Wall clock time and date at job start Tue Mar 31 2020 05:53:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99449 * 2 1 4 4 H 1.48501 * 109.47189 * 269.99589 * 3 2 1 5 5 H 1.48502 * 109.47395 * 30.00009 * 3 2 1 6 6 H 1.48503 * 109.46888 * 150.00282 * 3 2 1 7 7 C 1.37870 * 120.00444 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99911 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00335 * 180.02562 * 7 2 1 10 10 N 1.46498 * 109.47351 * 179.97438 * 9 7 2 11 11 C 1.34257 * 125.14681 * 125.28491 * 10 9 7 12 12 C 1.38259 * 107.82868 * 180.10562 * 11 10 9 13 13 C 1.46738 * 126.83814 * 179.89358 * 12 11 10 14 14 C 1.35256 * 119.99880 * 359.68391 * 13 12 11 15 15 C 1.41539 * 119.99935 * 179.72107 * 14 13 12 16 16 O 1.21673 * 119.99975 * 0.28379 * 15 14 13 17 17 O 1.34952 * 119.99928 * 180.27555 * 15 14 13 18 18 C 1.46740 * 106.32496 * 359.63465 * 12 11 10 19 19 C 1.48254 * 126.50726 * 180.20417 * 18 12 11 20 20 C 1.39428 * 120.11825 * 145.00036 * 19 18 12 21 21 C 1.37987 * 119.88870 * 179.97438 * 20 19 18 22 22 C 1.38335 * 120.13767 * 0.02562 * 21 20 19 23 23 C 1.38402 * 120.24734 * 359.97438 * 22 21 20 24 24 Br 1.89101 * 119.94607 * 180.02562 * 23 22 21 25 25 C 1.38115 * 120.10677 * 359.75628 * 23 22 21 26 26 N 1.31365 * 106.98003 * 0.22138 * 18 12 11 27 27 H 0.96993 * 120.00414 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.47170 * 59.99273 * 9 7 2 29 29 H 1.09008 * 109.46712 * 299.99574 * 9 7 2 30 30 H 1.07998 * 126.08624 * 0.02562 * 11 10 9 31 31 H 1.08001 * 120.00334 * 179.69203 * 13 12 11 32 32 H 1.08002 * 120.00316 * 0.02562 * 14 13 12 33 33 H 0.96701 * 113.99780 * 180.02562 * 17 15 14 34 34 H 1.07998 * 120.05668 * 0.02562 * 20 19 18 35 35 H 1.08002 * 119.92915 * 180.02562 * 21 20 19 36 36 H 1.07997 * 119.87747 * 179.97438 * 22 21 20 37 37 H 1.07998 * 120.06708 * 180.25616 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1939 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1939 0.0000 10 7 4.0000 -2.5751 -0.0001 11 6 4.8559 -3.0921 -0.8960 12 6 5.0698 -4.4165 -0.5616 13 6 5.9322 -5.3732 -1.2647 14 6 6.6140 -4.9859 -2.3668 15 6 7.4504 -5.9069 -3.0415 16 8 7.5522 -7.0486 -2.6331 17 8 8.1350 -5.5190 -4.1379 18 6 4.2676 -4.6733 0.6399 19 6 4.1716 -5.9549 1.3791 20 6 4.0358 -5.9538 2.7667 21 6 3.9463 -7.1493 3.4498 22 6 3.9917 -8.3480 2.7608 23 6 4.1264 -8.3558 1.3834 24 35 4.1867 -9.9993 0.4501 25 6 4.2112 -7.1650 0.6889 26 7 3.6504 -3.5522 0.9360 27 1 -0.4850 0.8400 0.0004 28 1 3.8746 -0.6806 0.8904 29 1 3.8752 -0.6795 -0.8896 30 1 5.2975 -2.5673 -1.7302 31 1 6.0225 -6.3865 -0.9023 32 1 6.5240 -3.9724 -2.7291 33 1 8.6783 -6.2165 -4.5296 34 1 3.9998 -5.0187 3.3059 35 1 3.8407 -7.1492 4.5247 36 1 3.9217 -9.2813 3.2998 37 1 4.3121 -7.1717 -0.3863 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005972800.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:58 Heat of formation + Delta-G solvation = 22.789992 kcal Electronic energy + Delta-G solvation = -24223.216546 eV Core-core repulsion = 20399.513214 eV Total energy + Delta-G solvation = -3823.703331 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 376.021 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.82213 -40.06715 -39.08048 -36.11444 -34.54934 -33.57727 -32.80912 -32.12013 -30.84876 -29.59075 -29.05519 -27.67206 -24.73776 -23.90666 -22.64779 -21.89176 -20.99296 -19.73254 -18.86251 -18.13933 -17.28635 -16.96050 -16.69076 -15.92060 -15.49402 -15.36879 -15.19528 -14.74138 -14.34046 -13.86265 -13.78476 -13.51632 -13.49208 -13.36621 -12.88739 -12.67937 -12.41631 -11.97857 -11.57889 -11.43420 -11.30011 -11.26591 -11.01016 -10.91060 -10.65798 -10.57895 -10.38625 -10.29425 -10.20562 -9.88576 -9.44758 -8.92264 -8.88397 -8.52866 -7.67217 -6.38702 -4.44003 0.66043 0.99570 1.09873 1.50358 2.35801 2.74660 2.87498 3.04513 3.09239 3.15972 3.39069 3.43984 3.69476 4.08359 4.34926 4.64292 4.75280 4.87277 4.93053 5.09910 5.17231 5.23618 5.24969 5.34289 5.54504 5.58508 5.69241 5.75869 5.99401 6.09511 6.18521 6.29107 6.32244 6.41685 6.45522 6.49175 6.62642 6.75189 7.07303 7.27992 7.96597 7.99166 8.14663 8.68426 9.13897 10.73485 Molecular weight = 376.02amu Principal moments of inertia in cm(-1) A = 0.008395 B = 0.002971 C = 0.002336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3334.578769 B = 9422.575201 C =11981.367399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.081 3.919 3 Si 0.872 3.128 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.264 1.264 7 C -0.543 4.543 8 H 0.087 0.913 9 C 0.223 3.777 10 N -0.308 5.308 11 C 0.105 3.895 12 C -0.262 4.262 13 C 0.090 3.910 14 C -0.273 4.273 15 C 0.519 3.481 16 O -0.538 6.538 17 O -0.512 6.512 18 C 0.112 3.888 19 C 0.007 3.993 20 C -0.075 4.075 21 C -0.113 4.113 22 C -0.089 4.089 23 C -0.089 4.089 24 Br -0.051 7.051 25 C -0.072 4.072 26 N -0.245 5.245 27 H 0.271 0.729 28 H 0.049 0.951 29 H 0.053 0.947 30 H 0.183 0.817 31 H 0.134 0.866 32 H 0.132 0.868 33 H 0.403 0.597 34 H 0.137 0.863 35 H 0.135 0.865 36 H 0.133 0.867 37 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.706 -15.443 0.842 20.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.124 4.124 3 Si 0.698 3.302 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.189 1.189 7 C -0.581 4.581 8 H 0.105 0.895 9 C 0.105 3.895 10 N -0.083 5.083 11 C -0.047 4.047 12 C -0.274 4.274 13 C 0.070 3.930 14 C -0.293 4.293 15 C 0.369 3.631 16 O -0.431 6.431 17 O -0.322 6.322 18 C -0.056 4.056 19 C 0.004 3.996 20 C -0.094 4.094 21 C -0.132 4.132 22 C -0.109 4.109 23 C -0.169 4.169 24 Br 0.034 6.966 25 C -0.093 4.093 26 N -0.064 5.064 27 H 0.081 0.919 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.200 0.800 31 H 0.152 0.848 32 H 0.150 0.850 33 H 0.259 0.741 34 H 0.154 0.846 35 H 0.153 0.847 36 H 0.151 0.849 37 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 11.416 -15.055 1.587 18.960 hybrid contribution 1.096 0.698 -0.780 1.515 sum 12.511 -14.357 0.807 19.060 Atomic orbital electron populations 1.69854 1.06175 1.27590 1.48090 1.24804 0.94871 0.98797 0.93964 0.86927 0.80400 0.83835 0.79065 1.19545 1.20310 1.18872 1.21001 0.87239 0.95954 1.53918 0.89469 1.20291 0.98086 0.72242 0.98895 1.48865 1.29995 1.11488 1.17904 1.23149 0.92750 0.93833 0.95012 1.19989 1.11218 0.94095 1.02123 1.21770 0.85271 0.97150 0.88849 1.20755 1.06240 1.01047 1.01287 1.19603 0.78263 0.86974 0.78301 1.90932 1.64412 1.21385 1.66356 1.85094 1.58675 1.46100 1.42328 1.21773 0.96711 0.92623 0.94448 1.17662 1.00683 0.88907 0.92385 1.21451 0.95853 0.99084 0.93031 1.21101 1.00320 0.91440 1.00363 1.21168 0.98574 0.99151 0.92021 1.21602 1.08809 0.91551 0.94903 1.96721 1.97685 1.26094 1.76092 1.21176 0.97808 0.89812 1.00496 1.77481 1.19793 0.96134 1.13027 0.91910 0.93285 0.92897 0.80018 0.84820 0.84966 0.74130 0.84550 0.84694 0.84938 0.84448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.20 13.96 55.43 0.77 -24.43 16 2 C 0.08 2.13 5.47 -17.82 -0.10 2.04 16 3 Si 0.87 18.83 27.47 -169.99 -4.67 14.16 16 4 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 5 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 6 H -0.26 -5.33 6.54 56.52 0.37 -4.96 16 7 C -0.54 -14.23 9.76 -34.44 -0.34 -14.57 16 8 H 0.09 2.62 8.06 -52.48 -0.42 2.19 16 9 C 0.22 4.71 5.28 -5.20 -0.03 4.68 16 10 N -0.31 -6.02 3.62 -61.93 -0.22 -6.25 16 11 C 0.11 1.66 10.79 -16.48 -0.18 1.48 16 12 C -0.26 -4.08 6.23 -103.02 -0.64 -4.72 16 13 C 0.09 1.22 8.76 -37.21 -0.33 0.90 16 14 C -0.27 -3.46 9.47 -39.39 -0.37 -3.83 16 15 C 0.52 6.75 8.05 31.99 0.26 7.01 16 16 O -0.54 -8.34 16.84 -19.40 -0.33 -8.66 16 17 O -0.51 -5.29 13.54 -41.18 -0.56 -5.84 16 18 C 0.11 1.92 6.94 -80.52 -0.56 1.36 16 19 C 0.01 0.10 5.84 -104.92 -0.61 -0.52 16 20 C -0.07 -0.97 9.76 -39.23 -0.38 -1.36 16 21 C -0.11 -1.19 10.03 -39.64 -0.40 -1.59 16 22 C -0.09 -0.94 9.78 -39.49 -0.39 -1.32 16 23 C -0.09 -1.08 6.22 -39.57 -0.25 -1.33 16 24 Br -0.05 -0.58 33.69 -68.01 -2.29 -2.87 16 25 C -0.07 -0.97 8.42 -39.21 -0.33 -1.30 16 26 N -0.24 -4.95 12.27 34.60 0.42 -4.53 16 27 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 28 H 0.05 1.03 7.20 -51.93 -0.37 0.66 16 29 H 0.05 0.99 7.47 -51.92 -0.39 0.61 16 30 H 0.18 2.15 7.30 -52.49 -0.38 1.76 16 31 H 0.13 1.82 5.62 -52.49 -0.29 1.52 16 32 H 0.13 1.47 6.94 -52.49 -0.36 1.10 16 33 H 0.40 2.40 8.98 45.56 0.41 2.80 16 34 H 0.14 1.76 8.06 -52.49 -0.42 1.34 16 35 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 36 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 37 H 0.14 1.83 6.41 -52.49 -0.34 1.49 16 LS Contribution 353.38 15.07 5.33 5.33 Total: -1.00 -31.66 353.38 -8.77 -40.43 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -2.59 Total: 5.73 kcal Atomic # 6 Polarization: -8.43 SS G_CDS: -4.64 Total: -13.06 kcal Atomic # 7 Polarization: -36.18 SS G_CDS: 0.97 Total: -35.20 kcal Atomic # 8 Polarization: -13.62 SS G_CDS: -0.88 Total: -14.51 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -4.67 Total: 14.16 kcal Atomic # 35 Polarization: -0.58 SS G_CDS: -2.29 Total: -2.87 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.66 -8.77 -40.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005972800.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.224 kcal (2) G-P(sol) polarization free energy of solvation -31.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.434 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds