Wall clock time and date at job start Tue Mar 31 2020 05:03:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30633 * 1 3 3 Si 1.86801 * 120.00290 * 2 1 4 4 H 1.48498 * 109.47075 * 270.00008 * 3 2 1 5 5 H 1.48506 * 109.46750 * 29.99980 * 3 2 1 6 6 H 1.48500 * 109.47338 * 149.99951 * 3 2 1 7 7 C 1.40127 * 119.99818 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99784 * 180.02562 * 7 2 1 9 9 C 1.46192 * 119.99726 * 0.02562 * 7 2 1 10 10 O 1.21724 * 120.00331 * 359.97438 * 9 7 2 11 11 N 1.34784 * 119.99906 * 179.97438 * 9 7 2 12 12 C 1.39064 * 120.00175 * 185.28086 * 11 9 7 13 13 C 1.39279 * 119.93623 * 33.64325 * 12 11 9 14 14 C 1.37600 * 120.06948 * 180.02562 * 13 12 11 15 15 C 1.39829 * 119.93581 * 359.97438 * 14 13 12 16 16 C 1.47464 * 120.07328 * 179.97438 * 15 14 13 17 17 O 1.21511 * 119.99418 * 0.02562 * 16 15 14 18 18 O 1.34747 * 120.00536 * 180.27982 * 16 15 14 19 19 C 1.45195 * 117.00350 * 179.72985 * 18 16 15 20 20 C 1.50697 * 109.47507 * 180.02562 * 19 18 16 21 21 C 1.36131 * 120.16943 * 359.72334 * 20 19 18 22 22 C 1.39332 * 120.98852 * 179.77734 * 21 20 19 23 23 C 1.36126 * 120.99242 * 0.47511 * 22 21 20 24 24 C 1.40505 * 119.64503 * 359.78212 * 23 22 21 25 25 C 1.40548 * 121.27573 * 180.02562 * 24 23 22 26 26 C 1.36090 * 119.65311 * 179.97438 * 25 24 23 27 27 C 1.39387 * 120.98714 * 0.02562 * 26 25 24 28 28 C 1.36088 * 120.99748 * 359.95873 * 27 26 25 29 29 C 1.40502 * 120.17657 * 180.02562 * 20 19 18 30 30 C 1.39837 * 119.86238 * 0.25807 * 15 14 13 31 31 C 1.37607 * 119.93292 * 359.51058 * 30 15 14 32 32 H 0.97002 * 119.99683 * 0.02562 * 1 2 3 33 33 H 0.97002 * 119.99578 * 5.27557 * 11 9 7 34 34 H 1.08000 * 119.96202 * 359.97438 * 13 12 11 35 35 H 1.08002 * 120.02971 * 179.97438 * 14 13 12 36 36 H 1.09004 * 109.47088 * 299.99834 * 19 18 16 37 37 H 1.09007 * 109.47380 * 59.99730 * 19 18 16 38 38 H 1.07999 * 119.50162 * 0.02562 * 21 20 19 39 39 H 1.08004 * 119.50639 * 180.23947 * 22 21 20 40 40 H 1.07990 * 120.18013 * 179.79953 * 23 22 21 41 41 H 1.07999 * 120.17575 * 359.95627 * 25 24 23 42 42 H 1.07996 * 119.51018 * 180.02562 * 26 25 24 43 43 H 1.08001 * 119.49900 * 179.97438 * 27 26 25 44 44 H 1.08000 * 120.16877 * 180.02562 * 28 27 26 45 45 H 1.08008 * 120.03104 * 179.72042 * 30 15 14 46 46 H 1.07997 * 119.96606 * 180.21364 * 31 30 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 2.4879 2.0463 -1.4001 5 1 1.4378 2.6526 0.7001 6 1 3.5380 1.4401 0.7000 7 6 2.0069 -1.2136 0.0005 8 1 3.0869 -1.2136 0.0010 9 6 1.2759 -2.4796 0.0005 10 8 0.0586 -2.4795 0.0005 11 7 1.9497 -3.6469 0.0005 12 6 1.2588 -4.8486 -0.1103 13 6 0.0984 -4.9150 -0.8778 14 6 -0.5877 -6.1026 -0.9889 15 6 -0.1186 -7.2437 -0.3308 16 6 -0.8518 -8.5178 -0.4474 17 8 -1.8645 -8.5769 -1.1163 18 8 -0.4017 -9.6152 0.1920 19 6 -1.1772 -10.8329 0.0371 20 6 -0.5265 -11.9456 0.8178 21 6 0.6184 -11.7125 1.5165 22 6 1.2318 -12.7275 2.2478 23 6 0.7094 -13.9842 2.2772 24 6 -0.4684 -14.2640 1.5642 25 6 -1.0377 -15.5491 1.5711 26 6 -2.1798 -15.7834 0.8691 27 6 -2.7956 -14.7670 0.1407 28 6 -2.2734 -13.5107 0.1109 29 6 -1.0947 -13.2306 0.8234 30 6 1.0440 -7.1727 0.4430 31 6 1.7284 -5.9834 0.5464 32 1 -0.4850 0.8401 -0.0004 33 1 2.9167 -3.6486 0.0778 34 1 -0.2636 -4.0332 -1.3855 35 1 -1.4876 -6.1532 -1.5839 36 1 -2.1880 -10.6700 0.4112 37 1 -1.2195 -11.1051 -1.0176 38 1 1.0555 -10.7249 1.5069 39 1 2.1375 -12.5150 2.7966 40 1 1.1975 -14.7618 2.8458 41 1 -0.5712 -16.3465 2.1305 42 1 -2.6154 -16.7715 0.8764 43 1 -3.7011 -14.9798 -0.4083 44 1 -2.7619 -12.7331 -0.4576 45 1 1.4062 -8.0514 0.9561 46 1 2.6283 -5.9289 1.1411 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005812912.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:19 Heat of formation + Delta-G solvation = -54.879894 kcal Electronic energy + Delta-G solvation = -31022.942662 eV Core-core repulsion = 26613.990853 eV Total energy + Delta-G solvation = -4408.951809 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 375.130 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.93770 -40.26756 -39.16882 -37.26497 -36.83617 -36.16623 -33.77491 -33.58706 -32.59977 -30.65179 -30.61922 -30.19963 -29.48989 -27.03974 -26.36540 -23.81770 -23.53682 -23.16951 -22.44906 -21.18232 -20.81470 -19.91453 -18.10830 -17.77422 -17.64048 -17.07239 -16.93270 -16.48509 -16.41304 -16.12165 -15.60943 -14.78140 -14.68744 -14.47499 -14.30625 -14.19505 -14.03037 -13.76721 -13.69566 -13.36960 -13.29788 -13.16492 -12.85530 -12.72452 -12.45414 -12.17008 -12.04588 -11.93286 -11.63684 -11.38649 -11.25977 -11.17357 -11.07304 -10.98891 -10.83578 -10.71145 -10.42675 -10.38014 -10.06469 -9.53199 -9.01921 -8.92979 -8.65981 -8.17725 -7.92157 -7.34135 -6.46383 -4.94729 0.18007 0.69838 1.10278 1.69403 1.82983 2.58885 2.68478 2.81153 3.01637 3.08509 3.11755 3.76486 3.89277 4.10168 4.16161 4.39011 4.43270 4.45861 4.50831 4.60663 4.67501 4.83167 4.91472 4.97784 5.05044 5.07059 5.10601 5.20395 5.27945 5.32568 5.42446 5.49727 5.61759 5.73862 5.77725 5.86594 5.89396 5.94559 6.04262 6.08865 6.17797 6.29820 6.38058 6.41792 6.47847 6.57143 6.67675 6.81291 6.86589 7.13384 7.19228 7.56039 7.84559 7.89573 8.00278 8.73114 9.01852 10.22525 10.43560 Molecular weight = 375.13amu Principal moments of inertia in cm(-1) A = 0.027132 B = 0.001425 C = 0.001368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.755092 B =19640.058610 C =20470.225420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.755 5.755 2 C 0.086 3.914 3 Si 0.915 3.085 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.535 4.535 8 H 0.074 0.926 9 C 0.537 3.463 10 O -0.554 6.554 11 N -0.694 5.694 12 C 0.238 3.762 13 C -0.147 4.147 14 C -0.028 4.028 15 C -0.188 4.188 16 C 0.520 3.480 17 O -0.519 6.519 18 O -0.353 6.353 19 C 0.111 3.889 20 C -0.082 4.082 21 C -0.092 4.092 22 C -0.112 4.112 23 C -0.108 4.108 24 C -0.051 4.051 25 C -0.104 4.104 26 C -0.119 4.119 27 C -0.114 4.114 28 C -0.111 4.111 29 C -0.041 4.041 30 C -0.035 4.035 31 C -0.196 4.196 32 H 0.274 0.726 33 H 0.397 0.603 34 H 0.148 0.852 35 H 0.131 0.869 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.137 0.863 39 H 0.127 0.873 40 H 0.127 0.873 41 H 0.127 0.873 42 H 0.123 0.877 43 H 0.124 0.876 44 H 0.128 0.872 45 H 0.129 0.871 46 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.742 -27.642 2.750 27.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.383 5.383 2 C -0.136 4.136 3 Si 0.739 3.261 4 H -0.195 1.195 5 H -0.202 1.202 6 H -0.187 1.187 7 C -0.571 4.571 8 H 0.092 0.908 9 C 0.345 3.655 10 O -0.436 6.436 11 N -0.335 5.335 12 C 0.135 3.865 13 C -0.168 4.168 14 C -0.047 4.047 15 C -0.190 4.190 16 C 0.367 3.633 17 O -0.408 6.408 18 O -0.270 6.270 19 C 0.037 3.963 20 C -0.082 4.082 21 C -0.110 4.110 22 C -0.130 4.130 23 C -0.126 4.126 24 C -0.051 4.051 25 C -0.122 4.122 26 C -0.137 4.137 27 C -0.132 4.132 28 C -0.129 4.129 29 C -0.041 4.041 30 C -0.054 4.054 31 C -0.217 4.217 32 H 0.085 0.915 33 H 0.231 0.769 34 H 0.165 0.835 35 H 0.149 0.851 36 H 0.103 0.897 37 H 0.103 0.897 38 H 0.155 0.845 39 H 0.145 0.855 40 H 0.145 0.855 41 H 0.145 0.855 42 H 0.141 0.859 43 H 0.142 0.858 44 H 0.146 0.854 45 H 0.147 0.853 46 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 0.405 -27.419 2.557 27.541 hybrid contribution 0.788 0.689 0.089 1.051 sum 1.193 -26.730 2.646 26.887 Atomic orbital electron populations 1.69971 1.07208 1.28088 1.33041 1.25761 0.94742 1.00640 0.92482 0.86245 0.80102 0.80698 0.79088 1.19479 1.20206 1.18707 1.20873 0.93914 0.88846 1.53468 0.90788 1.18478 0.87571 0.82024 0.77465 1.90661 1.13574 1.85834 1.53496 1.44321 1.10083 1.04526 1.74562 1.18302 0.92180 0.86477 0.89508 1.21303 0.96746 0.98206 1.00534 1.21045 0.98006 0.90396 0.95255 1.18742 0.99990 0.90678 1.09623 1.21259 0.82745 0.83634 0.75669 1.90809 1.25144 1.85422 1.39468 1.86482 1.53754 1.18706 1.68065 1.21582 0.94162 0.80446 1.00097 1.19393 0.96704 0.92578 0.99485 1.20817 0.94646 1.00147 0.95402 1.20926 1.00140 0.92959 0.98944 1.21060 0.95142 0.97355 0.99058 1.18024 0.95732 0.93439 0.97926 1.21029 0.96224 0.95536 0.99443 1.20872 0.96012 0.99345 0.97465 1.20874 1.00072 0.93068 0.99156 1.21093 0.95172 0.97551 0.99088 1.17730 0.95696 0.92342 0.98353 1.21005 0.92452 0.97300 0.94647 1.20857 1.03697 0.92957 1.04213 0.91516 0.76886 0.83452 0.85117 0.89701 0.89714 0.84531 0.85546 0.85479 0.85507 0.85945 0.85837 0.85418 0.85277 0.85570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -21.17 11.82 55.55 0.66 -20.52 16 2 C 0.09 2.22 5.50 -17.35 -0.10 2.12 16 3 Si 0.91 18.75 29.56 -169.99 -5.02 13.72 16 4 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 5 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 6 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 7 C -0.54 -13.90 9.54 -35.68 -0.34 -14.24 16 8 H 0.07 1.73 7.85 -52.49 -0.41 1.32 16 9 C 0.54 14.09 7.46 -13.06 -0.10 14.00 16 10 O -0.55 -16.52 12.69 5.17 0.07 -16.45 16 11 N -0.69 -14.41 5.30 -11.19 -0.06 -14.47 16 12 C 0.24 4.60 6.27 -83.81 -0.53 4.08 16 13 C -0.15 -2.98 8.62 -39.43 -0.34 -3.32 16 14 C -0.03 -0.50 9.58 -39.22 -0.38 -0.87 16 15 C -0.19 -3.06 5.88 -104.95 -0.62 -3.68 16 16 C 0.52 8.14 7.89 34.49 0.27 8.41 16 17 O -0.52 -9.16 16.13 -19.27 -0.31 -9.47 16 18 O -0.35 -4.63 7.91 -40.62 -0.32 -4.95 16 19 C 0.11 1.25 4.52 36.00 0.16 1.41 16 20 C -0.08 -0.86 5.89 -104.53 -0.62 -1.48 16 21 C -0.09 -0.91 9.32 -39.93 -0.37 -1.29 16 22 C -0.11 -0.93 9.95 -39.93 -0.40 -1.33 16 23 C -0.11 -0.87 9.77 -39.49 -0.39 -1.26 16 24 C -0.05 -0.47 5.74 -106.83 -0.61 -1.09 16 25 C -0.10 -0.78 9.77 -39.48 -0.39 -1.17 16 26 C -0.12 -0.83 9.95 -39.93 -0.40 -1.23 16 27 C -0.11 -0.86 9.95 -39.93 -0.40 -1.26 16 28 C -0.11 -0.99 9.40 -39.49 -0.37 -1.36 16 29 C -0.04 -0.42 5.74 -106.84 -0.61 -1.03 16 30 C -0.03 -0.51 9.60 -39.21 -0.38 -0.89 16 31 C -0.20 -3.07 9.94 -39.43 -0.39 -3.46 16 32 H 0.27 6.96 8.29 -40.82 -0.34 6.62 16 33 H 0.40 6.87 8.79 -40.82 -0.36 6.51 16 34 H 0.15 3.40 6.41 -52.49 -0.34 3.06 16 35 H 0.13 2.25 7.64 -52.49 -0.40 1.84 16 36 H 0.08 0.93 8.07 -51.93 -0.42 0.51 16 37 H 0.08 0.91 8.07 -51.93 -0.42 0.49 16 38 H 0.14 1.30 6.92 -52.49 -0.36 0.94 16 39 H 0.13 0.77 8.06 -52.48 -0.42 0.35 16 40 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 41 H 0.13 0.65 8.06 -52.49 -0.42 0.22 16 42 H 0.12 0.57 8.06 -52.49 -0.42 0.15 16 43 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 44 H 0.13 1.00 7.05 -52.49 -0.37 0.63 16 45 H 0.13 1.50 7.60 -52.48 -0.40 1.10 16 46 H 0.13 1.64 8.06 -52.49 -0.42 1.22 16 LS Contribution 400.03 15.07 6.03 6.03 Total: -1.00 -33.16 400.03 -11.39 -44.55 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: -5.15 Total: 10.47 kcal Atomic # 6 Polarization: -1.65 SS G_CDS: -7.27 Total: -8.92 kcal Atomic # 7 Polarization: -35.58 SS G_CDS: 0.60 Total: -34.98 kcal Atomic # 8 Polarization: -30.30 SS G_CDS: -0.57 Total: -30.87 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -5.02 Total: 13.72 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -33.16 -11.39 -44.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005812912.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.333 kcal (2) G-P(sol) polarization free energy of solvation -33.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds