Wall clock time and date at job start Tue Mar 31 2020 06:45:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46498 * 120.00313 * 2 1 4 4 C 1.39715 * 119.99591 * 179.97438 * 2 1 3 5 5 C 1.39031 * 119.99838 * 180.02562 * 4 2 1 6 6 C 1.38209 * 120.22184 * 180.02562 * 5 4 2 7 7 C 1.38022 * 120.23451 * 359.70715 * 6 5 4 8 8 C 1.39607 * 119.99384 * 0.55248 * 7 6 5 9 9 C 1.47802 * 120.10952 * 179.74921 * 8 7 6 10 10 O 1.21606 * 120.00133 * 179.72271 * 9 8 7 11 11 N 1.34777 * 120.00095 * 359.71636 * 9 8 7 12 12 N 1.40101 * 120.00128 * 179.97438 * 11 9 8 13 13 C 1.30074 * 119.99602 * 180.02562 * 12 11 9 14 14 C 1.46931 * 119.99671 * 180.02562 * 13 12 11 15 15 C 1.36284 * 126.70288 * 179.97438 * 14 13 12 16 16 N 1.36258 * 109.69943 * 180.02562 * 15 14 13 17 17 C 1.37071 * 124.86960 * 180.26446 * 16 15 14 18 18 H 1.08002 * 119.99376 * 158.25677 * 17 16 15 19 19 C 1.38802 * 120.00378 * 338.25864 * 17 16 15 20 20 N 1.31459 * 120.00082 * 349.00325 * 19 17 16 21 21 Si 1.86797 * 120.00279 * 169.00053 * 19 17 16 22 22 H 1.48505 * 109.47043 * 89.99875 * 21 19 17 23 23 H 1.48503 * 109.47687 * 210.00185 * 21 19 17 24 24 H 1.48508 * 109.46987 * 330.00139 * 21 19 17 25 25 C 1.38329 * 110.25031 * 0.02562 * 16 15 14 26 26 C 1.38992 * 133.15319 * 179.97438 * 25 16 15 27 27 C 1.37926 * 119.93411 * 179.97438 * 26 25 16 28 28 C 1.38671 * 120.60763 * 0.04010 * 27 26 25 29 29 C 1.37902 * 120.29031 * 359.97438 * 28 27 26 30 30 C 1.39192 * 119.67997 * 0.02562 * 29 28 27 31 31 C 1.38626 * 120.00244 * 0.02562 * 4 2 1 32 32 H 1.09002 * 109.46942 * 270.00190 * 1 2 3 33 33 H 1.09003 * 109.46836 * 29.99857 * 1 2 3 34 34 H 1.08998 * 109.47508 * 150.00015 * 1 2 3 35 35 H 1.09001 * 109.47236 * 269.99888 * 3 2 1 36 36 H 1.09000 * 109.46958 * 29.99650 * 3 2 1 37 37 H 1.08999 * 109.46890 * 149.99748 * 3 2 1 38 38 H 1.07994 * 119.88766 * 359.97438 * 5 4 2 39 39 H 1.07998 * 119.88553 * 179.97438 * 6 5 4 40 40 H 1.07992 * 120.00490 * 180.27556 * 7 6 5 41 41 H 0.97003 * 119.99631 * 0.02562 * 11 9 8 42 42 H 1.08002 * 120.00535 * 0.02562 * 13 12 11 43 43 H 1.07998 * 125.15278 * 0.02696 * 15 14 13 44 44 H 0.97003 * 120.00055 * 180.02562 * 20 19 17 45 45 H 1.08005 * 120.03118 * 0.02956 * 26 25 16 46 46 H 1.07997 * 119.69517 * 180.02562 * 27 26 25 47 47 H 1.07994 * 119.85271 * 179.97438 * 28 27 26 48 48 H 1.08005 * 120.15833 * 179.97438 * 29 28 27 49 49 H 1.07998 * 120.11902 * 0.03961 * 31 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.1635 -1.2100 0.0005 5 6 3.5538 -1.2101 0.0011 6 6 4.2494 -2.4044 0.0011 7 6 3.5688 -3.6051 0.0066 8 6 2.1728 -3.6160 0.0006 9 6 1.4414 -4.9004 0.0010 10 8 0.2254 -4.9076 0.0008 11 7 2.1222 -6.0636 0.0013 12 7 1.4289 -7.2810 0.0022 13 6 2.0860 -8.4036 0.0030 14 6 1.3589 -9.6804 0.0033 15 6 1.9054 -10.9289 0.0037 16 7 0.9143 -11.8640 0.0034 17 6 1.1162 -13.2198 0.0088 18 1 0.3350 -13.8805 0.3548 19 6 2.3243 -13.7434 -0.4303 20 7 3.1893 -12.9710 -1.0495 21 14 2.7212 -15.5457 -0.1415 22 1 2.2386 -16.3496 -1.2931 23 1 4.1902 -15.7130 -0.0020 24 1 2.0504 -16.0075 1.1004 25 6 -0.3246 -11.2487 0.0022 26 6 -1.6270 -11.7340 0.0010 27 6 -2.6893 -10.8542 0.0005 28 6 -2.4718 -9.4847 0.0004 29 6 -1.1867 -8.9845 0.0013 30 6 -0.1058 -9.8614 0.0018 31 6 1.4703 -2.4105 0.0005 32 1 -0.3633 0.0000 1.0277 33 1 -0.3633 0.8900 -0.5138 34 1 -0.3634 -0.8899 -0.5138 35 1 2.3793 1.5833 -1.0277 36 1 1.6085 2.0283 0.5138 37 1 3.1499 1.1383 0.5139 38 1 4.0920 -0.2738 0.0007 39 1 5.3294 -2.3981 0.0011 40 1 4.1161 -4.5360 0.0111 41 1 3.0922 -6.0578 0.0017 42 1 3.1660 -8.3972 0.0034 43 1 2.9636 -11.1445 0.0042 44 1 4.0334 -13.3370 -1.3566 45 1 -1.8071 -12.7989 0.0013 46 1 -3.6997 -11.2355 0.0000 47 1 -3.3125 -8.8068 -0.0004 48 1 -1.0197 -7.9174 0.0008 49 1 0.3903 -2.4128 -0.0005 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006226693.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:45 Heat of formation + Delta-G solvation = 108.893617 kcal Electronic energy + Delta-G solvation = -31823.639122 eV Core-core repulsion = 27524.489000 eV Total energy + Delta-G solvation = -4299.150122 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 376.164 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -40.23558 -40.15391 -38.71258 -36.31428 -36.17067 -35.86025 -33.45275 -32.31571 -31.42530 -30.62181 -29.74835 -28.73498 -28.50851 -27.84268 -25.36952 -25.06930 -23.77358 -21.98514 -21.61358 -21.58679 -20.54852 -19.98138 -19.07373 -17.99538 -17.70790 -16.63409 -16.37075 -15.93597 -15.74446 -15.49828 -15.42016 -14.92227 -14.73585 -14.70734 -14.38732 -14.27166 -13.93512 -13.80033 -13.61274 -13.12566 -12.96964 -12.90244 -12.73022 -12.59994 -12.38205 -12.31368 -11.95781 -11.82495 -11.75865 -11.52217 -11.36930 -11.23283 -11.11593 -10.74692 -10.69240 -10.43616 -10.14889 -10.03878 -9.76362 -9.49493 -9.25489 -9.12850 -8.96541 -8.08097 -7.58837 -7.21469 -6.98978 -6.52814 -4.45824 0.78456 1.34088 1.96008 2.39560 2.72215 2.73371 2.95669 2.96223 3.00588 3.01679 3.19792 3.70158 3.88392 4.15432 4.50875 4.61344 4.64187 4.69243 4.74163 4.86635 4.91868 5.02276 5.03278 5.03942 5.21178 5.29015 5.34936 5.36592 5.42816 5.46088 5.62855 5.69960 5.84459 5.95149 5.96371 6.06329 6.20335 6.26731 6.37682 6.43073 6.50866 6.58466 6.79447 6.90971 6.93237 6.99941 7.04864 7.11348 7.16246 7.41442 7.49606 7.54004 7.62947 7.90496 8.03654 8.07932 8.29959 8.79427 8.94701 9.21066 10.10815 Molecular weight = 376.16amu Principal moments of inertia in cm(-1) A = 0.014662 B = 0.001735 C = 0.001557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1909.266902 B =16134.209819 C =17977.337630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.639 5.639 3 C 0.094 3.906 4 C 0.206 3.794 5 C -0.178 4.178 6 C -0.078 4.078 7 C -0.147 4.147 8 C -0.076 4.076 9 C 0.570 3.430 10 O -0.511 6.511 11 N -0.580 5.580 12 N -0.286 5.286 13 C 0.192 3.808 14 C -0.243 4.243 15 C 0.132 3.868 16 N -0.274 5.274 17 C -0.339 4.339 18 H 0.110 0.890 19 C 0.043 3.957 20 N -0.848 5.848 21 Si 0.942 3.058 22 H -0.270 1.270 23 H -0.275 1.275 24 H -0.263 1.263 25 C 0.046 3.954 26 C -0.108 4.108 27 C -0.137 4.137 28 C -0.162 4.162 29 C -0.075 4.075 30 C -0.068 4.068 31 C -0.137 4.137 32 H 0.050 0.950 33 H 0.066 0.934 34 H 0.073 0.927 35 H 0.048 0.952 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.125 0.875 39 H 0.127 0.873 40 H 0.122 0.878 41 H 0.373 0.627 42 H 0.103 0.897 43 H 0.179 0.821 44 H 0.283 0.717 45 H 0.108 0.892 46 H 0.108 0.892 47 H 0.106 0.894 48 H 0.124 0.876 49 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.088 20.021 1.854 20.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.351 5.351 3 C -0.049 4.049 4 C 0.104 3.896 5 C -0.201 4.201 6 C -0.096 4.096 7 C -0.168 4.168 8 C -0.081 4.081 9 C 0.357 3.643 10 O -0.386 6.386 11 N -0.320 5.320 12 N -0.093 5.093 13 C -0.013 4.013 14 C -0.254 4.254 15 C -0.013 4.013 16 N 0.065 4.935 17 C -0.466 4.466 18 H 0.128 0.872 19 C -0.166 4.166 20 N -0.480 5.480 21 Si 0.766 3.234 22 H -0.196 1.196 23 H -0.200 1.200 24 H -0.187 1.187 25 C -0.061 4.061 26 C -0.128 4.128 27 C -0.157 4.157 28 C -0.181 4.181 29 C -0.094 4.094 30 C -0.073 4.073 31 C -0.160 4.160 32 H 0.068 0.932 33 H 0.085 0.915 34 H 0.091 0.909 35 H 0.066 0.934 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.143 0.857 39 H 0.145 0.855 40 H 0.140 0.860 41 H 0.211 0.789 42 H 0.120 0.880 43 H 0.195 0.805 44 H 0.094 0.906 45 H 0.126 0.874 46 H 0.126 0.874 47 H 0.124 0.876 48 H 0.142 0.858 49 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 2.525 20.376 1.744 20.606 hybrid contribution 1.792 -1.066 -0.087 2.087 sum 4.317 19.310 1.657 19.856 Atomic orbital electron populations 1.21691 0.79177 1.02963 1.01478 1.46303 1.05156 1.02905 1.80783 1.21624 0.97216 0.84897 1.01133 1.17688 0.91167 0.85640 0.95058 1.20830 0.91967 0.98840 1.08425 1.20803 0.99697 0.91481 0.97665 1.21093 0.92836 0.98461 1.04412 1.19655 0.93473 0.92578 1.02384 1.17892 0.87208 0.82056 0.77130 1.90763 1.13205 1.87006 1.47588 1.46817 1.07783 1.04163 1.73251 1.75396 1.22147 0.90136 1.21612 1.23568 0.95809 0.90238 0.91660 1.17910 0.90745 0.89458 1.27293 1.22189 0.95165 0.85340 0.98606 1.40048 1.02456 1.05386 1.45583 1.19900 1.02591 0.80061 1.44094 0.87239 1.25527 0.95687 1.01732 0.93649 1.69854 1.09162 1.37385 1.31564 0.85675 0.78335 0.79841 0.79544 1.19575 1.19971 1.18721 1.18466 0.87236 0.91774 1.08604 1.19902 0.89671 0.98724 1.04486 1.20499 0.96999 0.93212 1.04957 1.20682 0.96172 0.94783 1.06505 1.20575 0.90809 0.99290 0.98723 1.18796 0.92405 0.91582 1.04529 1.20746 1.00620 0.89446 1.05152 0.93153 0.91484 0.90852 0.93384 0.91519 0.91323 0.85710 0.85475 0.85992 0.78866 0.88005 0.80456 0.90650 0.87385 0.87389 0.87568 0.85794 0.84448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.66 10.19 59.85 0.61 1.27 16 2 N -0.64 -5.49 3.41 -187.59 -0.64 -6.13 16 3 C 0.09 0.53 10.19 59.85 0.61 1.14 16 4 C 0.21 2.17 6.55 -83.83 -0.55 1.62 16 5 C -0.18 -1.61 9.20 -39.30 -0.36 -1.97 16 6 C -0.08 -0.69 10.02 -39.67 -0.40 -1.09 16 7 C -0.15 -1.57 9.54 -39.15 -0.37 -1.95 16 8 C -0.08 -1.03 5.87 -105.00 -0.62 -1.65 16 9 C 0.57 9.90 7.89 -12.35 -0.10 9.80 16 10 O -0.51 -10.85 16.68 5.27 0.09 -10.76 16 11 N -0.58 -9.67 6.22 30.53 0.19 -9.48 16 12 N -0.29 -5.79 9.81 32.08 0.31 -5.47 16 13 C 0.19 3.72 10.98 -14.78 -0.16 3.56 16 14 C -0.24 -5.51 6.27 -103.27 -0.65 -6.15 16 15 C 0.13 3.11 9.85 -16.29 -0.16 2.95 16 16 N -0.27 -6.81 2.89 -59.47 -0.17 -6.98 16 17 C -0.34 -8.27 9.89 -15.00 -0.15 -8.42 16 18 H 0.11 2.55 7.85 -52.49 -0.41 2.14 16 19 C 0.04 1.00 5.34 -17.50 -0.09 0.91 16 20 N -0.85 -20.20 10.86 55.49 0.60 -19.59 16 21 Si 0.94 17.77 29.56 -169.99 -5.03 12.74 16 22 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 23 H -0.27 -5.09 7.11 56.52 0.40 -4.69 16 24 H -0.26 -4.90 7.11 56.52 0.40 -4.49 16 25 C 0.05 1.12 6.73 -83.82 -0.56 0.56 16 26 C -0.11 -2.33 9.93 -39.42 -0.39 -2.72 16 27 C -0.14 -2.67 10.02 -39.54 -0.40 -3.06 16 28 C -0.16 -3.26 10.03 -39.54 -0.40 -3.65 16 29 C -0.08 -1.69 9.81 -39.35 -0.39 -2.08 16 30 C -0.07 -1.62 6.25 -104.90 -0.66 -2.27 16 31 C -0.14 -1.74 8.75 -38.96 -0.34 -2.08 16 32 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.07 0.36 8.07 -51.93 -0.42 -0.06 16 34 H 0.07 0.61 6.19 -51.93 -0.32 0.28 16 35 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 36 H 0.07 0.28 8.07 -51.93 -0.42 -0.14 16 37 H 0.07 0.33 6.19 -51.93 -0.32 0.01 16 38 H 0.13 0.84 6.12 -52.49 -0.32 0.52 16 39 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 40 H 0.12 1.07 6.40 -52.49 -0.34 0.73 16 41 H 0.37 4.78 6.68 -182.59 -1.22 3.56 16 42 H 0.10 1.59 8.03 -52.49 -0.42 1.17 16 43 H 0.18 4.05 6.35 -52.49 -0.33 3.72 16 44 H 0.28 6.21 8.31 -40.82 -0.34 5.87 16 45 H 0.11 2.15 8.06 -52.48 -0.42 1.73 16 46 H 0.11 1.75 8.06 -52.49 -0.42 1.32 16 47 H 0.11 1.85 8.06 -52.49 -0.42 1.43 16 48 H 0.12 2.86 7.23 -52.48 -0.38 2.48 16 49 H 0.14 1.82 5.73 -52.49 -0.30 1.52 16 LS Contribution 413.82 15.07 6.24 6.24 Total: -1.00 -31.42 413.82 -10.80 -42.22 By element: Atomic # 1 Polarization: 19.39 SS G_CDS: -6.88 Total: 12.51 kcal Atomic # 6 Polarization: -9.77 SS G_CDS: -5.52 Total: -15.29 kcal Atomic # 7 Polarization: -47.95 SS G_CDS: 0.30 Total: -47.66 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: 0.09 Total: -10.76 kcal Atomic # 14 Polarization: 17.77 SS G_CDS: -5.03 Total: 12.74 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -31.42 -10.80 -42.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006226693.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.114 kcal (2) G-P(sol) polarization free energy of solvation -31.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds