Wall clock time and date at job start Tue Mar 31 2020 06:15:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38604 * 120.40276 * 2 1 4 4 C 1.38600 * 118.55927 * 180.02562 * 3 2 1 5 5 C 1.50699 * 120.40126 * 179.97438 * 4 3 2 6 6 N 1.32274 * 119.19752 * 359.97438 * 4 3 2 7 7 C 1.32495 * 120.74301 * 0.02562 * 6 4 3 8 8 N 1.38403 * 119.21755 * 179.97438 * 7 6 4 9 9 S 1.65601 * 119.99640 * 164.99822 * 8 7 6 10 10 O 1.42097 * 106.40523 * 311.46104 * 9 8 7 11 11 O 1.42109 * 106.40152 * 178.53972 * 9 8 7 12 12 C 1.76196 * 107.21861 * 65.00340 * 9 8 7 13 13 C 1.38334 * 119.91343 * 269.72181 * 12 9 8 14 14 C 1.38070 * 120.08096 * 180.27349 * 13 12 9 15 15 C 1.39026 * 119.91476 * 0.02562 * 14 13 12 16 16 N 1.39529 * 120.07769 * 179.97438 * 15 14 13 17 17 C 1.34776 * 119.99882 * 213.41156 * 16 15 14 18 18 O 1.21745 * 120.00239 * 5.28158 * 17 16 15 19 19 C 1.46171 * 120.00247 * 185.27809 * 17 16 15 20 20 H 1.08004 * 119.99736 * 0.02562 * 19 17 16 21 21 C 1.40128 * 120.00561 * 180.02562 * 19 17 16 22 22 N 1.30635 * 119.99274 * 0.02562 * 21 19 17 23 23 Si 1.86796 * 120.00236 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47144 * 90.00081 * 23 21 19 25 25 H 1.48503 * 109.46711 * 209.99917 * 23 21 19 26 26 H 1.48501 * 109.46838 * 329.99579 * 23 21 19 27 27 C 1.39024 * 119.83480 * 359.97438 * 15 14 13 28 28 C 1.38054 * 119.91826 * 0.02562 * 27 15 14 29 29 N 1.32279 * 120.40327 * 180.29371 * 2 1 3 30 30 H 1.08996 * 109.47464 * 90.00302 * 1 2 3 31 31 H 1.09005 * 109.47122 * 210.00344 * 1 2 3 32 32 H 1.08998 * 109.47099 * 329.99946 * 1 2 3 33 33 H 1.08004 * 120.71975 * 0.04500 * 3 2 1 34 34 H 1.08997 * 109.47201 * 270.01845 * 5 4 3 35 35 H 1.09003 * 109.47542 * 30.02288 * 5 4 3 36 36 H 1.09004 * 109.47578 * 150.01762 * 5 4 3 37 37 H 0.96998 * 119.99986 * 345.00030 * 8 7 6 38 38 H 1.08000 * 119.95890 * 0.25541 * 13 12 9 39 39 H 1.07997 * 120.03571 * 180.02562 * 14 13 12 40 40 H 0.96997 * 120.00326 * 33.41453 * 16 15 14 41 41 H 0.97003 * 120.00100 * 179.97438 * 22 21 19 42 42 H 1.08000 * 120.03999 * 179.97438 * 27 15 14 43 43 H 1.08008 * 119.96120 * 180.02562 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2084 1.1954 0.0000 4 6 3.5937 1.1509 -0.0005 5 6 4.3977 2.4254 -0.0011 6 7 4.2015 -0.0240 -0.0005 7 6 3.5013 -1.1488 -0.0005 8 7 4.1697 -2.3607 -0.0010 9 16 3.3567 -3.7548 0.3702 10 8 2.6325 -3.4912 1.5640 11 8 4.2980 -4.8125 0.2497 12 6 2.1562 -4.0108 -0.8938 13 6 0.8854 -3.4821 -0.7555 14 6 -0.0598 -3.6853 -1.7413 15 6 0.2669 -4.4229 -2.8736 16 7 -0.6857 -4.6309 -3.8716 17 6 -0.6876 -5.7824 -4.5719 18 8 0.0785 -6.6794 -4.2707 19 6 -1.6096 -5.9545 -5.6930 20 1 -2.2891 -5.1587 -5.9605 21 6 -1.6120 -7.1520 -6.4208 22 7 -0.7906 -8.1147 -6.0970 23 14 -2.7898 -7.3716 -7.8540 24 1 -2.1407 -6.9025 -9.1045 25 1 -3.1435 -8.8076 -7.9884 26 1 -4.0216 -6.5793 -7.6082 27 6 1.5451 -4.9527 -3.0089 28 6 2.4848 -4.7452 -2.0190 29 7 2.1764 -1.1409 -0.0058 30 1 -0.3634 -0.0001 -1.0276 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3633 0.8900 0.5138 33 1 1.6868 2.1412 0.0007 34 1 4.5909 2.7327 -1.0289 35 1 3.8393 3.2077 0.5131 36 1 5.3447 2.2580 0.5121 37 1 5.1144 -2.3934 -0.2188 38 1 0.6321 -2.9098 0.1247 39 1 -1.0516 -3.2718 -1.6328 40 1 -1.3466 -3.9467 -4.0614 41 1 -0.7924 -8.9438 -6.6005 42 1 1.8024 -5.5266 -3.8869 43 1 3.4782 -5.1562 -2.1236 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005925229.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:59 Heat of formation + Delta-G solvation = -31.759992 kcal Electronic energy + Delta-G solvation = -31630.582145 eV Core-core repulsion = 27189.110587 eV Total energy + Delta-G solvation = -4441.471558 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 376.104 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.44423 -39.33575 -37.21874 -37.08425 -36.15507 -35.82109 -35.12062 -33.68796 -32.60979 -31.90602 -30.51319 -29.78225 -29.32698 -27.76392 -26.44825 -23.86438 -22.81450 -22.53408 -22.15092 -20.12951 -19.56467 -18.49434 -18.19964 -17.76997 -17.32018 -16.90336 -16.27777 -15.87954 -15.72557 -15.69181 -15.27153 -14.47859 -14.25350 -14.06289 -14.02217 -13.80280 -13.47909 -13.38237 -13.22482 -13.09912 -12.89792 -12.75369 -12.52748 -12.47981 -12.34519 -12.16104 -12.05158 -11.95505 -11.52069 -11.43058 -11.29981 -11.19440 -10.88475 -10.75607 -10.60001 -10.50933 -10.43957 -9.69736 -9.48739 -9.09182 -9.04589 -8.55241 -7.93045 -7.46661 -6.47418 -4.96258 0.32169 0.72288 0.79866 1.36557 1.90494 2.54556 2.99669 3.06977 3.10490 3.37094 3.62140 3.74034 3.82194 3.88220 4.07456 4.14729 4.37724 4.42350 4.49755 4.77190 4.77937 4.97015 5.12884 5.13344 5.22783 5.26551 5.28758 5.39703 5.43878 5.49075 5.62374 5.70980 5.75017 5.95480 6.08045 6.11726 6.38211 6.43822 6.50383 6.68884 6.86451 6.89351 7.15472 7.23063 7.54758 7.78621 7.83948 7.98694 8.71646 9.00560 10.21326 10.42452 Molecular weight = 376.10amu Principal moments of inertia in cm(-1) A = 0.013701 B = 0.002394 C = 0.002180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2043.166625 B =11693.814182 C =12840.493744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.225 3.775 3 C -0.265 4.265 4 C 0.210 3.790 5 C -0.106 4.106 6 N -0.550 5.550 7 C 0.577 3.423 8 N -1.017 6.017 9 S 2.699 3.301 10 O -0.943 6.943 11 O -0.952 6.952 12 C -0.714 4.714 13 C 0.039 3.961 14 C -0.210 4.210 15 C 0.256 3.744 16 N -0.695 5.695 17 C 0.537 3.463 18 O -0.554 6.554 19 C -0.535 4.535 20 H 0.074 0.926 21 C 0.085 3.915 22 N -0.755 5.755 23 Si 0.916 3.084 24 H -0.270 1.270 25 H -0.277 1.277 26 H -0.263 1.263 27 C -0.158 4.158 28 C -0.002 4.002 29 N -0.554 5.554 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.149 0.851 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.437 0.563 38 H 0.140 0.860 39 H 0.125 0.875 40 H 0.397 0.603 41 H 0.274 0.726 42 H 0.145 0.855 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.249 21.531 10.301 24.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.079 3.921 3 C -0.289 4.289 4 C 0.063 3.937 5 C -0.164 4.164 6 N -0.272 5.272 7 C 0.219 3.781 8 N -0.765 5.765 9 S 2.794 3.206 10 O -0.933 6.933 11 O -0.943 6.943 12 C -0.808 4.808 13 C 0.019 3.981 14 C -0.232 4.232 15 C 0.153 3.847 16 N -0.336 5.336 17 C 0.345 3.655 18 O -0.435 6.435 19 C -0.571 4.571 20 H 0.092 0.908 21 C -0.137 4.137 22 N -0.383 5.383 23 Si 0.740 3.260 24 H -0.195 1.195 25 H -0.202 1.202 26 H -0.187 1.187 27 C -0.180 4.180 28 C -0.023 4.023 29 N -0.276 5.276 30 H 0.110 0.890 31 H 0.107 0.893 32 H 0.103 0.897 33 H 0.167 0.833 34 H 0.105 0.895 35 H 0.101 0.899 36 H 0.102 0.898 37 H 0.275 0.725 38 H 0.158 0.842 39 H 0.143 0.857 40 H 0.231 0.769 41 H 0.085 0.915 42 H 0.163 0.837 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 6.342 19.149 11.149 23.048 hybrid contribution -1.204 1.004 -1.641 2.270 sum 5.139 20.154 9.508 22.869 Atomic orbital electron populations 1.20907 0.87217 1.04557 1.04297 1.21444 0.97323 0.86724 0.86589 1.22375 0.95373 1.00451 1.10675 1.21519 0.91533 0.92995 0.87630 1.20805 1.00233 0.91478 1.03852 1.67775 1.40994 0.97653 1.20793 1.18642 0.85202 0.85699 0.88579 1.53599 1.23052 1.18672 1.81215 1.01742 0.73389 0.71025 0.74458 1.93563 1.72595 1.83717 1.43427 1.93616 1.62585 1.50654 1.87407 1.29753 1.13320 1.19167 1.18540 1.20557 0.90080 0.90679 0.96833 1.20947 1.00208 1.07828 0.94242 1.18339 0.88757 0.90043 0.87516 1.44481 1.31873 1.21291 1.36004 1.18485 0.85230 0.79201 0.82626 1.90671 1.43366 1.40306 1.69166 1.20856 1.21154 1.01903 1.13153 0.90827 1.25772 0.95218 0.94951 0.97770 1.69973 1.29750 1.03848 1.34689 0.86233 0.80654 0.78264 0.80898 1.19494 1.20177 1.18713 1.21373 0.91583 1.03529 1.01491 1.20667 0.99237 0.91731 0.90675 1.67747 1.06585 1.32020 1.21290 0.88990 0.89295 0.89728 0.83306 0.89451 0.89859 0.89846 0.72508 0.84212 0.85741 0.76945 0.91487 0.83698 0.85165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.77 10.22 36.00 0.37 -0.40 16 2 C 0.23 2.25 6.82 -82.27 -0.56 1.68 16 3 C -0.26 -2.13 9.53 -39.31 -0.37 -2.51 16 4 C 0.21 1.92 6.82 -82.27 -0.56 1.35 16 5 C -0.11 -0.55 10.22 36.01 0.37 -0.19 16 6 N -0.55 -6.52 10.40 -10.16 -0.11 -6.63 16 7 C 0.58 7.60 8.18 -322.82 -2.64 4.96 16 8 N -1.02 -12.70 5.85 29.76 0.17 -12.53 16 9 S 2.70 40.88 5.39 -107.50 -0.58 40.30 16 10 O -0.94 -16.06 16.55 -57.17 -0.95 -17.01 16 11 O -0.95 -16.11 17.28 -57.17 -0.99 -17.09 16 12 C -0.71 -11.90 5.61 -39.51 -0.22 -12.12 16 13 C 0.04 0.62 7.94 -39.61 -0.31 0.31 16 14 C -0.21 -3.48 9.97 -39.35 -0.39 -3.87 16 15 C 0.26 5.15 6.27 -83.77 -0.53 4.62 16 16 N -0.70 -14.78 5.32 -11.20 -0.06 -14.84 16 17 C 0.54 14.31 7.47 -13.08 -0.10 14.21 16 18 O -0.55 -16.79 12.70 5.15 0.07 -16.73 16 19 C -0.54 -14.02 9.54 -35.69 -0.34 -14.36 16 20 H 0.07 1.73 7.85 -52.48 -0.41 1.32 16 21 C 0.08 2.22 5.50 -17.35 -0.10 2.12 16 22 N -0.75 -21.36 11.82 55.55 0.66 -20.70 16 23 Si 0.92 18.87 29.56 -169.99 -5.02 13.85 16 24 H -0.27 -5.45 7.11 56.52 0.40 -5.04 16 25 H -0.28 -5.63 7.11 56.52 0.40 -5.22 16 26 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 27 C -0.16 -3.31 8.65 -39.36 -0.34 -3.65 16 28 C 0.00 -0.04 9.51 -39.61 -0.38 -0.42 16 29 N -0.55 -7.13 6.03 -10.16 -0.06 -7.19 16 30 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.09 0.67 7.71 -51.93 -0.40 0.27 16 32 H 0.08 0.36 8.09 -51.93 -0.42 -0.06 16 33 H 0.15 0.68 8.06 -52.48 -0.42 0.26 16 34 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 35 H 0.08 0.25 8.10 -51.93 -0.42 -0.17 16 36 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.44 4.28 8.95 -34.47 -0.31 3.97 16 38 H 0.14 1.99 6.17 -52.49 -0.32 1.67 16 39 H 0.12 1.70 8.06 -52.49 -0.42 1.27 16 40 H 0.40 7.01 8.79 -40.82 -0.36 6.65 16 41 H 0.27 7.02 8.29 -40.82 -0.34 6.69 16 42 H 0.15 3.42 6.42 -52.49 -0.34 3.09 16 43 H 0.13 2.11 7.61 -52.48 -0.40 1.71 16 LS Contribution 383.00 15.07 5.77 5.77 Total: -1.00 -37.53 383.00 -11.83 -49.36 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: -4.63 Total: 11.69 kcal Atomic # 6 Polarization: -2.15 SS G_CDS: -6.11 Total: -8.25 kcal Atomic # 7 Polarization: -62.49 SS G_CDS: 0.60 Total: -61.89 kcal Atomic # 8 Polarization: -48.96 SS G_CDS: -1.87 Total: -50.83 kcal Atomic # 14 Polarization: 18.87 SS G_CDS: -5.02 Total: 13.85 kcal Atomic # 16 Polarization: 40.88 SS G_CDS: -0.58 Total: 40.30 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -37.53 -11.83 -49.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005925229.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.602 kcal (2) G-P(sol) polarization free energy of solvation -37.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds