Wall clock time and date at job start Tue Mar 31 2020 05:13:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35953 * 116.99748 * 2 1 4 4 C 1.38177 * 120.00793 * 359.71921 * 3 2 1 5 5 C 1.39784 * 119.85368 * 179.79889 * 4 3 2 6 6 C 1.47317 * 120.07065 * 180.21235 * 5 4 3 7 7 N 1.29911 * 120.00104 * 180.27548 * 6 5 4 8 8 N 1.40104 * 120.00146 * 179.97438 * 7 6 5 9 9 C 1.38483 * 120.00512 * 179.97438 * 8 7 6 10 10 N 1.29755 * 124.95463 * 179.72357 * 9 8 7 11 11 C 1.31988 * 116.88809 * 179.81466 * 10 9 8 12 12 C 1.50697 * 122.71140 * 180.19913 * 11 10 9 13 13 C 1.53001 * 109.47448 * 255.29442 * 12 11 10 14 14 C 1.53003 * 109.47150 * 15.29500 * 12 11 10 15 15 C 1.53001 * 109.46797 * 135.29110 * 12 11 10 16 16 C 1.33441 * 114.57662 * 0.47351 * 11 10 9 17 17 S 1.70971 * 124.94455 * 0.02892 * 9 8 7 18 18 C 1.39858 * 119.86617 * 0.48338 * 5 4 3 19 19 C 1.37760 * 120.00527 * 359.76965 * 18 5 4 20 20 C 1.38966 * 120.15550 * 359.97438 * 19 18 5 21 21 O 1.35694 * 119.93741 * 180.02562 * 20 19 18 22 22 C 1.34799 * 116.99942 * 354.38159 * 21 20 19 23 23 H 1.08004 * 119.99889 * 5.06760 * 22 21 20 24 24 C 1.38578 * 119.99993 * 185.06699 * 22 21 20 25 25 N 1.31602 * 119.99978 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99951 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.47257 * 59.99754 * 26 24 22 28 28 H 1.48494 * 109.47274 * 180.02562 * 26 24 22 29 29 H 1.48507 * 109.47106 * 299.99677 * 26 24 22 30 30 H 1.08992 * 109.47196 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47269 * 59.99988 * 1 2 3 32 32 H 1.09001 * 109.46821 * 300.00488 * 1 2 3 33 33 H 1.08004 * 120.07576 * 0.02562 * 4 3 2 34 34 H 1.08000 * 119.99394 * 0.26661 * 6 5 4 35 35 H 0.97000 * 119.99452 * 0.02562 * 8 7 6 36 36 H 1.09000 * 109.46919 * 59.99821 * 13 12 11 37 37 H 1.08997 * 109.47489 * 180.02562 * 13 12 11 38 38 H 1.09008 * 109.46682 * 300.00132 * 13 12 11 39 39 H 1.09000 * 109.47048 * 59.99221 * 14 12 11 40 40 H 1.08989 * 109.47202 * 179.97438 * 14 12 11 41 41 H 1.09007 * 109.47017 * 299.99675 * 14 12 11 42 42 H 1.08997 * 109.46981 * 60.00428 * 15 12 11 43 43 H 1.09006 * 109.46516 * 180.02562 * 15 12 11 44 44 H 1.09000 * 109.47432 * 299.99891 * 15 12 11 45 45 H 1.07999 * 125.95696 * 179.77203 * 16 11 10 46 46 H 1.08001 * 119.99942 * 179.75134 * 18 5 4 47 47 H 1.08002 * 119.92065 * 179.97438 * 19 18 5 48 48 H 0.97006 * 119.99943 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2937 2.3703 -0.0059 5 6 1.9316 3.6141 -0.0016 6 6 1.1340 4.8527 -0.0031 7 7 1.7283 6.0079 -0.0045 8 7 0.9698 7.1859 -0.0065 9 6 1.6031 8.4174 -0.0075 10 7 0.9974 9.5649 -0.0144 11 6 1.7598 10.6423 -0.0104 12 6 1.1951 12.0395 -0.0131 13 6 1.3506 12.6498 -1.4075 14 6 -0.2879 11.9909 0.3599 15 6 1.9494 12.8963 1.0057 16 6 3.0710 10.3944 -0.0096 17 16 3.2973 8.6473 -0.0072 18 6 3.3286 3.6804 -0.0016 19 6 4.0733 2.5214 -0.0011 20 6 3.4397 1.2845 0.0001 21 8 4.1775 0.1457 0.0011 22 6 5.5134 0.2820 -0.1166 23 1 5.9573 1.2666 -0.1238 24 6 6.3173 -0.8413 -0.2283 25 7 5.7764 -2.0410 -0.2200 26 14 8.1686 -0.6525 -0.3907 27 1 8.7009 0.0523 0.8031 28 1 8.7959 -1.9945 -0.4944 29 1 8.4808 0.1348 -1.6106 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 0.5139 0.8900 33 1 0.2151 2.3153 -0.0100 34 1 0.0553 4.8002 -0.0031 35 1 0.0009 7.1388 -0.0064 36 1 0.8132 12.0393 -2.1332 37 1 0.9426 13.6605 -1.4093 38 1 2.4072 12.6843 -1.6732 39 1 -0.3987 11.5560 1.3533 40 1 -0.6962 13.0014 0.3584 41 1 -0.8253 11.3805 -0.3659 42 1 3.0059 12.9309 0.7399 43 1 1.5407 13.9068 1.0040 44 1 1.8386 12.4615 1.9991 45 1 3.8565 11.1356 -0.0101 46 1 3.8237 4.6402 -0.0024 47 1 5.1520 2.5741 -0.0015 48 1 6.3391 -2.8273 -0.2986 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006306398.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:45 Heat of formation + Delta-G solvation = 48.146298 kcal Electronic energy + Delta-G solvation = -29847.331623 eV Core-core repulsion = 25610.584067 eV Total energy + Delta-G solvation = -4236.747556 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 375.140 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -40.24793 -39.73755 -37.73585 -37.69127 -36.51606 -35.61663 -32.74879 -32.18008 -29.81203 -29.49895 -28.58599 -27.51731 -27.22784 -26.57534 -25.57467 -24.46148 -23.07165 -21.78618 -21.54749 -20.52906 -18.95802 -18.23925 -18.01176 -17.51180 -16.92063 -16.37764 -15.83663 -15.39971 -15.27220 -15.22472 -15.20834 -14.68883 -14.19984 -14.11225 -14.02515 -13.95151 -13.61598 -13.48524 -13.31586 -12.98762 -12.48743 -12.45956 -12.36836 -12.18983 -11.89045 -11.82269 -11.65739 -11.62260 -11.22181 -11.21577 -11.12101 -11.03579 -10.89228 -10.80193 -10.72282 -10.55368 -10.26179 -9.82698 -9.63710 -9.58304 -9.16601 -8.93911 -8.11490 -7.78299 -6.92103 -6.61360 -4.13672 0.77220 1.22344 1.41882 1.88421 2.10467 2.28518 2.69927 2.97449 3.06582 3.10504 3.11198 3.83819 3.90329 4.21122 4.42628 4.59873 4.76015 4.76511 4.90064 4.92422 5.00731 5.10770 5.21506 5.32959 5.35073 5.41033 5.46607 5.48477 5.52739 5.55898 5.63914 5.68791 5.71051 5.78360 5.79871 5.83974 5.89858 6.05728 6.08850 6.12031 6.19138 6.21669 6.42742 6.74729 6.81308 6.93863 7.08701 7.18833 7.44745 7.66159 7.78765 8.03561 8.19179 8.81809 9.48912 10.54142 Molecular weight = 375.14amu Principal moments of inertia in cm(-1) A = 0.012927 B = 0.001716 C = 0.001532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2165.548990 B =16311.310740 C =18276.034569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.302 6.302 3 C 0.053 3.947 4 C -0.133 4.133 5 C -0.145 4.145 6 C 0.160 3.840 7 N -0.277 5.277 8 N -0.544 5.544 9 C 0.333 3.667 10 N -0.549 5.549 11 C 0.123 3.877 12 C 0.005 3.995 13 C -0.136 4.136 14 C -0.127 4.127 15 C -0.138 4.138 16 C -0.317 4.317 17 S 0.154 5.846 18 C -0.040 4.040 19 C -0.226 4.226 20 C 0.151 3.849 21 O -0.148 6.148 22 C -0.389 4.389 23 H 0.098 0.902 24 C 0.042 3.958 25 N -0.845 5.845 26 Si 0.945 3.055 27 H -0.267 1.267 28 H -0.276 1.276 29 H -0.267 1.267 30 H 0.092 0.908 31 H 0.047 0.953 32 H 0.046 0.954 33 H 0.123 0.877 34 H 0.110 0.890 35 H 0.394 0.606 36 H 0.056 0.944 37 H 0.061 0.939 38 H 0.057 0.943 39 H 0.054 0.946 40 H 0.051 0.949 41 H 0.062 0.938 42 H 0.058 0.942 43 H 0.061 0.939 44 H 0.057 0.943 45 H 0.170 0.830 46 H 0.122 0.878 47 H 0.138 0.862 48 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.406 21.854 0.245 23.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.216 6.216 3 C 0.008 3.992 4 C -0.154 4.154 5 C -0.149 4.149 6 C -0.048 4.048 7 N -0.085 5.085 8 N -0.272 5.272 9 C -0.037 4.037 10 N -0.274 5.274 11 C -0.010 4.010 12 C 0.002 3.998 13 C -0.194 4.194 14 C -0.184 4.184 15 C -0.196 4.196 16 C -0.458 4.458 17 S 0.403 5.597 18 C -0.060 4.060 19 C -0.246 4.246 20 C 0.094 3.906 21 O -0.048 6.048 22 C -0.465 4.465 23 H 0.115 0.885 24 C -0.165 4.165 25 N -0.478 5.478 26 Si 0.768 3.232 27 H -0.192 1.192 28 H -0.201 1.201 29 H -0.192 1.192 30 H 0.110 0.890 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.141 0.859 34 H 0.128 0.872 35 H 0.234 0.766 36 H 0.076 0.924 37 H 0.080 0.920 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.070 0.930 41 H 0.081 0.919 42 H 0.077 0.923 43 H 0.080 0.920 44 H 0.076 0.924 45 H 0.188 0.812 46 H 0.139 0.861 47 H 0.156 0.844 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.106 20.912 0.243 22.429 hybrid contribution -1.098 0.710 -0.073 1.309 sum -9.204 21.621 0.170 23.499 Atomic orbital electron populations 1.22911 0.80251 1.03097 1.00304 1.86252 1.19501 1.26120 1.89733 1.17951 0.89330 0.84460 1.07490 1.20650 0.98446 0.90563 1.05776 1.17386 0.92412 0.88663 1.16472 1.24252 0.97303 0.90168 0.93037 1.74788 1.22239 0.91910 1.19537 1.44330 1.06372 0.99208 1.77240 1.22748 0.94407 0.87802 0.98762 1.66114 1.38253 0.95763 1.27282 1.19557 0.88549 0.93592 0.99276 1.19149 0.96130 0.88110 0.96384 1.21869 1.02056 1.00332 0.95118 1.21679 0.93827 1.00817 1.02111 1.21908 1.00046 0.99081 0.98538 1.26410 1.00350 0.98360 1.20692 1.84320 1.03451 1.00417 1.71465 1.20908 0.92246 0.97724 0.95154 1.20865 1.00849 0.90627 1.12270 1.18875 0.88278 0.87695 0.95794 1.84016 1.19744 1.25836 1.75167 1.21462 0.78345 0.95115 1.51586 0.88485 1.25395 1.00901 0.94165 0.96073 1.70075 1.36721 0.97793 1.43171 0.85717 0.79775 0.78186 0.79479 1.19206 1.20121 1.19205 0.88995 0.93476 0.93496 0.85890 0.87233 0.76589 0.92449 0.92043 0.92388 0.92670 0.93006 0.91900 0.92278 0.92006 0.92396 0.81240 0.86052 0.84418 0.91569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 9.81 101.05 0.99 1.40 16 2 O -0.30 -6.12 10.28 -34.21 -0.35 -6.47 16 3 C 0.05 1.08 6.70 -39.12 -0.26 0.81 16 4 C -0.13 -2.17 8.77 -39.03 -0.34 -2.51 16 5 C -0.14 -2.33 5.87 -105.02 -0.62 -2.95 16 6 C 0.16 2.14 10.75 -14.67 -0.16 1.98 16 7 N -0.28 -3.96 10.11 32.14 0.33 -3.64 16 8 N -0.54 -7.16 6.43 29.76 0.19 -6.97 16 9 C 0.33 4.58 8.36 -87.75 -0.73 3.85 16 10 N -0.55 -7.36 9.60 -11.38 -0.11 -7.46 16 11 C 0.12 1.43 5.40 -84.20 -0.45 0.98 16 12 C 0.01 0.05 0.90 -155.66 -0.14 -0.09 16 13 C -0.14 -1.06 8.43 37.16 0.31 -0.75 16 14 C -0.13 -1.14 7.92 37.16 0.29 -0.84 16 15 C -0.14 -1.01 8.13 37.16 0.30 -0.70 16 16 C -0.32 -3.50 10.38 29.05 0.30 -3.19 16 17 S 0.15 1.95 22.72 -107.50 -2.44 -0.50 16 18 C -0.04 -0.70 9.57 -39.15 -0.37 -1.07 16 19 C -0.23 -4.61 9.14 -39.49 -0.36 -4.97 16 20 C 0.15 3.50 6.67 -38.82 -0.26 3.24 16 21 O -0.15 -4.06 9.53 -14.31 -0.14 -4.20 16 22 C -0.39 -10.32 9.48 30.86 0.29 -10.03 16 23 H 0.10 2.33 5.19 -52.48 -0.27 2.06 16 24 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 25 N -0.85 -23.77 13.67 55.48 0.76 -23.01 16 26 Si 0.94 19.47 29.55 -169.99 -5.02 14.44 16 27 H -0.27 -5.33 7.11 56.52 0.40 -4.92 16 28 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 29 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 30 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.05 0.55 7.65 -51.93 -0.40 0.15 16 32 H 0.05 0.55 7.67 -51.93 -0.40 0.15 16 33 H 0.12 1.57 6.28 -52.48 -0.33 1.24 16 34 H 0.11 1.12 8.03 -52.49 -0.42 0.69 16 35 H 0.39 4.39 8.78 -182.59 -1.60 2.79 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.06 0.43 8.14 -51.92 -0.42 0.01 16 39 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.06 0.63 7.97 -51.93 -0.41 0.22 16 42 H 0.06 0.39 7.14 -51.93 -0.37 0.02 16 43 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.17 1.47 7.30 -52.49 -0.38 1.08 16 46 H 0.12 1.99 7.54 -52.49 -0.40 1.59 16 47 H 0.14 2.76 5.62 -52.49 -0.29 2.47 16 48 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 417.59 15.07 6.29 6.29 Total: -1.00 -30.91 417.59 -9.59 -40.50 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: -7.80 Total: 4.87 kcal Atomic # 6 Polarization: -12.56 SS G_CDS: -1.30 Total: -13.87 kcal Atomic # 7 Polarization: -42.24 SS G_CDS: 1.17 Total: -41.08 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: -0.49 Total: -10.66 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -5.02 Total: 14.44 kcal Atomic # 16 Polarization: 1.95 SS G_CDS: -2.44 Total: -0.50 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -30.91 -9.59 -40.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006306398.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.648 kcal (2) G-P(sol) polarization free energy of solvation -30.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.502 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds