsion = 15707.312154 eV Total energy + Delta-G solvation = -3073.905584 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 375.941 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.78120 -37.17032 -35.21051 -32.36287 -31.60190 -31.42102 -29.78774 -28.02785 -26.92943 -26.36514 -24.76561 -22.10309 -21.37098 -19.86804 -17.96819 -16.64291 -16.00952 -15.05250 -14.33305 -14.09022 -14.04947 -13.85380 -13.42146 -13.16517 -12.72952 -12.61355 -12.16290 -11.97665 -11.80994 -11.55660 -11.50970 -11.28919 -11.08983 -10.98507 -10.83267 -10.58457 -10.31980 -10.17483 -9.83566 -9.76070 -9.61503 -8.66212 -8.30040 -8.14515 -7.81877 -6.14463 -3.84911 1.39657 1.46145 1.74015 2.30036 3.21252 3.25688 3.29581 3.72427 4.22183 4.73265 4.99759 5.13598 5.22753 5.35592 5.39356 5.53738 5.59978 5.70532 5.86326 6.01371 6.04129 6.11278 6.16570 6.18133 6.26232 6.37970 6.43331 6.48898 6.67416 6.68259 6.90328 7.12238 7.33945 8.21012 9.28020 9.89457 11.04160 Molecular weight = 375.94amu Principal moments of inertia in cm(-1) A = 0.014319 B = 0.005009 C = 0.004070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1954.983039 B = 5588.684412 C = 6877.778918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.113 4.113 3 C -0.067 4.067 4 C -0.115 4.115 5 Br -0.060 7.060 6 C -0.019 4.019 7 C -0.067 4.067 8 C -0.166 4.166 9 C -0.165 4.165 10 C -0.114 4.114 11 Br -0.017 7.017 12 C 0.191 3.809 13 O -0.223 6.223 14 C -0.361 4.361 15 H 0.070 0.930 16 C 0.038 3.962 17 N -0.877 5.877 18 Si 0.926 3.074 19 H -0.272 1.272 20 H -0.280 1.280 21 H -0.280 1.280 22 H 0.070 0.930 23 H 0.056 0.944 24 H 0.084 0.916 25 H 0.131 0.869 26 H 0.089 0.911 27 H 0.081 0.919 28 H 0.056 0.944 29 H 0.053 0.947 30 H 0.057 0.943 31 H 0.080 0.920 32 H 0.052 0.948 33 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.626 11.789 -0.459 15.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.115 4.115 3 C -0.088 4.088 4 C -0.195 4.195 5 Br 0.025 6.975 6 C -0.023 4.023 7 C -0.085 4.085 8 C -0.223 4.223 9 C -0.222 4.222 10 C -0.195 4.195 11 Br 0.070 6.930 12 C 0.143 3.857 13 O -0.135 6.135 14 C -0.437 4.437 15 H 0.087 0.913 16 C -0.162 4.162 17 N -0.517 5.517 18 Si 0.752 3.248 19 H -0.196 1.196 20 H -0.206 1.206 21 H -0.205 1.205 22 H 0.088 0.912 23 H 0.075 0.925 24 H 0.103 0.897 25 H 0.149 0.851 26 H 0.107 0.893 27 H 0.100 0.900 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.098 0.902 32 H 0.071 0.929 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 10.164 11.489 -0.674 15.354 hybrid contribution -0.555 -0.184 0.915 1.086 sum 9.609 11.304 0.241 14.838 Atomic orbital electron populations 1.20577 0.89626 1.02820 1.02606 1.20349 0.97482 0.91439 1.02237 1.20867 0.91566 0.98150 0.98168 1.21300 0.94233 0.89947 1.13976 1.96531 1.76165 1.26676 1.98098 1.19385 0.95986 0.90014 0.96957 1.20374 0.89359 1.01809 0.96980 1.22277 1.00295 1.03360 0.96411 1.22235 1.00900 1.02961 0.96134 1.22277 0.94476 0.91143 1.11625 1.96401 1.72432 1.27501 1.96682 1.18890 0.88430 0.88944 0.89468 1.83847 1.70936 1.29275 1.29476 1.20766 1.36792 1.05307 0.80847 0.91262 1.24926 0.97445 0.95714 0.98139 1.70023 1.38921 1.16582 1.26172 0.85882 0.78265 0.79253 0.81425 1.19617 1.20604 1.20544 0.91169 0.92518 0.89691 0.85084 0.89307 0.90042 0.92541 0.92803 0.92348 0.90198 0.92924 0.92836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.74 9.78 36.00 0.35 -1.39 16 2 C -0.11 -2.15 5.90 -104.44 -0.62 -2.76 16 3 C -0.07 -1.10 9.44 -39.57 -0.37 -1.47 16 4 C -0.11 -1.86 6.22 -39.47 -0.25 -2.10 16 5 Br -0.06 -0.79 31.49 -68.01 -2.14 -2.93 16 6 C -0.02 -0.34 4.77 -104.60 -0.50 -0.84 16 7 C -0.07 -0.98 2.86 -91.76 -0.26 -1.24 16 8 C -0.17 -2.35 8.82 37.16 0.33 -2.02 16 9 C -0.16 -2.29 8.95 37.16 0.33 -1.96 16 10 C -0.11 -2.29 5.96 -39.34 -0.23 -2.53 16 11 Br -0.02 -0.34 25.99 -68.01 -1.77 -2.11 16 12 C 0.19 4.24 5.55 -39.08 -0.22 4.02 16 13 O -0.22 -5.86 8.08 0.01 0.00 -5.86 16 14 C -0.36 -9.67 9.76 30.88 0.30 -9.37 16 15 H 0.07 1.83 7.76 -52.49 -0.41 1.42 16 16 C 0.04 1.04 5.49 -17.52 -0.10 0.94 16 17 N -0.88 -25.50 13.67 55.48 0.76 -24.74 16 18 Si 0.93 20.95 29.55 -169.99 -5.02 15.93 16 19 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 20 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 21 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 22 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 23 H 0.06 0.80 8.09 -51.93 -0.42 0.38 16 24 H 0.08 1.71 7.53 -51.93 -0.39 1.32 16 25 H 0.13 1.78 8.06 -52.48 -0.42 1.36 16 26 H 0.09 1.21 5.82 -51.93 -0.30 0.91 16 27 H 0.08 1.24 4.56 -51.93 -0.24 1.00 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.05 0.78 8.13 -51.93 -0.42 0.36 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.08 1.22 4.50 -51.93 -0.23 0.99 16 32 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 308.93 15.07 4.66 4.66 Total: -1.00 -28.53 308.93 -8.41 -36.94 By element: Atomic # 1 Polarization: 2.48 SS G_CDS: -3.66 Total: -1.18 kcal Atomic # 6 Polarization: -19.48 SS G_CDS: -1.23 Total: -20.71 kcal Atomic # 7 Polarization: -25.50 SS G_CDS: 0.76 Total: -24.74 kcal Atomic # 8 Polarization: -5.86 SS G_CDS: 0.00 Total: -5.86 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Atomic # 35 Polarization: -1.13 SS G_CDS: -3.91 Total: -5.04 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -28.53 -8.41 -36.94 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005792815.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.544 kcal (2) G-P(sol) polarization free energy of solvation -28.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds