Wall clock time and date at job start Tue Mar 31 2020 05:00:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35954 * 117.00189 * 2 1 4 4 C 1.38069 * 119.99780 * 359.97438 * 3 2 1 5 5 C 1.39986 * 119.84118 * 179.97438 * 4 3 2 6 6 C 1.46955 * 120.08444 * 180.02562 * 5 4 3 7 7 C 1.35044 * 119.99958 * 135.48137 * 6 5 4 8 8 C 1.46210 * 120.00255 * 348.11734 * 7 6 5 9 9 O 1.21745 * 119.99733 * 353.29713 * 8 7 6 10 10 N 1.34773 * 120.00297 * 173.29083 * 8 7 6 11 11 C 1.39919 * 120.00270 * 184.78928 * 10 8 7 12 12 C 1.38892 * 120.03793 * 144.12839 * 11 10 8 13 13 C 1.38122 * 119.99774 * 179.79162 * 12 11 10 14 14 C 1.38438 * 120.06974 * 0.46478 * 13 12 11 15 15 F 1.35099 * 119.96019 * 179.77017 * 14 13 12 16 16 C 1.38676 * 120.07442 * 359.78910 * 14 13 12 17 17 F 1.35095 * 119.99721 * 179.97438 * 16 14 13 18 18 C 1.38312 * 120.00267 * 359.97387 * 16 14 13 19 19 C 1.40032 * 119.83847 * 0.02562 * 5 4 3 20 20 C 1.37649 * 119.99921 * 359.97438 * 19 5 4 21 21 C 1.39059 * 120.16141 * 359.97438 * 20 19 5 22 22 O 1.35616 * 119.91747 * 180.02562 * 21 20 19 23 23 C 1.34755 * 117.00548 * 354.62825 * 22 21 20 24 24 H 1.08004 * 119.99529 * 5.05027 * 23 22 21 25 25 C 1.38698 * 120.00560 * 185.05263 * 23 22 21 26 26 N 1.31517 * 119.99897 * 359.97438 * 25 23 22 27 27 Si 1.86799 * 120.00509 * 179.97438 * 25 23 22 28 28 H 1.48502 * 109.46883 * 60.00258 * 27 25 23 29 29 H 1.48498 * 109.47571 * 179.97438 * 27 25 23 30 30 H 1.48504 * 109.47123 * 300.00613 * 27 25 23 31 31 H 1.09000 * 109.47161 * 60.00229 * 1 2 3 32 32 H 1.09000 * 109.46902 * 179.97438 * 1 2 3 33 33 H 1.08991 * 109.47230 * 299.99963 * 1 2 3 34 34 H 1.08003 * 120.08417 * 0.02562 * 4 3 2 35 35 H 1.08000 * 119.99617 * 315.48834 * 6 5 4 36 36 H 1.08004 * 119.99732 * 168.11513 * 7 6 5 37 37 H 0.97006 * 119.99902 * 4.79850 * 10 8 7 38 38 H 1.08004 * 120.00176 * 0.02562 * 12 11 10 39 39 H 1.07994 * 119.96675 * 180.22762 * 13 12 11 40 40 H 1.08001 * 120.03568 * 180.02562 * 18 16 14 41 41 H 1.07992 * 120.00356 * 180.27127 * 19 5 4 42 42 H 1.08000 * 119.91910 * 179.97438 * 20 19 5 43 43 H 0.96999 * 120.00552 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2113 0.0000 4 6 1.2943 2.3693 -0.0005 5 6 1.9333 3.6148 0.0000 6 6 1.1381 4.8506 0.0000 7 6 1.4738 5.8695 0.8204 8 6 2.4536 5.6586 1.8849 9 8 2.8757 4.5392 2.1107 10 7 2.8896 6.7034 2.6161 11 6 3.8999 6.5191 3.5665 12 6 4.8462 7.5137 3.7770 13 6 5.8406 7.3328 4.7184 14 6 5.9011 6.1566 5.4461 15 9 6.8774 5.9800 6.3630 16 6 4.9609 5.1594 5.2346 17 9 5.0217 4.0121 5.9452 18 6 3.9609 5.3394 4.2961 19 6 3.3321 3.6803 0.0006 20 6 4.0753 2.5217 0.0011 21 6 3.4405 1.2844 0.0016 22 8 4.1776 0.1460 0.0027 23 6 5.5136 0.2820 -0.1093 24 1 5.9577 1.2665 -0.1124 25 6 6.3183 -0.8421 -0.2205 26 7 5.7775 -2.0410 -0.2163 27 14 8.1702 -0.6536 -0.3764 28 1 8.6987 0.0488 0.8205 29 1 8.7976 -1.9956 -0.4793 30 1 8.4867 0.1361 -1.5936 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8899 34 1 0.2157 2.3143 -0.0005 35 1 0.2853 4.9440 -0.6560 36 1 1.0184 6.8401 0.6901 37 1 2.5030 7.5831 2.4837 38 1 4.8023 8.4302 3.2073 39 1 6.5739 8.1080 4.8842 40 1 3.2282 4.5633 4.1313 41 1 3.8278 4.6397 0.0054 42 1 5.1540 2.5737 0.0011 43 1 6.3402 -2.8272 -0.2944 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006497890.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:37 Heat of formation + Delta-G solvation = -91.435593 kcal Electronic energy + Delta-G solvation = -33441.851428 eV Core-core repulsion = 28477.084915 eV Total energy + Delta-G solvation = -4964.766513 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 375.111 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -49.47027 -48.54191 -40.67445 -39.53118 -38.46307 -37.49983 -36.26195 -34.60201 -33.09621 -32.17505 -31.00769 -29.70824 -29.45930 -28.35956 -26.46956 -25.40949 -24.25873 -23.49003 -22.32066 -21.53015 -21.15716 -19.60345 -18.34614 -18.04203 -17.94197 -17.71233 -17.08184 -16.55348 -16.27144 -16.21338 -15.74990 -15.25291 -15.09106 -15.00333 -14.93904 -14.58309 -14.48325 -14.28080 -14.04191 -13.79888 -13.76051 -13.41593 -13.34544 -13.26612 -12.78686 -12.75217 -12.41053 -12.30249 -11.69389 -11.66725 -11.46474 -11.38372 -11.08063 -10.92665 -10.67302 -10.52220 -10.39068 -10.32613 -9.69562 -9.43339 -9.22810 -9.11327 -8.71825 -8.31485 -7.77739 -6.71365 -6.45951 -3.97952 0.64835 0.84669 1.10287 2.26943 2.56223 2.86472 3.09974 3.14632 3.17261 3.18387 3.46325 3.73962 3.96385 4.08110 4.23974 4.38565 4.57229 4.68304 4.81692 4.96748 5.03402 5.08217 5.16589 5.18163 5.42485 5.51858 5.59724 5.61028 5.68100 5.69513 5.75347 5.77384 5.88058 5.95342 6.13305 6.19083 6.22774 6.38133 6.47754 6.65194 6.69109 6.97361 7.09747 7.25066 7.26930 7.40427 7.66019 7.95427 8.18187 8.23990 8.97923 9.69151 10.70601 Molecular weight = 375.11amu Principal moments of inertia in cm(-1) A = 0.006726 B = 0.003388 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4161.963840 B = 8261.533497 C =11037.381645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.305 6.305 3 C 0.041 3.959 4 C -0.133 4.133 5 C -0.167 4.167 6 C 0.040 3.960 7 C -0.270 4.270 8 C 0.539 3.461 9 O -0.487 6.487 10 N -0.677 5.677 11 C 0.177 3.823 12 C -0.133 4.133 13 C -0.107 4.107 14 C 0.043 3.957 15 F -0.132 7.132 16 C 0.092 3.908 17 F -0.124 7.124 18 C -0.131 4.131 19 C -0.011 4.011 20 C -0.222 4.222 21 C 0.154 3.846 22 O -0.154 6.154 23 C -0.389 4.389 24 H 0.094 0.906 25 C 0.041 3.959 26 N -0.851 5.851 27 Si 0.941 3.059 28 H -0.268 1.268 29 H -0.277 1.277 30 H -0.269 1.269 31 H 0.044 0.956 32 H 0.089 0.911 33 H 0.044 0.956 34 H 0.117 0.883 35 H 0.125 0.875 36 H 0.126 0.874 37 H 0.411 0.589 38 H 0.142 0.858 39 H 0.148 0.852 40 H 0.164 0.836 41 H 0.099 0.901 42 H 0.131 0.869 43 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.805 21.483 4.524 23.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.219 6.219 3 C -0.004 4.004 4 C -0.153 4.153 5 C -0.168 4.168 6 C 0.020 3.980 7 C -0.291 4.291 8 C 0.331 3.669 9 O -0.361 6.361 10 N -0.323 5.323 11 C 0.081 3.919 12 C -0.154 4.154 13 C -0.126 4.126 14 C 0.022 3.978 15 F -0.110 7.110 16 C 0.071 3.929 17 F -0.102 7.102 18 C -0.152 4.152 19 C -0.030 4.030 20 C -0.242 4.242 21 C 0.098 3.902 22 O -0.055 6.055 23 C -0.465 4.465 24 H 0.111 0.889 25 C -0.165 4.165 26 N -0.484 5.484 27 Si 0.765 3.235 28 H -0.193 1.193 29 H -0.201 1.201 30 H -0.194 1.194 31 H 0.063 0.937 32 H 0.108 0.892 33 H 0.063 0.937 34 H 0.135 0.865 35 H 0.143 0.857 36 H 0.144 0.856 37 H 0.247 0.753 38 H 0.159 0.841 39 H 0.165 0.835 40 H 0.181 0.819 41 H 0.117 0.883 42 H 0.149 0.851 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -7.384 19.867 4.678 21.705 hybrid contribution 0.680 0.611 0.233 0.943 sum -6.705 20.478 4.910 22.100 Atomic orbital electron populations 1.22855 0.80613 1.02789 1.00082 1.86230 1.19196 1.26442 1.90028 1.17935 0.89331 0.84399 1.08743 1.20659 0.97987 0.90896 1.05720 1.18005 0.92808 0.91238 1.14772 1.22354 0.93317 0.91116 0.91191 1.22435 1.05630 1.00740 1.00327 1.18732 0.81643 0.84128 0.82435 1.91041 1.55203 1.22148 1.67717 1.43603 1.37772 1.13362 1.37573 1.17421 0.90066 0.94403 0.90046 1.20804 0.93875 1.00476 1.00260 1.20788 0.99808 0.96007 0.95998 1.17665 0.89740 0.95992 0.94374 1.91516 1.59945 1.95663 1.63913 1.17523 0.97192 0.83094 0.95053 1.91560 1.95855 1.46597 1.76192 1.21277 0.99841 0.99938 0.94106 1.20487 0.91904 0.96525 0.94043 1.20718 1.00354 0.90858 1.12261 1.18827 0.88251 0.87535 0.95617 1.83982 1.19490 1.25786 1.76283 1.21398 0.78541 0.94873 1.51644 0.88895 1.25335 1.00575 0.94188 0.96372 1.70038 1.36445 0.97695 1.44224 0.85780 0.80315 0.78061 0.79332 1.19339 1.20144 1.19359 0.93707 0.89207 0.93743 0.86474 0.85713 0.85592 0.75275 0.84068 0.83464 0.81889 0.88301 0.85108 0.91797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 9.81 101.05 0.99 1.49 16 2 O -0.30 -6.86 10.28 -34.21 -0.35 -7.21 16 3 C 0.04 0.92 6.70 -39.13 -0.26 0.66 16 4 C -0.13 -2.47 8.77 -38.99 -0.34 -2.81 16 5 C -0.17 -2.89 4.48 -105.04 -0.47 -3.36 16 6 C 0.04 0.49 9.79 -37.19 -0.36 0.13 16 7 C -0.27 -2.84 9.90 -37.52 -0.37 -3.21 16 8 C 0.54 6.91 6.64 -13.06 -0.09 6.83 16 9 O -0.49 -8.57 9.76 5.15 0.05 -8.52 16 10 N -0.68 -6.34 5.33 -11.17 -0.06 -6.40 16 11 C 0.18 1.93 6.29 -83.70 -0.53 1.40 16 12 C -0.13 -1.11 9.96 -39.38 -0.39 -1.51 16 13 C -0.11 -0.98 10.02 -39.55 -0.40 -1.37 16 14 C 0.04 0.54 7.30 -39.35 -0.29 0.25 16 15 F -0.13 -1.77 17.18 2.25 0.04 -1.73 16 16 C 0.09 1.32 7.30 -39.39 -0.29 1.04 16 17 F -0.12 -2.02 17.18 2.25 0.04 -1.98 16 18 C -0.13 -1.81 8.67 -39.33 -0.34 -2.15 16 19 C -0.01 -0.21 6.66 -39.12 -0.26 -0.47 16 20 C -0.22 -5.09 9.14 -39.49 -0.36 -5.45 16 21 C 0.15 3.94 6.67 -38.76 -0.26 3.68 16 22 O -0.15 -4.60 9.52 -13.94 -0.13 -4.74 16 23 C -0.39 -11.19 9.48 30.90 0.29 -10.90 16 24 H 0.09 2.47 5.18 -52.48 -0.27 2.20 16 25 C 0.04 1.15 5.49 -17.52 -0.10 1.06 16 26 N -0.85 -25.47 13.67 55.48 0.76 -24.71 16 27 Si 0.94 20.97 29.55 -169.99 -5.02 15.95 16 28 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 29 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 30 H -0.27 -5.75 7.11 56.52 0.40 -5.34 16 31 H 0.04 0.60 7.66 -51.93 -0.40 0.20 16 32 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.04 0.62 7.66 -51.93 -0.40 0.22 16 34 H 0.12 1.77 6.28 -52.48 -0.33 1.45 16 35 H 0.13 1.14 8.06 -52.49 -0.42 0.71 16 36 H 0.13 0.82 8.06 -52.48 -0.42 0.40 16 37 H 0.41 2.17 8.80 -40.82 -0.36 1.81 16 38 H 0.14 0.71 8.06 -52.48 -0.42 0.29 16 39 H 0.15 0.93 8.06 -52.49 -0.42 0.51 16 40 H 0.16 2.60 6.25 -52.49 -0.33 2.27 16 41 H 0.10 1.74 7.13 -52.49 -0.37 1.36 16 42 H 0.13 3.01 5.61 -52.49 -0.29 2.71 16 43 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 380.14 15.07 5.73 5.73 Total: -1.00 -35.92 380.14 -6.77 -42.69 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -4.00 Total: 5.62 kcal Atomic # 6 Polarization: -10.89 SS G_CDS: -3.82 Total: -14.71 kcal Atomic # 7 Polarization: -31.81 SS G_CDS: 0.70 Total: -31.11 kcal Atomic # 8 Polarization: -20.03 SS G_CDS: -0.43 Total: -20.46 kcal Atomic # 9 Polarization: -3.78 SS G_CDS: 0.08 Total: -3.71 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.92 -6.77 -42.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006497890.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.745 kcal (2) G-P(sol) polarization free energy of solvation -35.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds