Wall clock time and date at job start Tue Mar 31 2020 07:04:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46494 * 120.00148 * 2 1 4 4 S 1.65598 * 119.99740 * 180.02562 * 2 1 3 5 5 O 1.42097 * 106.40450 * 219.00526 * 4 2 1 6 6 O 1.42098 * 106.40519 * 351.92767 * 4 2 1 7 7 C 1.76205 * 107.21931 * 105.46493 * 4 2 1 8 8 C 1.37908 * 119.92578 * 113.21757 * 7 4 2 9 9 C 1.39682 * 119.84869 * 179.75526 * 8 7 4 10 10 C 1.47616 * 120.13803 * 180.25383 * 9 8 7 11 11 O 1.21517 * 120.00069 * 0.26491 * 10 9 8 12 12 O 1.34740 * 119.99705 * 180.27097 * 10 9 8 13 13 C 1.34862 * 116.99940 * 179.97438 * 12 10 9 14 14 H 1.08000 * 119.99578 * 359.97438 * 13 12 10 15 15 C 1.38801 * 120.00111 * 179.97438 * 13 12 10 16 16 N 1.31421 * 120.00047 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00071 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47025 * 60.00101 * 17 15 13 19 19 H 1.48502 * 109.46951 * 179.97438 * 17 15 13 20 20 H 1.48491 * 109.47203 * 299.99961 * 17 15 13 21 21 C 1.39708 * 119.71622 * 0.51814 * 9 8 7 22 22 C 1.37857 * 119.85911 * 359.73155 * 21 9 8 23 23 C 1.38469 * 119.92871 * 293.49576 * 7 4 2 24 24 Br 1.89099 * 119.85570 * 0.02562 * 23 7 4 25 25 H 1.09001 * 109.46839 * 275.46333 * 1 2 3 26 26 H 1.08997 * 109.46828 * 35.45610 * 1 2 3 27 27 H 1.08994 * 109.47125 * 155.45971 * 1 2 3 28 28 H 1.09005 * 109.47391 * 270.00432 * 3 2 1 29 29 H 1.08997 * 109.47208 * 30.00037 * 3 2 1 30 30 H 1.08998 * 109.47311 * 150.00506 * 3 2 1 31 31 H 1.07993 * 120.07378 * 359.97438 * 8 7 4 32 32 H 0.96999 * 120.00066 * 179.97438 * 16 15 13 33 33 H 1.08003 * 120.07351 * 179.71173 * 21 9 8 34 34 H 1.07998 * 119.93639 * 180.02562 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 16 2.2930 -1.4342 -0.0006 5 8 3.4110 -1.2525 0.8574 6 8 1.3248 -2.4566 0.1903 7 6 2.9424 -1.6608 -1.6229 8 6 4.3057 -1.6286 -1.8289 9 6 4.8190 -1.8135 -3.1147 10 6 6.2774 -1.7859 -3.3416 11 8 7.0342 -1.6067 -2.4080 12 8 6.7692 -1.9592 -4.5840 13 6 8.1102 -1.9221 -4.7223 14 1 8.7377 -1.7588 -3.8586 15 6 8.6838 -2.0939 -5.9745 16 7 7.9202 -2.2932 -7.0253 17 14 10.5412 -2.0419 -6.1661 18 1 11.1542 -3.1135 -5.3407 19 1 10.8978 -2.2514 -7.5924 20 1 11.0483 -0.7203 -5.7175 21 6 3.9461 -2.0193 -4.1860 22 6 2.5852 -2.0441 -3.9673 23 6 2.0827 -1.8651 -2.6889 24 35 0.2144 -1.8992 -2.3984 25 1 -0.3633 0.0978 1.0230 26 1 -0.3633 0.8371 -0.5961 27 1 -0.3633 -0.9348 -0.4268 28 1 2.3792 1.5834 -1.0277 29 1 1.6085 2.0283 0.5138 30 1 3.1500 1.1383 0.5137 31 1 4.9749 -1.4642 -0.9974 32 1 8.3210 -2.4129 -7.9005 33 1 4.3365 -2.1583 -5.1833 34 1 1.9093 -2.2035 -4.7944 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000006435375.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:46 Heat of formation + Delta-G solvation = -122.336993 kcal Electronic energy + Delta-G solvation = -24032.107613 eV Core-core repulsion = 20104.003299 eV Total energy + Delta-G solvation = -3928.104315 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 376.981 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.51192 -40.06915 -38.56272 -37.38974 -37.22010 -37.03696 -34.47660 -33.93841 -32.76884 -31.08293 -28.98727 -27.78369 -25.72007 -25.12282 -24.62005 -22.38844 -20.40722 -19.97841 -19.54412 -18.72503 -17.97849 -17.47426 -17.31828 -16.76061 -16.68328 -16.55612 -16.10062 -15.60197 -15.42015 -15.32844 -14.72838 -14.67859 -14.14618 -13.73261 -13.72130 -13.67662 -13.50997 -13.39029 -13.27592 -13.04945 -12.77358 -12.62599 -12.49675 -12.30687 -12.18657 -12.11429 -12.02224 -11.34013 -11.04603 -10.82482 -10.76932 -10.20129 -10.08351 -8.64481 -6.40762 -1.01773 -0.81864 -0.40257 -0.01497 1.19611 1.32968 1.48350 1.48568 1.76675 1.99048 2.24685 2.41901 2.51811 2.93313 3.07989 3.41310 3.73971 3.79790 3.83197 3.90690 4.13775 4.41621 4.47594 4.54566 4.55133 4.77420 4.77898 4.94391 4.97322 4.98404 5.02492 5.08530 5.25012 5.50511 5.71060 6.46485 6.79727 7.56398 8.54832 Molecular weight = 376.98amu Principal moments of inertia in cm(-1) A = 0.018510 B = 0.003006 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.344887 B = 9311.163049 C =10296.188831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.989 5.989 3 C 0.072 3.928 4 S 2.696 3.304 5 O -0.977 6.977 6 O -0.949 6.949 7 C -0.666 4.666 8 C 0.027 3.973 9 C -0.115 4.115 10 C 0.426 3.574 11 O -0.575 6.575 12 O -0.221 6.221 13 C -0.421 4.421 14 H 0.085 0.915 15 C 0.004 3.996 16 N -0.889 5.889 17 Si 1.018 2.982 18 H -0.263 1.263 19 H -0.257 1.257 20 H -0.261 1.261 21 C -0.011 4.011 22 C -0.100 4.100 23 C 0.009 3.991 24 Br 0.011 6.989 25 H 0.076 0.924 26 H 0.100 0.900 27 H 0.077 0.923 28 H 0.066 0.934 29 H 0.112 0.888 30 H 0.070 0.930 31 H 0.150 0.850 32 H 0.284 0.716 33 H 0.156 0.844 34 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.122 5.871 7.293 23.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.832 5.832 3 C -0.072 4.072 4 S 2.782 3.218 5 O -0.967 6.967 6 O -0.939 6.939 7 C -0.752 4.752 8 C 0.006 3.994 9 C -0.117 4.117 10 C 0.275 3.725 11 O -0.475 6.475 12 O -0.128 6.128 13 C -0.497 4.497 14 H 0.103 0.897 15 C -0.198 4.198 16 N -0.524 5.524 17 Si 0.836 3.164 18 H -0.187 1.187 19 H -0.180 1.180 20 H -0.185 1.185 21 C -0.030 4.030 22 C -0.120 4.120 23 C -0.072 4.072 24 Br 0.097 6.903 25 H 0.094 0.906 26 H 0.119 0.881 27 H 0.096 0.904 28 H 0.085 0.915 29 H 0.131 0.869 30 H 0.089 0.911 31 H 0.167 0.833 32 H 0.093 0.907 33 H 0.174 0.826 34 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -21.544 5.316 8.036 23.601 hybrid contribution 1.785 0.046 -0.928 2.012 sum -19.760 5.362 7.109 21.673 Atomic orbital electron populations 1.22181 0.76205 1.05010 1.04041 1.57003 1.16217 1.20745 1.89188 1.21898 0.97245 0.84711 1.03357 1.02000 0.72879 0.73747 0.73143 1.93564 1.54115 1.86137 1.62868 1.93614 1.59906 1.55686 1.84701 1.31006 1.01238 1.18603 1.24336 1.20916 0.93234 0.88717 0.96492 1.19454 0.89756 1.06746 0.95761 1.21407 0.89749 0.78975 0.82327 1.90626 1.60944 1.51667 1.44226 1.83877 1.26035 1.74438 1.28478 1.21522 0.78484 1.53322 0.96330 0.89721 1.26541 1.06236 0.94201 0.92853 1.70013 1.38539 1.43727 1.00160 0.84681 0.73143 0.79859 0.78716 1.18715 1.18018 1.18497 1.21990 0.92944 0.88715 0.99359 1.21575 0.95010 0.99122 0.96325 1.21847 0.92034 0.98035 0.95295 1.96811 1.00999 1.96864 1.95594 0.90592 0.88128 0.90434 0.91538 0.86943 0.91150 0.83271 0.90693 0.82643 0.79646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.91 9.53 127.77 1.22 2.13 16 2 N -0.99 -18.38 3.48 -562.70 -1.96 -20.33 16 3 C 0.07 1.08 10.72 127.77 1.37 2.45 16 4 S 2.70 72.95 4.98 -56.49 -0.28 72.66 16 5 O -0.98 -32.47 15.96 -128.00 -2.04 -34.51 16 6 O -0.95 -27.20 14.71 -128.00 -1.88 -29.08 16 7 C -0.67 -19.61 5.91 22.25 0.13 -19.48 16 8 C 0.03 0.96 9.09 22.54 0.20 1.16 16 9 C -0.11 -4.61 5.87 -20.10 -0.12 -4.73 16 10 C 0.43 22.09 7.83 70.30 0.55 22.64 16 11 O -0.57 -32.60 15.59 19.78 0.31 -32.29 16 12 O -0.22 -12.68 8.99 11.18 0.10 -12.58 16 13 C -0.42 -24.99 9.65 67.95 0.66 -24.33 16 14 H 0.09 5.12 6.86 -2.91 -0.02 5.10 16 15 C 0.00 0.22 5.50 84.89 0.47 0.68 16 16 N -0.89 -49.71 13.67 21.63 0.30 -49.41 16 17 Si 1.02 41.78 29.55 68.60 2.03 43.80 16 18 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 19 H -0.26 -9.59 7.11 99.48 0.71 -8.89 16 20 H -0.26 -10.33 7.11 99.48 0.71 -9.63 16 21 C -0.01 -0.35 9.62 22.53 0.22 -0.13 16 22 C -0.10 -2.49 9.77 22.25 0.22 -2.27 16 23 C 0.01 0.23 6.22 22.39 0.14 0.37 16 24 Br 0.01 0.21 27.14 -20.37 -0.55 -0.35 16 25 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.10 0.78 8.11 -2.39 -0.02 0.76 16 27 H 0.08 1.18 4.20 -2.39 -0.01 1.17 16 28 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 29 H 0.11 0.96 8.07 -2.39 -0.02 0.94 16 30 H 0.07 1.25 7.27 -2.39 -0.02 1.23 16 31 H 0.15 5.69 6.91 -2.91 -0.02 5.67 16 32 H 0.28 14.33 8.31 -92.71 -0.77 13.56 16 33 H 0.16 5.25 7.61 -2.91 -0.02 5.23 16 34 H 0.19 3.15 8.06 -2.91 -0.02 3.13 16 Total: -1.00 -75.73 326.78 2.23 -73.50 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: 1.16 Total: 10.09 kcal Atomic # 6 Polarization: -26.56 SS G_CDS: 5.05 Total: -21.51 kcal Atomic # 7 Polarization: -68.08 SS G_CDS: -1.66 Total: -69.75 kcal Atomic # 8 Polarization: -104.94 SS G_CDS: -3.52 Total: -108.46 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 2.03 Total: 43.80 kcal Atomic # 16 Polarization: 72.95 SS G_CDS: -0.28 Total: 72.66 kcal Atomic # 35 Polarization: 0.21 SS G_CDS: -0.55 Total: -0.35 kcal Total: -75.73 2.23 -73.50 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006435375.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.835 kcal (2) G-P(sol) polarization free energy of solvation -75.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds