Wall clock time and date at job start Tue Mar 31 2020 05:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35954 * 117.00189 * 2 1 4 4 C 1.38069 * 119.99780 * 359.97438 * 3 2 1 5 5 C 1.39986 * 119.84118 * 179.97438 * 4 3 2 6 6 C 1.46955 * 120.08444 * 180.02562 * 5 4 3 7 7 C 1.35044 * 119.99958 * 135.48137 * 6 5 4 8 8 C 1.46210 * 120.00255 * 348.11734 * 7 6 5 9 9 O 1.21745 * 119.99733 * 353.29713 * 8 7 6 10 10 N 1.34773 * 120.00297 * 173.29083 * 8 7 6 11 11 C 1.39919 * 120.00270 * 184.78928 * 10 8 7 12 12 C 1.38892 * 120.03793 * 144.12839 * 11 10 8 13 13 C 1.38122 * 119.99774 * 179.79162 * 12 11 10 14 14 C 1.38438 * 120.06974 * 0.46478 * 13 12 11 15 15 F 1.35099 * 119.96019 * 179.77017 * 14 13 12 16 16 C 1.38676 * 120.07442 * 359.78910 * 14 13 12 17 17 F 1.35095 * 119.99721 * 179.97438 * 16 14 13 18 18 C 1.38312 * 120.00267 * 359.97387 * 16 14 13 19 19 C 1.40032 * 119.83847 * 0.02562 * 5 4 3 20 20 C 1.37649 * 119.99921 * 359.97438 * 19 5 4 21 21 C 1.39059 * 120.16141 * 359.97438 * 20 19 5 22 22 O 1.35616 * 119.91747 * 180.02562 * 21 20 19 23 23 C 1.34755 * 117.00548 * 354.62825 * 22 21 20 24 24 H 1.08004 * 119.99529 * 5.05027 * 23 22 21 25 25 C 1.38698 * 120.00560 * 185.05263 * 23 22 21 26 26 N 1.31517 * 119.99897 * 359.97438 * 25 23 22 27 27 Si 1.86799 * 120.00509 * 179.97438 * 25 23 22 28 28 H 1.48502 * 109.46883 * 60.00258 * 27 25 23 29 29 H 1.48498 * 109.47571 * 179.97438 * 27 25 23 30 30 H 1.48504 * 109.47123 * 300.00613 * 27 25 23 31 31 H 1.09000 * 109.47161 * 60.00229 * 1 2 3 32 32 H 1.09000 * 109.46902 * 179.97438 * 1 2 3 33 33 H 1.08991 * 109.47230 * 299.99963 * 1 2 3 34 34 H 1.08003 * 120.08417 * 0.02562 * 4 3 2 35 35 H 1.08000 * 119.99617 * 315.48834 * 6 5 4 36 36 H 1.08004 * 119.99732 * 168.11513 * 7 6 5 37 37 H 0.97006 * 119.99902 * 4.79850 * 10 8 7 38 38 H 1.08004 * 120.00176 * 0.02562 * 12 11 10 39 39 H 1.07994 * 119.96675 * 180.22762 * 13 12 11 40 40 H 1.08001 * 120.03568 * 180.02562 * 18 16 14 41 41 H 1.07992 * 120.00356 * 180.27127 * 19 5 4 42 42 H 1.08000 * 119.91910 * 179.97438 * 20 19 5 43 43 H 0.96999 * 120.00552 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2113 0.0000 4 6 1.2943 2.3693 -0.0005 5 6 1.9333 3.6148 0.0000 6 6 1.1381 4.8506 0.0000 7 6 1.4738 5.8695 0.8204 8 6 2.4536 5.6586 1.8849 9 8 2.8757 4.5392 2.1107 10 7 2.8896 6.7034 2.6161 11 6 3.8999 6.5191 3.5665 12 6 4.8462 7.5137 3.7770 13 6 5.8406 7.3328 4.7184 14 6 5.9011 6.1566 5.4461 15 9 6.8774 5.9800 6.3630 16 6 4.9609 5.1594 5.2346 17 9 5.0217 4.0121 5.9452 18 6 3.9609 5.3394 4.2961 19 6 3.3321 3.6803 0.0006 20 6 4.0753 2.5217 0.0011 21 6 3.4405 1.2844 0.0016 22 8 4.1776 0.1460 0.0027 23 6 5.5136 0.2820 -0.1093 24 1 5.9577 1.2665 -0.1124 25 6 6.3183 -0.8421 -0.2205 26 7 5.7775 -2.0410 -0.2163 27 14 8.1702 -0.6536 -0.3764 28 1 8.6987 0.0488 0.8205 29 1 8.7976 -1.9956 -0.4793 30 1 8.4867 0.1361 -1.5936 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8899 34 1 0.2157 2.3143 -0.0005 35 1 0.2853 4.9440 -0.6560 36 1 1.0184 6.8401 0.6901 37 1 2.5030 7.5831 2.4837 38 1 4.8023 8.4302 3.2073 39 1 6.5739 8.1080 4.8842 40 1 3.2282 4.5633 4.1313 41 1 3.8278 4.6397 0.0054 42 1 5.1540 2.5737 0.0011 43 1 6.3402 -2.8272 -0.2944 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000006497890.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:35 Heat of formation + Delta-G solvation = -116.620246 kcal Electronic energy + Delta-G solvation = -33442.943517 eV Core-core repulsion = 28477.084915 eV Total energy + Delta-G solvation = -4965.858602 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 375.111 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -50.55276 -49.63284 -41.72770 -41.10299 -39.51761 -39.24479 -37.74345 -35.64021 -34.57987 -33.91100 -31.91397 -31.15049 -30.74342 -29.67995 -27.82819 -27.34567 -25.39420 -24.44525 -23.47584 -23.20872 -22.37979 -20.70678 -19.89225 -19.53278 -19.21610 -18.66686 -18.38938 -17.82415 -17.51016 -17.35450 -16.90027 -16.76669 -16.62488 -16.43005 -16.07454 -16.00134 -15.61437 -15.57345 -15.28314 -15.22234 -15.07392 -14.93751 -14.74451 -14.24123 -13.99317 -13.95621 -13.66516 -13.49957 -13.35187 -13.06353 -12.84218 -12.74282 -12.56349 -12.50200 -12.21981 -12.01380 -11.83882 -11.39961 -11.27064 -10.90338 -10.73942 -10.29200 -10.07207 -9.45678 -9.15157 -8.48389 -8.37994 -6.12083 -0.32241 -0.06800 0.04978 0.63691 1.05809 1.29540 1.42530 1.46766 2.00006 2.15252 2.18519 2.51958 2.61496 2.81554 2.83651 3.16635 3.27037 3.43646 3.54338 3.84049 3.91792 3.95766 4.06372 4.12316 4.23801 4.33624 4.39628 4.43266 4.56721 4.61869 4.70245 4.75595 4.78731 4.82975 4.95883 4.98379 5.02859 5.08300 5.13129 5.30316 5.35494 5.51089 5.57904 5.77284 5.79369 5.94904 6.06645 6.51477 6.68494 6.95507 7.25631 7.79920 8.75172 Molecular weight = 375.11amu Principal moments of inertia in cm(-1) A = 0.006726 B = 0.003388 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4161.963840 B = 8261.533497 C =11037.381645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.350 6.350 3 C 0.026 3.974 4 C -0.134 4.134 5 C -0.123 4.123 6 C 0.010 3.990 7 C -0.219 4.219 8 C 0.524 3.476 9 O -0.543 6.543 10 N -0.652 5.652 11 C 0.171 3.829 12 C -0.104 4.104 13 C -0.091 4.091 14 C 0.029 3.971 15 F -0.142 7.142 16 C 0.053 3.947 17 F -0.150 7.150 18 C -0.151 4.151 19 C -0.022 4.022 20 C -0.226 4.226 21 C 0.094 3.906 22 O -0.221 6.221 23 C -0.415 4.415 24 H 0.097 0.903 25 C -0.023 4.023 26 N -0.917 5.917 27 Si 1.017 2.983 28 H -0.263 1.263 29 H -0.267 1.267 30 H -0.252 1.252 31 H 0.070 0.930 32 H 0.106 0.894 33 H 0.061 0.939 34 H 0.161 0.839 35 H 0.176 0.824 36 H 0.189 0.811 37 H 0.437 0.563 38 H 0.194 0.806 39 H 0.187 0.813 40 H 0.132 0.868 41 H 0.120 0.880 42 H 0.114 0.886 43 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.980 28.648 3.599 30.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.265 6.265 3 C -0.018 4.018 4 C -0.153 4.153 5 C -0.124 4.124 6 C -0.009 4.009 7 C -0.240 4.240 8 C 0.317 3.683 9 O -0.421 6.421 10 N -0.300 5.300 11 C 0.075 3.925 12 C -0.124 4.124 13 C -0.110 4.110 14 C 0.009 3.991 15 F -0.121 7.121 16 C 0.033 3.967 17 F -0.129 7.129 18 C -0.173 4.173 19 C -0.041 4.041 20 C -0.245 4.245 21 C 0.043 3.957 22 O -0.127 6.127 23 C -0.491 4.491 24 H 0.114 0.886 25 C -0.220 4.220 26 N -0.555 5.555 27 Si 0.836 3.164 28 H -0.187 1.187 29 H -0.191 1.191 30 H -0.176 1.176 31 H 0.089 0.911 32 H 0.124 0.876 33 H 0.080 0.920 34 H 0.178 0.822 35 H 0.193 0.807 36 H 0.206 0.794 37 H 0.278 0.722 38 H 0.211 0.789 39 H 0.204 0.796 40 H 0.150 0.850 41 H 0.138 0.862 42 H 0.132 0.868 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -9.633 27.169 3.758 29.070 hybrid contribution 0.906 -0.998 0.667 1.504 sum -8.728 26.171 4.426 27.940 Atomic orbital electron populations 1.23239 0.77184 1.04761 1.02030 1.86170 1.22962 1.27173 1.90208 1.18340 0.88838 0.86012 1.08628 1.21174 0.99900 0.89813 1.04397 1.18704 0.92554 0.93479 1.07677 1.22623 0.95050 0.88715 0.94541 1.23005 1.01834 1.02270 0.96844 1.19445 0.81754 0.83901 0.83208 1.91082 1.57184 1.24702 1.69104 1.43357 1.36813 1.13899 1.35907 1.17581 0.91219 0.93893 0.89846 1.21316 0.91392 1.00852 0.98849 1.21294 1.00321 0.94999 0.94378 1.18010 0.89260 0.96855 0.95022 1.91486 1.60248 1.95853 1.64482 1.17929 0.99087 0.83329 0.96379 1.91478 1.96170 1.48232 1.76983 1.21135 0.99655 1.00952 0.95531 1.20699 0.93110 0.95793 0.94461 1.20817 1.00031 0.91690 1.11978 1.19504 0.89891 0.87688 0.98590 1.83948 1.19808 1.27856 1.81111 1.21796 0.79256 0.95464 1.52623 0.88599 1.26614 1.06018 0.93498 0.95890 1.70194 1.38393 0.98635 1.48253 0.84688 0.73314 0.78562 0.79847 1.18740 1.19074 1.17631 0.91112 0.87578 0.92001 0.82211 0.80657 0.79395 0.72167 0.78885 0.79583 0.85041 0.86164 0.86837 0.91810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.67 9.81 113.37 1.11 1.79 16 2 O -0.35 -16.67 10.28 -79.06 -0.81 -17.48 16 3 C 0.03 1.26 6.70 22.56 0.15 1.42 16 4 C -0.13 -4.76 8.77 22.65 0.20 -4.56 16 5 C -0.12 -3.92 4.48 -20.14 -0.09 -4.01 16 6 C 0.01 0.18 9.79 23.82 0.23 0.41 16 7 C -0.22 -2.95 9.90 23.61 0.23 -2.71 16 8 C 0.52 11.11 6.64 86.31 0.57 11.68 16 9 O -0.54 -18.45 9.76 -4.49 -0.04 -18.49 16 10 N -0.65 -8.74 5.33 -307.44 -1.64 -10.38 16 11 C 0.17 3.16 6.29 38.15 0.24 3.40 16 12 C -0.10 -1.17 9.96 22.40 0.22 -0.94 16 13 C -0.09 -1.29 10.02 22.29 0.22 -1.07 16 14 C 0.03 0.71 7.30 22.42 0.16 0.87 16 15 F -0.14 -3.81 17.18 44.97 0.77 -3.04 16 16 C 0.05 1.61 7.30 22.39 0.16 1.77 16 17 F -0.15 -5.43 17.18 44.97 0.77 -4.66 16 18 C -0.15 -4.27 8.67 22.43 0.19 -4.08 16 19 C -0.02 -0.85 6.66 22.57 0.15 -0.70 16 20 C -0.23 -11.07 9.14 22.33 0.20 -10.87 16 21 C 0.09 5.27 6.67 22.80 0.15 5.42 16 22 O -0.22 -14.74 9.52 -6.54 -0.06 -14.80 16 23 C -0.42 -26.46 9.48 67.93 0.64 -25.82 16 24 H 0.10 5.67 5.18 -2.91 -0.02 5.66 16 25 C -0.02 -1.38 5.49 84.85 0.47 -0.92 16 26 N -0.92 -60.22 13.67 21.62 0.30 -59.92 16 27 Si 1.02 46.24 29.55 68.60 2.03 48.27 16 28 H -0.26 -11.47 7.11 99.48 0.71 -10.77 16 29 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 30 H -0.25 -10.60 7.11 99.48 0.71 -9.89 16 31 H 0.07 1.74 7.66 -2.39 -0.02 1.72 16 32 H 0.11 2.79 8.14 -2.39 -0.02 2.78 16 33 H 0.06 1.63 7.66 -2.39 -0.02 1.61 16 34 H 0.16 4.20 6.28 -2.91 -0.02 4.18 16 35 H 0.18 1.65 8.06 -2.91 -0.02 1.62 16 36 H 0.19 0.42 8.06 -2.91 -0.02 0.39 16 37 H 0.44 1.30 8.80 -92.70 -0.82 0.49 16 38 H 0.19 0.27 8.06 -2.91 -0.02 0.24 16 39 H 0.19 1.26 8.06 -2.91 -0.02 1.23 16 40 H 0.13 4.52 6.25 -2.91 -0.02 4.50 16 41 H 0.12 3.98 7.13 -2.91 -0.02 3.96 16 42 H 0.11 5.76 5.61 -2.91 -0.02 5.75 16 43 H 0.27 16.35 8.31 -92.71 -0.77 15.58 16 Total: -1.00 -97.96 380.14 6.84 -91.12 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: 0.30 Total: 18.30 kcal Atomic # 6 Polarization: -34.15 SS G_CDS: 5.24 Total: -28.91 kcal Atomic # 7 Polarization: -68.96 SS G_CDS: -1.34 Total: -70.30 kcal Atomic # 8 Polarization: -49.86 SS G_CDS: -0.92 Total: -50.78 kcal Atomic # 9 Polarization: -9.24 SS G_CDS: 1.54 Total: -7.70 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 2.03 Total: 48.27 kcal Total: -97.96 6.84 -91.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006497890.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.500 kcal (2) G-P(sol) polarization free energy of solvation -97.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds