Wall clock time and date at job start Tue Mar 31 2020 05:02:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36681 * 127.19135 * 2 1 4 4 S 1.76204 * 126.36039 * 359.97438 * 3 2 1 5 5 C 1.80999 * 99.99978 * 179.97438 * 4 3 2 6 6 C 1.50700 * 109.47347 * 180.02562 * 5 4 3 7 7 O 1.21284 * 119.99876 * 359.97438 * 6 5 4 8 8 N 1.34780 * 120.00011 * 179.97438 * 6 5 4 9 9 C 1.46505 * 119.99466 * 179.97438 * 8 6 5 10 10 C 1.50701 * 109.46666 * 90.00249 * 9 8 6 11 11 H 1.07997 * 120.00319 * 359.97438 * 10 9 8 12 12 C 1.37880 * 119.99870 * 179.97438 * 10 9 8 13 13 N 1.31508 * 119.99887 * 359.97438 * 12 10 9 14 14 Si 1.86795 * 120.00031 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47377 * 59.99816 * 14 12 10 16 16 H 1.48507 * 109.47276 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.47320 * 299.99734 * 14 12 10 18 18 C 1.46497 * 120.00177 * 0.02562 * 8 6 5 19 19 C 1.52997 * 109.47249 * 89.99868 * 18 8 6 20 20 C 1.47201 * 109.46975 * 180.02562 * 19 18 8 21 21 N 8.28967 * 148.38935 * 340.62184 * 2 1 3 22 22 N 1.31400 * 107.28166 * 179.97438 * 3 2 1 23 23 N 1.28507 * 110.14498 * 359.76362 * 22 3 2 24 24 C 1.31508 * 109.94983 * 0.39398 * 23 22 3 25 25 C 1.47117 * 126.49836 * 179.88343 * 24 23 22 26 26 C 1.36269 * 125.96453 * 344.70601 * 25 24 23 27 27 C 1.40825 * 106.72744 * 179.75249 * 26 25 24 28 28 C 1.34790 * 107.07369 * 0.41075 * 27 26 25 29 29 O 1.34336 * 108.72371 * 359.58390 * 28 27 26 30 30 H 1.09000 * 109.46851 * 270.04334 * 1 2 3 31 31 H 1.09003 * 109.46797 * 30.03919 * 1 2 3 32 32 H 1.08994 * 109.47140 * 150.04366 * 1 2 3 33 33 H 1.09006 * 109.47210 * 299.99957 * 5 4 3 34 34 H 1.08997 * 109.47288 * 59.99834 * 5 4 3 35 35 H 1.08997 * 109.47011 * 210.00000 * 9 8 6 36 36 H 1.08999 * 109.47479 * 330.00189 * 9 8 6 37 37 H 0.97001 * 120.00364 * 180.02562 * 13 12 10 38 38 H 1.09002 * 109.46802 * 209.99989 * 18 8 6 39 39 H 1.09001 * 109.47023 * 329.99451 * 18 8 6 40 40 H 1.09002 * 109.47317 * 299.99805 * 19 18 8 41 41 H 1.08996 * 109.47080 * 60.00120 * 19 18 8 42 42 H 1.08003 * 126.63352 * 0.02562 * 26 25 24 43 43 H 1.07999 * 126.46567 * 180.26066 * 27 26 25 44 44 H 1.08002 * 125.64062 * 179.85529 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2912 1.0888 0.0000 4 16 1.7923 2.7788 -0.0006 5 6 3.4129 3.5849 0.0005 6 6 3.2299 5.0808 0.0008 7 8 2.1136 5.5551 -0.0002 8 7 4.3066 5.8914 0.0022 9 6 4.1286 7.3456 0.0019 10 6 4.0658 7.8442 1.4226 11 1 4.1496 7.1475 2.2436 12 6 3.9013 9.1898 1.6744 13 7 3.7997 10.0381 0.6747 14 14 3.8241 9.8079 3.4354 15 1 5.0870 9.4635 4.1367 16 1 3.6435 11.2819 3.4352 17 1 2.6798 9.1697 4.1344 18 6 5.6549 5.3184 0.0028 19 6 6.1254 5.1199 -1.4394 20 6 7.4799 4.5436 -1.4387 21 7 8.5248 4.0988 -1.4417 22 7 3.5267 0.6414 0.0006 23 7 3.5320 -0.6437 0.0059 24 6 2.2977 -1.0975 0.0006 25 6 1.8845 -2.5094 0.0016 26 6 2.6822 -3.5770 -0.2829 27 6 1.8801 -4.7275 -0.1565 28 6 0.6441 -4.3126 0.1858 29 8 0.6508 -2.9728 0.2839 30 1 -0.3633 0.0008 1.0277 31 1 -0.3633 0.8897 -0.5145 32 1 -0.3633 -0.8903 -0.5131 33 1 3.9664 3.2868 0.8910 34 1 3.9677 3.2865 -0.8889 35 1 4.9685 7.8143 -0.5109 36 1 3.2017 7.5981 -0.5131 37 1 3.6843 10.9848 0.8517 38 1 6.3370 5.9951 0.5176 39 1 5.6408 4.3569 0.5161 40 1 5.4433 4.4432 -1.9543 41 1 6.1395 6.0814 -1.9526 42 1 3.7285 -3.5468 -0.5491 43 1 2.1950 -5.7494 -0.3078 44 1 -0.2093 -4.9518 0.3574 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005862937.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:28 Heat of formation + Delta-G solvation = 98.214897 kcal Electronic energy + Delta-G solvation = -30038.755554 eV Core-core repulsion = 25700.638792 eV Total energy + Delta-G solvation = -4338.116762 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 375.115 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.30383 -42.72264 -39.40015 -36.86905 -35.39653 -35.34003 -33.65882 -32.99264 -32.23029 -30.91730 -30.33110 -28.99479 -27.94169 -26.93073 -24.09793 -23.70068 -23.30524 -22.80642 -21.80512 -20.88291 -19.00892 -18.54124 -17.78922 -17.44375 -17.07035 -16.80665 -16.50470 -16.43297 -16.19789 -15.69162 -15.44259 -15.10885 -14.74016 -14.33736 -14.03454 -13.87975 -13.66156 -13.57968 -13.43419 -13.22571 -13.16239 -12.96524 -12.75545 -12.44767 -12.36084 -12.08931 -12.01145 -11.74828 -11.34786 -11.20728 -11.03506 -10.93487 -10.84299 -10.67180 -10.63710 -10.48935 -10.36505 -10.24925 -9.80025 -9.35085 -8.92720 -8.51225 -8.01252 -7.70539 -6.13392 -4.18392 0.51677 0.77625 1.59747 1.84150 2.01818 2.10257 2.30134 2.70536 2.75016 2.86728 3.04178 3.28627 3.33309 3.36235 3.55078 3.89804 4.11839 4.20999 4.37922 4.48865 4.50297 4.69276 4.75277 4.78222 4.95971 4.98661 4.99457 5.03400 5.14670 5.22337 5.32694 5.33944 5.42401 5.47207 5.52511 5.54994 5.79412 5.94980 6.04687 6.22002 6.50114 6.78155 7.22947 7.31378 7.62157 7.81563 8.05074 8.10367 8.22519 8.61099 8.86326 9.47253 10.94700 Molecular weight = 375.12amu Principal moments of inertia in cm(-1) A = 0.011992 B = 0.002046 C = 0.001834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2334.401068 B =13680.386624 C =15260.580501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.459 5.459 3 C 0.156 3.844 4 S 0.090 5.910 5 C -0.149 4.149 6 C 0.526 3.474 7 O -0.519 6.519 8 N -0.586 5.586 9 C 0.246 3.754 10 C -0.532 4.532 11 H 0.059 0.941 12 C 0.064 3.936 13 N -0.892 5.892 14 Si 0.898 3.102 15 H -0.276 1.276 16 H -0.286 1.286 17 H -0.276 1.276 18 C 0.113 3.887 19 C -0.050 4.050 20 C 0.216 3.784 21 N -0.442 5.442 22 N -0.287 5.287 23 N -0.247 5.247 24 C 0.245 3.755 25 C 0.047 3.953 26 C -0.140 4.140 27 C -0.211 4.211 28 C -0.021 4.021 29 O -0.175 6.175 30 H 0.089 0.911 31 H 0.099 0.901 32 H 0.096 0.904 33 H 0.124 0.876 34 H 0.122 0.878 35 H 0.039 0.961 36 H 0.049 0.951 37 H 0.265 0.735 38 H 0.099 0.901 39 H 0.079 0.921 40 H 0.106 0.894 41 H 0.118 0.882 42 H 0.162 0.838 43 H 0.158 0.842 44 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.661 -25.776 -4.112 27.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.152 5.152 3 C -0.217 4.217 4 S 0.318 5.682 5 C -0.301 4.301 6 C 0.310 3.690 7 O -0.396 6.396 8 N -0.317 5.317 9 C 0.127 3.873 10 C -0.571 4.571 11 H 0.077 0.923 12 C -0.139 4.139 13 N -0.531 5.531 14 Si 0.725 3.275 15 H -0.202 1.202 16 H -0.212 1.212 17 H -0.201 1.201 18 C -0.014 4.014 19 C -0.091 4.091 20 C -0.102 4.102 21 N -0.119 5.119 22 N -0.134 5.134 23 N -0.091 5.091 24 C -0.020 4.020 25 C -0.005 4.005 26 C -0.162 4.162 27 C -0.230 4.230 28 C -0.090 4.090 29 O -0.070 6.070 30 H 0.108 0.892 31 H 0.118 0.882 32 H 0.114 0.886 33 H 0.142 0.858 34 H 0.140 0.860 35 H 0.057 0.943 36 H 0.067 0.933 37 H 0.075 0.925 38 H 0.117 0.883 39 H 0.097 0.903 40 H 0.124 0.876 41 H 0.136 0.864 42 H 0.179 0.821 43 H 0.175 0.825 44 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -6.586 -25.204 -4.078 26.367 hybrid contribution -0.415 -0.260 0.979 1.094 sum -7.001 -25.464 -3.099 26.590 Atomic orbital electron populations 1.22257 0.74149 1.05660 1.04959 1.46393 1.08979 1.04442 1.55419 1.27507 0.90064 0.97507 1.06617 1.86325 1.07721 0.82499 1.91638 1.23987 0.99118 0.97837 1.09117 1.19314 0.85665 0.85880 0.78114 1.90745 1.23420 1.76014 1.49429 1.48127 1.03351 1.09390 1.70826 1.19441 0.98796 0.71128 0.97926 1.21355 1.50996 0.92585 0.92130 0.92290 1.24906 0.94867 0.96666 0.97446 1.69900 1.49212 1.03160 1.30816 0.86565 0.78699 0.77620 0.84606 1.20196 1.21192 1.20134 1.21415 0.85907 1.00570 0.93470 1.19855 0.85249 1.02739 1.01268 1.28993 0.94761 0.93175 0.93277 1.81192 1.12411 1.09857 1.08415 1.74760 1.15403 1.02350 1.20846 1.74379 1.15040 1.03095 1.16581 1.21256 0.87072 0.85268 1.08436 1.18255 0.83957 0.88810 1.09477 1.21889 1.01363 0.90029 1.02929 1.21853 0.93446 1.00337 1.07373 1.24272 1.00488 0.80001 1.04193 1.84069 1.30723 1.22955 1.69245 0.89232 0.88211 0.88577 0.85759 0.86008 0.94289 0.93301 0.92539 0.88284 0.90262 0.87599 0.86354 0.82064 0.82467 0.77245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.53 10.67 59.85 0.64 1.17 16 2 N -0.46 -5.29 3.24 -121.58 -0.39 -5.68 16 3 C 0.16 2.07 8.07 -88.11 -0.71 1.36 16 4 S 0.09 1.19 20.94 -107.50 -2.25 -1.07 16 5 C -0.15 -1.97 4.26 36.01 0.15 -1.81 16 6 C 0.53 9.17 7.69 -10.98 -0.08 9.09 16 7 O -0.52 -11.24 15.44 5.55 0.09 -11.15 16 8 N -0.59 -10.21 2.46 -175.06 -0.43 -10.64 16 9 C 0.25 5.57 5.16 -5.19 -0.03 5.54 16 10 C -0.53 -13.77 9.39 -34.44 -0.32 -14.09 16 11 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 12 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 13 N -0.89 -24.87 13.29 55.43 0.74 -24.14 16 14 Si 0.90 20.88 29.54 -169.99 -5.02 15.86 16 15 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 16 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 17 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 18 C 0.11 1.46 5.17 -4.04 -0.02 1.44 16 19 C -0.05 -0.52 6.03 -29.52 -0.18 -0.70 16 20 C 0.22 2.71 15.43 -20.77 -0.32 2.39 16 21 N -0.44 -6.77 18.53 42.14 0.78 -5.99 16 22 N -0.29 -4.32 11.58 30.73 0.36 -3.96 16 23 N -0.25 -3.68 12.22 32.49 0.40 -3.28 16 24 C 0.25 3.08 7.89 -153.71 -1.21 1.87 16 25 C 0.05 0.48 7.01 -36.69 -0.26 0.22 16 26 C -0.14 -1.23 10.85 -39.31 -0.43 -1.65 16 27 C -0.21 -1.29 10.88 -39.83 -0.43 -1.73 16 28 C -0.02 -0.11 12.08 29.51 0.36 0.25 16 29 O -0.17 -1.44 9.37 4.32 0.04 -1.40 16 30 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.10 0.64 7.86 -51.93 -0.41 0.23 16 32 H 0.10 0.57 7.09 -51.93 -0.37 0.20 16 33 H 0.12 1.55 7.40 -51.91 -0.38 1.16 16 34 H 0.12 1.35 7.19 -51.92 -0.37 0.98 16 35 H 0.04 0.88 8.07 -51.93 -0.42 0.46 16 36 H 0.05 1.26 7.42 -51.93 -0.39 0.88 16 37 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 38 H 0.10 1.36 8.07 -51.93 -0.42 0.94 16 39 H 0.08 0.89 6.44 -51.93 -0.33 0.55 16 40 H 0.11 0.91 7.22 -51.93 -0.38 0.54 16 41 H 0.12 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.16 1.33 8.06 -52.48 -0.42 0.91 16 43 H 0.16 0.57 8.06 -52.49 -0.42 0.15 16 44 H 0.21 0.25 8.06 -52.49 -0.42 -0.17 16 LS Contribution 407.31 15.07 6.14 6.14 Total: -1.00 -35.33 407.31 -7.63 -42.96 By element: Atomic # 1 Polarization: 2.51 SS G_CDS: -5.13 Total: -2.61 kcal Atomic # 6 Polarization: 7.90 SS G_CDS: -2.94 Total: 4.96 kcal Atomic # 7 Polarization: -55.14 SS G_CDS: 1.45 Total: -53.69 kcal Atomic # 8 Polarization: -12.67 SS G_CDS: 0.13 Total: -12.55 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Atomic # 16 Polarization: 1.19 SS G_CDS: -2.25 Total: -1.07 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -35.33 -7.63 -42.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005862937.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.179 kcal (2) G-P(sol) polarization free energy of solvation -35.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds