Wall clock time and date at job start Tue Mar 31 2020 05:23:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35949 * 116.99955 * 2 1 4 4 C 1.38064 * 119.99936 * 359.97392 * 3 2 1 5 5 C 1.40005 * 119.83683 * 180.02562 * 4 3 2 6 6 C 1.46913 * 120.08099 * 180.02562 * 5 4 3 7 7 C 1.35146 * 120.00024 * 226.70339 * 6 5 4 8 8 C 1.41772 * 119.99849 * 11.03609 * 7 6 5 9 9 O 1.21653 * 120.00117 * 7.11039 * 8 7 6 10 10 O 1.34938 * 119.99758 * 187.10783 * 8 7 6 11 11 C 1.42903 * 117.00139 * 179.97438 * 10 8 7 12 12 C 1.50694 * 109.47439 * 180.02562 * 11 10 8 13 13 O 1.21276 * 119.99987 * 359.97438 * 12 11 10 14 14 N 1.34778 * 120.00058 * 180.02562 * 12 11 10 15 15 C 1.47017 * 125.64856 * 359.69151 * 14 12 11 16 16 C 1.54317 * 107.27802 * 180.97124 * 15 14 12 17 17 C 1.55155 * 102.86016 * 22.51975 * 16 15 14 18 18 C 1.47423 * 125.64976 * 179.97438 * 14 12 11 19 19 C 1.40053 * 119.83737 * 0.02562 * 5 4 3 20 20 C 1.37630 * 120.00403 * 0.02562 * 19 5 4 21 21 C 1.39075 * 120.16064 * 359.97438 * 20 19 5 22 22 O 1.35606 * 119.92179 * 180.02562 * 21 20 19 23 23 C 1.34757 * 116.99852 * 354.16287 * 22 21 20 24 24 H 1.07999 * 120.00066 * 5.06866 * 23 22 21 25 25 C 1.38709 * 120.00063 * 185.07364 * 23 22 21 26 26 N 1.31518 * 120.00146 * 359.97438 * 25 23 22 27 27 Si 1.86793 * 120.00305 * 179.97438 * 25 23 22 28 28 H 1.48504 * 109.47500 * 89.99770 * 27 25 23 29 29 H 1.48504 * 109.47576 * 209.99709 * 27 25 23 30 30 H 1.48503 * 109.47121 * 330.00055 * 27 25 23 31 31 H 1.08996 * 109.46894 * 300.00163 * 1 2 3 32 32 H 1.08998 * 109.46770 * 60.00381 * 1 2 3 33 33 H 1.09001 * 109.46911 * 180.02562 * 1 2 3 34 34 H 1.07996 * 120.08386 * 0.02562 * 4 3 2 35 35 H 1.07998 * 120.00419 * 46.70661 * 6 5 4 36 36 H 1.08000 * 119.99944 * 191.03385 * 7 6 5 37 37 H 1.08996 * 109.47037 * 300.00727 * 11 10 8 38 38 H 1.09006 * 109.46656 * 59.99611 * 11 10 8 39 39 H 1.09001 * 109.88083 * 300.51161 * 15 14 12 40 40 H 1.09006 * 109.88775 * 61.67800 * 15 14 12 41 41 H 1.09004 * 110.91681 * 264.10927 * 16 15 14 42 42 H 1.08995 * 110.59107 * 140.78214 * 16 15 14 43 43 H 1.09004 * 111.00368 * 206.23073 * 17 16 15 44 44 H 1.09003 * 110.99805 * 82.38421 * 17 16 15 45 45 H 1.09006 * 110.36320 * 274.67369 * 18 14 12 46 46 H 1.09004 * 110.36896 * 36.88037 * 18 14 12 47 47 H 1.08007 * 120.00090 * 180.27765 * 19 5 4 48 48 H 1.07995 * 119.92701 * 179.97438 * 20 19 5 49 49 H 0.96996 * 120.00624 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2942 2.3692 -0.0005 5 6 1.9334 3.6149 -0.0011 6 6 1.1385 4.8504 -0.0011 7 6 1.4475 5.8527 -0.8533 8 6 2.3777 5.6316 -1.9001 9 8 2.7995 4.5105 -2.1123 10 8 2.7952 6.6648 -2.6610 11 6 3.7336 6.3696 -3.6976 12 6 4.0819 7.6364 -4.4357 13 8 3.5760 8.6884 -4.1068 14 7 4.9548 7.6001 -5.4619 15 6 5.6425 6.3999 -5.9598 16 6 6.5557 6.8438 -7.1218 17 6 6.7649 8.3549 -6.8388 18 6 5.3826 8.7584 -6.2674 19 6 3.3324 3.6802 -0.0016 20 6 4.0755 2.5218 -0.0021 21 6 3.4407 1.2844 -0.0016 22 8 4.1776 0.1461 -0.0016 23 6 5.5127 0.2816 -0.1242 24 1 5.9569 1.2660 -0.1344 25 6 6.3165 -0.8431 -0.2375 26 7 5.7757 -2.0419 -0.2248 27 14 8.1671 -0.6553 -0.4083 28 1 8.7907 -0.6506 0.9395 29 1 8.7089 -1.7886 -1.2003 30 1 8.4733 0.6229 -1.0996 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 0.2157 2.3142 -0.0006 35 1 0.3072 4.9577 0.6799 36 1 0.9858 6.8221 -0.7369 37 1 4.6367 5.9446 -3.2598 38 1 3.2945 5.6531 -4.3918 39 1 6.2413 5.9585 -5.1631 40 1 4.9114 5.6766 -6.3210 41 1 6.0626 6.6960 -8.0826 42 1 7.5055 6.3101 -7.0884 43 1 6.9810 8.8984 -7.7587 44 1 7.5529 8.5088 -6.1016 45 1 4.6754 8.9395 -7.0768 46 1 5.4740 9.6445 -5.6391 47 1 3.8282 4.6398 0.0025 48 1 5.1542 2.5736 -0.0030 49 1 6.3378 -2.8285 -0.3036 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006497894.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:40 Heat of formation + Delta-G solvation = -111.999679 kcal Electronic energy + Delta-G solvation = -33834.898202 eV Core-core repulsion = 29116.160573 eV Total energy + Delta-G solvation = -4718.737629 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 375.161 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -40.78598 -40.04920 -39.44769 -37.76578 -37.53623 -36.90602 -35.61717 -33.18858 -32.30755 -32.19985 -29.88274 -29.55896 -29.00859 -28.16214 -26.52644 -25.47118 -24.33101 -23.40814 -21.67941 -21.57565 -21.33771 -19.74842 -19.44461 -18.13833 -18.04056 -17.29344 -17.19980 -17.02794 -16.47555 -16.28264 -15.78854 -15.34777 -15.12427 -14.99788 -14.60089 -14.53544 -13.99551 -13.91768 -13.83075 -13.71345 -13.53860 -13.43670 -13.33748 -13.03885 -12.86462 -12.53563 -12.40986 -12.27412 -11.78346 -11.75152 -11.66761 -11.56820 -11.42835 -11.20844 -11.13500 -11.00759 -10.79239 -10.61907 -10.55922 -10.39786 -10.10247 -9.86803 -9.46148 -9.29796 -9.02507 -8.77627 -7.84999 -6.76039 -6.50210 -4.02449 0.90336 2.17723 2.24477 2.31061 2.48436 3.09804 3.10369 3.15501 3.24971 3.30809 3.91510 4.00355 4.04970 4.12858 4.44003 4.47245 4.52205 4.81276 4.91393 4.96313 4.98941 5.00143 5.09388 5.13651 5.18490 5.20901 5.29735 5.40634 5.42796 5.50316 5.52357 5.54147 5.58384 5.67232 5.69754 5.72458 5.86698 5.88746 6.08530 6.20224 6.31663 6.40682 6.59104 6.63522 6.93125 7.05257 7.08003 7.20353 7.33907 7.61055 7.83001 7.91080 8.07465 8.20305 8.93602 9.65087 10.66477 Molecular weight = 375.16amu Principal moments of inertia in cm(-1) A = 0.007038 B = 0.002638 C = 0.002037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3977.624187 B =10611.948278 C =13740.751366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.304 6.304 3 C 0.042 3.958 4 C -0.132 4.132 5 C -0.167 4.167 6 C 0.050 3.950 7 C -0.247 4.247 8 C 0.491 3.509 9 O -0.481 6.481 10 O -0.339 6.339 11 C 0.056 3.944 12 C 0.534 3.466 13 O -0.519 6.519 14 N -0.621 5.621 15 C 0.091 3.909 16 C -0.131 4.131 17 C -0.134 4.134 18 C 0.107 3.893 19 C -0.019 4.019 20 C -0.220 4.220 21 C 0.153 3.847 22 O -0.154 6.154 23 C -0.389 4.389 24 H 0.094 0.906 25 C 0.040 3.960 26 N -0.851 5.851 27 Si 0.942 3.058 28 H -0.272 1.272 29 H -0.276 1.276 30 H -0.266 1.266 31 H 0.045 0.955 32 H 0.045 0.955 33 H 0.090 0.910 34 H 0.119 0.881 35 H 0.133 0.867 36 H 0.136 0.864 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.075 0.925 40 H 0.074 0.926 41 H 0.079 0.921 42 H 0.086 0.914 43 H 0.086 0.914 44 H 0.078 0.922 45 H 0.069 0.931 46 H 0.080 0.920 47 H 0.100 0.900 48 H 0.133 0.867 49 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.790 16.773 -9.669 19.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.218 6.218 3 C -0.002 4.002 4 C -0.151 4.151 5 C -0.168 4.168 6 C 0.031 3.969 7 C -0.266 4.266 8 C 0.338 3.662 9 O -0.369 6.369 10 O -0.256 6.256 11 C -0.022 4.022 12 C 0.321 3.679 13 O -0.394 6.394 14 N -0.358 5.358 15 C -0.032 4.032 16 C -0.169 4.169 17 C -0.173 4.173 18 C -0.015 4.015 19 C -0.037 4.037 20 C -0.239 4.239 21 C 0.097 3.903 22 O -0.056 6.056 23 C -0.465 4.465 24 H 0.112 0.888 25 C -0.165 4.165 26 N -0.484 5.484 27 Si 0.766 3.234 28 H -0.198 1.198 29 H -0.201 1.201 30 H -0.191 1.191 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.108 0.892 34 H 0.137 0.863 35 H 0.151 0.849 36 H 0.154 0.846 37 H 0.115 0.885 38 H 0.114 0.886 39 H 0.094 0.906 40 H 0.092 0.908 41 H 0.097 0.903 42 H 0.104 0.896 43 H 0.104 0.896 44 H 0.096 0.904 45 H 0.088 0.912 46 H 0.098 0.902 47 H 0.118 0.882 48 H 0.150 0.850 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -2.865 16.286 -9.499 19.071 hybrid contribution 0.773 0.189 -0.301 0.850 sum -2.092 16.475 -9.800 19.283 Atomic orbital electron populations 1.22868 0.80537 1.02838 1.00155 1.86228 1.19258 1.26366 1.89995 1.17924 0.89337 0.84402 1.08573 1.20644 0.98094 0.90765 1.05613 1.18060 0.92887 0.91331 1.14560 1.22500 0.92770 0.90570 0.91074 1.21073 1.05083 1.01907 0.98567 1.20270 0.80858 0.82564 0.82523 1.91099 1.54302 1.23068 1.68450 1.86252 1.56747 1.39627 1.42997 1.22091 0.94518 0.95144 0.90479 1.19847 0.78440 0.90370 0.79196 1.90738 1.51466 1.31934 1.65256 1.48393 1.44231 1.10452 1.32742 1.22199 0.95934 0.87721 0.97297 1.22638 1.00092 0.96200 0.97982 1.22813 0.96600 0.96065 1.01776 1.22247 0.95197 0.89468 0.94586 1.20519 0.91915 0.96670 0.94638 1.20716 1.00347 0.90789 1.12094 1.18815 0.88255 0.87546 0.95688 1.83987 1.19579 1.25742 1.76286 1.21442 0.78613 0.94857 1.51565 0.88838 1.25348 1.00592 0.94194 0.96408 1.70047 1.36348 0.97694 1.44330 0.85698 0.80376 0.78517 0.78773 1.19753 1.20147 1.19088 0.93658 0.93682 0.89161 0.86308 0.84898 0.84594 0.88463 0.88605 0.90634 0.90754 0.90255 0.89566 0.89561 0.90360 0.91246 0.90183 0.88225 0.84960 0.91833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 9.81 101.05 0.99 1.48 16 2 O -0.30 -6.73 10.28 -34.19 -0.35 -7.08 16 3 C 0.04 0.95 6.70 -39.12 -0.26 0.69 16 4 C -0.13 -2.44 8.78 -38.98 -0.34 -2.78 16 5 C -0.17 -2.97 4.36 -105.04 -0.46 -3.42 16 6 C 0.05 0.67 9.78 -37.17 -0.36 0.30 16 7 C -0.25 -3.32 9.86 -39.33 -0.39 -3.71 16 8 C 0.49 7.82 6.86 32.08 0.22 8.04 16 9 O -0.48 -9.01 12.00 -19.38 -0.23 -9.24 16 10 O -0.34 -5.23 9.64 -47.91 -0.46 -5.69 16 11 C 0.06 0.73 5.05 36.00 0.18 0.91 16 12 C 0.53 7.07 7.93 -10.99 -0.09 6.98 16 13 O -0.52 -8.75 16.75 -14.35 -0.24 -9.00 16 14 N -0.62 -6.22 3.33 -170.52 -0.57 -6.79 16 15 C 0.09 0.67 6.48 -3.07 -0.02 0.65 16 16 C -0.13 -0.68 6.95 -24.90 -0.17 -0.85 16 17 C -0.13 -0.71 7.08 -24.58 -0.17 -0.88 16 18 C 0.11 0.85 6.91 -2.52 -0.02 0.84 16 19 C -0.02 -0.37 6.72 -39.12 -0.26 -0.63 16 20 C -0.22 -4.92 9.14 -39.49 -0.36 -5.28 16 21 C 0.15 3.84 6.67 -38.75 -0.26 3.58 16 22 O -0.15 -4.50 9.52 -13.91 -0.13 -4.64 16 23 C -0.39 -10.88 9.48 30.91 0.29 -10.58 16 24 H 0.09 2.40 5.19 -52.49 -0.27 2.13 16 25 C 0.04 1.10 5.49 -17.51 -0.10 1.00 16 26 N -0.85 -24.92 13.67 55.48 0.76 -24.16 16 27 Si 0.94 20.22 29.55 -169.99 -5.02 15.19 16 28 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 29 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 30 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 31 H 0.04 0.59 7.66 -51.93 -0.40 0.20 16 32 H 0.04 0.62 7.66 -51.93 -0.40 0.22 16 33 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.12 1.80 6.28 -52.49 -0.33 1.47 16 35 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 36 H 0.14 1.47 8.06 -52.49 -0.42 1.05 16 37 H 0.10 1.19 8.13 -51.93 -0.42 0.77 16 38 H 0.10 1.14 8.13 -51.93 -0.42 0.72 16 39 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 44 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 45 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.08 0.71 8.03 -51.93 -0.42 0.29 16 47 H 0.10 1.77 7.32 -52.48 -0.38 1.38 16 48 H 0.13 2.92 5.62 -52.49 -0.29 2.63 16 49 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 413.67 15.07 6.23 6.23 Total: -1.00 -36.82 413.67 -8.29 -45.12 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -6.70 Total: 3.73 kcal Atomic # 6 Polarization: -2.11 SS G_CDS: -1.58 Total: -3.69 kcal Atomic # 7 Polarization: -31.14 SS G_CDS: 0.19 Total: -30.95 kcal Atomic # 8 Polarization: -34.23 SS G_CDS: -1.42 Total: -35.64 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -36.82 -8.29 -45.12 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006497894.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.882 kcal (2) G-P(sol) polarization free energy of solvation -36.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds