Wall clock time and date at job start Tue Mar 31 2020 05:00:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35981 * 117.00041 * 2 1 4 4 C 1.38545 * 120.07796 * 0.02562 * 3 2 1 5 5 C 1.38243 * 120.01189 * 180.02562 * 4 3 2 6 6 C 1.38275 * 120.18212 * 359.97438 * 5 4 3 7 7 C 1.38205 * 120.16395 * 359.97438 * 6 5 4 8 8 C 1.38720 * 119.97946 * 0.02562 * 7 6 5 9 9 N 1.40122 * 120.08841 * 179.97438 * 8 7 6 10 10 C 1.46505 * 119.99844 * 269.99938 * 9 8 7 11 11 C 1.50693 * 109.47318 * 89.99679 * 10 9 8 12 12 H 1.07996 * 120.00278 * 0.02562 * 11 10 9 13 13 C 1.37879 * 120.00262 * 180.02562 * 11 10 9 14 14 N 1.31514 * 120.00361 * 180.02562 * 13 11 10 15 15 Si 1.86798 * 119.99787 * 359.97438 * 13 11 10 16 16 H 1.48502 * 109.46932 * 90.00676 * 15 13 11 17 17 H 1.48500 * 109.47428 * 210.00534 * 15 13 11 18 18 H 1.48498 * 109.47612 * 330.00752 * 15 13 11 19 19 C 1.34779 * 120.00558 * 89.99532 * 9 8 7 20 20 O 1.21288 * 119.99718 * 0.02562 * 19 9 8 21 21 C 1.50702 * 119.99981 * 180.02562 * 19 9 8 22 22 S 1.81403 * 109.46871 * 180.02562 * 21 19 9 23 23 C 1.76197 * 102.99832 * 179.97438 * 22 21 19 24 24 C 1.38883 * 120.08684 * 359.97438 * 23 22 21 25 25 C 1.38137 * 119.94729 * 180.02562 * 24 23 22 26 26 C 1.38287 * 120.11079 * 0.02562 * 25 24 23 27 27 C 1.38307 * 120.17546 * 0.02562 * 26 25 24 28 28 C 1.38261 * 120.05153 * 359.67588 * 27 26 25 29 29 F 1.35106 * 120.05635 * 180.29719 * 28 27 26 30 30 H 1.08997 * 109.47288 * 299.99864 * 1 2 3 31 31 H 1.09002 * 109.47604 * 59.99722 * 1 2 3 32 32 H 1.09008 * 109.47031 * 179.97438 * 1 2 3 33 33 H 1.07996 * 119.99803 * 0.02562 * 4 3 2 34 34 H 1.08006 * 119.91386 * 180.02562 * 5 4 3 35 35 H 1.08002 * 119.92400 * 180.02562 * 6 5 4 36 36 H 1.07992 * 120.00892 * 179.75001 * 7 6 5 37 37 H 1.09000 * 109.47384 * 210.00361 * 10 9 8 38 38 H 1.09003 * 109.46628 * 329.99724 * 10 9 8 39 39 H 0.96996 * 119.99906 * 179.97438 * 14 13 11 40 40 H 1.08996 * 109.46817 * 299.99953 * 21 19 9 41 41 H 1.08993 * 109.47378 * 60.00223 * 21 19 9 42 42 H 1.08007 * 120.03144 * 359.97438 * 24 23 22 43 43 H 1.07998 * 119.94321 * 179.97438 * 25 24 23 44 44 H 1.07998 * 119.91322 * 179.97438 * 26 25 24 45 45 H 1.08000 * 119.97350 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2933 2.3746 0.0005 5 6 1.9223 3.6056 0.0000 6 6 3.3030 3.6807 -0.0005 7 6 4.0614 2.5253 0.0000 8 6 3.4372 1.2865 0.0005 9 7 4.2039 0.1136 0.0005 10 6 4.6042 -0.4998 -1.2683 11 6 5.9306 0.0672 -1.7040 12 1 6.4262 0.8099 -1.0965 13 6 6.5116 -0.3621 -2.8784 14 7 7.6695 0.1324 -3.2584 15 14 5.6548 -1.6473 -3.9289 16 1 4.7637 -0.9731 -4.9070 17 1 6.6709 -2.4497 -4.6563 18 1 4.8487 -2.5407 -3.0588 19 6 4.5732 -0.4502 1.1677 20 8 4.2415 0.0574 2.2181 21 6 5.3982 -1.7113 1.1675 22 16 5.7291 -2.2176 2.8778 23 6 6.6869 -3.6830 2.6790 24 6 6.9908 -4.1490 1.4065 25 6 7.7415 -5.2985 1.2540 26 6 8.1905 -5.9865 2.3664 27 6 7.8899 -5.5274 3.6359 28 6 7.1442 -4.3742 3.7966 29 9 6.8555 -3.9224 5.0367 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 0.2148 2.3195 0.0014 34 1 1.3338 4.5112 0.0008 35 1 3.7901 4.6447 -0.0005 36 1 5.1396 2.5870 -0.0045 37 1 4.6952 -1.5781 -1.1378 38 1 3.8514 -0.2880 -2.0276 39 1 8.0783 -0.1700 -4.0844 40 1 4.8522 -2.5026 0.6539 41 1 6.3417 -1.5282 0.6535 42 1 6.6398 -3.6134 0.5367 43 1 7.9774 -5.6610 0.2644 44 1 8.7769 -6.8850 2.2435 45 1 8.2419 -6.0675 4.5024 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006509567.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:27 Heat of formation + Delta-G solvation = -45.550142 kcal Electronic energy + Delta-G solvation = -31415.479669 eV Core-core repulsion = 27018.916074 eV Total energy + Delta-G solvation = -4396.563595 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 375.109 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -48.83563 -40.37437 -38.84545 -38.77847 -37.06984 -35.22003 -32.70290 -31.60247 -30.73007 -30.41316 -29.91369 -28.88433 -27.76521 -26.97356 -23.17159 -22.97941 -22.66856 -22.26948 -21.86564 -19.43500 -18.14331 -17.67952 -17.17778 -16.96053 -16.79331 -16.33395 -16.06032 -15.93959 -15.62284 -15.47259 -15.09815 -14.93387 -14.61062 -14.27261 -14.12441 -13.90142 -13.59680 -13.44691 -13.16534 -12.98575 -12.69777 -12.59683 -12.35613 -12.24188 -12.12223 -12.03217 -11.97505 -11.53327 -11.22010 -11.15482 -10.95431 -10.94703 -10.81273 -10.38851 -10.01080 -9.85607 -9.72583 -9.48202 -8.89478 -8.82533 -8.58629 -8.10517 -7.90745 -7.25827 -6.31464 -4.34426 1.01576 1.12241 1.40880 1.59212 1.70233 2.48620 3.04406 3.09624 3.16825 3.19569 3.42753 3.48112 3.61298 4.00270 4.16999 4.19542 4.66271 4.85875 4.92306 4.96495 4.99807 5.12071 5.17135 5.18437 5.21401 5.21948 5.29421 5.42663 5.50144 5.56612 5.64717 5.70087 5.85006 5.91377 5.96414 6.03597 6.10389 6.32456 6.34156 6.44089 6.50040 6.65358 6.76062 6.77355 6.96649 7.21048 7.32445 7.61935 7.87716 8.24999 8.65228 8.74954 9.26591 10.80547 Molecular weight = 375.11amu Principal moments of inertia in cm(-1) A = 0.007980 B = 0.003476 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3507.980385 B = 8053.372520 C =10118.262923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.308 6.308 3 C 0.129 3.871 4 C -0.210 4.210 5 C -0.085 4.085 6 C -0.153 4.153 7 C -0.057 4.057 8 C 0.132 3.868 9 N -0.539 5.539 10 C 0.213 3.787 11 C -0.545 4.545 12 H 0.081 0.919 13 C 0.081 3.919 14 N -0.885 5.885 15 Si 0.867 3.133 16 H -0.272 1.272 17 H -0.281 1.281 18 H -0.264 1.264 19 C 0.547 3.453 20 O -0.538 6.538 21 C -0.143 4.143 22 S -0.022 6.022 23 C -0.132 4.132 24 C -0.108 4.108 25 C -0.107 4.107 26 C -0.105 4.105 27 C -0.138 4.138 28 C 0.110 3.890 29 F -0.132 7.132 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.096 0.904 33 H 0.126 0.874 34 H 0.122 0.878 35 H 0.125 0.875 36 H 0.136 0.864 37 H 0.036 0.964 38 H 0.033 0.967 39 H 0.268 0.732 40 H 0.115 0.885 41 H 0.135 0.865 42 H 0.138 0.862 43 H 0.132 0.868 44 H 0.132 0.868 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.220 -6.190 6.486 11.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.221 6.221 3 C 0.082 3.918 4 C -0.230 4.230 5 C -0.103 4.103 6 C -0.171 4.171 7 C -0.076 4.076 8 C 0.041 3.959 9 N -0.268 5.268 10 C 0.093 3.907 11 C -0.584 4.584 12 H 0.099 0.901 13 C -0.124 4.124 14 N -0.522 5.522 15 Si 0.693 3.307 16 H -0.198 1.198 17 H -0.207 1.207 18 H -0.188 1.188 19 C 0.334 3.666 20 O -0.416 6.416 21 C -0.293 4.293 22 S 0.224 5.776 23 C -0.246 4.246 24 C -0.132 4.132 25 C -0.127 4.127 26 C -0.126 4.126 27 C -0.158 4.158 28 C 0.084 3.916 29 F -0.110 7.110 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.114 0.886 33 H 0.144 0.856 34 H 0.140 0.860 35 H 0.143 0.857 36 H 0.154 0.846 37 H 0.054 0.946 38 H 0.051 0.949 39 H 0.078 0.922 40 H 0.133 0.867 41 H 0.153 0.847 42 H 0.156 0.844 43 H 0.150 0.850 44 H 0.150 0.850 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -7.620 -5.453 7.893 12.251 hybrid contribution -0.110 -1.100 -2.018 2.301 sum -7.729 -6.554 5.875 11.714 Atomic orbital electron populations 1.23014 0.79076 1.03609 1.00997 1.86156 1.20711 1.26683 1.88528 1.19299 0.91470 0.84531 0.96515 1.21013 0.99548 0.92062 1.10335 1.20878 0.94644 0.96647 0.98132 1.20944 0.93670 0.98128 1.04403 1.21323 1.00924 0.90510 0.94841 1.16766 0.86199 0.87017 1.05902 1.45141 1.50689 1.23615 1.07307 1.19932 0.96757 0.93604 0.80452 1.21332 1.03095 1.25830 1.08111 0.90060 1.24825 0.94589 0.96003 0.96939 1.69876 1.16407 1.42603 1.23321 0.86997 0.79928 0.82320 0.81473 1.19766 1.20702 1.18817 1.19345 0.79324 0.84401 0.83523 1.90688 1.56053 1.64066 1.30792 1.23894 1.06247 1.00535 0.98655 1.86182 1.61270 1.22200 1.07983 1.22279 1.04819 1.01825 0.95720 1.21253 0.99291 0.97410 0.95217 1.21165 0.97331 0.94870 0.99351 1.20995 1.00014 1.00178 0.91432 1.21027 1.00061 0.95587 0.99122 1.17060 1.00791 0.95165 0.78622 1.91513 1.91757 1.88701 1.39043 0.92875 0.92861 0.88562 0.85581 0.85981 0.85697 0.84597 0.94634 0.94872 0.92212 0.86733 0.84683 0.84425 0.84987 0.85021 0.84551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 9.81 101.05 0.99 1.32 16 2 O -0.31 -5.27 10.24 -19.68 -0.20 -5.47 16 3 C 0.13 2.31 6.70 -39.07 -0.26 2.04 16 4 C -0.21 -3.08 9.04 -39.47 -0.36 -3.44 16 5 C -0.08 -1.17 10.04 -39.57 -0.40 -1.56 16 6 C -0.15 -2.34 10.04 -39.58 -0.40 -2.73 16 7 C -0.06 -1.06 9.96 -39.42 -0.39 -1.46 16 8 C 0.13 2.66 4.48 -83.50 -0.37 2.29 16 9 N -0.54 -11.36 2.24 -114.59 -0.26 -11.62 16 10 C 0.21 4.65 4.03 -5.19 -0.02 4.63 16 11 C -0.55 -13.71 9.83 -34.44 -0.34 -14.05 16 12 H 0.08 2.27 8.06 -52.49 -0.42 1.84 16 13 C 0.08 2.09 5.47 -17.82 -0.10 1.99 16 14 N -0.89 -24.67 13.96 55.43 0.77 -23.90 16 15 Si 0.87 19.06 27.47 -169.99 -4.67 14.39 16 16 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 17 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 18 H -0.26 -5.41 6.54 56.52 0.37 -5.04 16 19 C 0.55 11.45 7.66 -10.98 -0.08 11.37 16 20 O -0.54 -12.41 15.84 5.55 0.09 -12.32 16 21 C -0.14 -2.56 3.37 36.01 0.12 -2.44 16 22 S -0.02 -0.38 20.67 -107.50 -2.22 -2.60 16 23 C -0.13 -2.03 6.11 -39.01 -0.24 -2.27 16 24 C -0.11 -1.49 9.36 -39.38 -0.37 -1.86 16 25 C -0.11 -1.23 10.04 -39.60 -0.40 -1.63 16 26 C -0.10 -1.07 10.04 -39.54 -0.40 -1.47 16 27 C -0.14 -1.56 10.02 -39.55 -0.40 -1.96 16 28 C 0.11 1.57 7.28 -39.24 -0.29 1.29 16 29 F -0.13 -2.02 16.76 2.25 0.04 -1.98 16 30 H 0.05 0.54 7.66 -51.93 -0.40 0.15 16 31 H 0.05 0.53 7.66 -51.93 -0.40 0.13 16 32 H 0.10 0.91 8.14 -51.92 -0.42 0.48 16 33 H 0.13 1.45 6.30 -52.49 -0.33 1.12 16 34 H 0.12 1.26 8.06 -52.48 -0.42 0.84 16 35 H 0.13 1.58 8.06 -52.49 -0.42 1.15 16 36 H 0.14 2.65 8.06 -52.49 -0.42 2.23 16 37 H 0.04 0.73 5.50 -51.93 -0.29 0.45 16 38 H 0.03 0.74 7.48 -51.93 -0.39 0.35 16 39 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 40 H 0.11 1.83 7.00 -51.93 -0.36 1.47 16 41 H 0.14 2.47 7.61 -51.93 -0.40 2.08 16 42 H 0.14 1.90 5.88 -52.48 -0.31 1.59 16 43 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 44 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 45 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 LS Contribution 399.16 15.07 6.02 6.02 Total: -1.00 -31.67 399.16 -9.54 -41.21 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -5.42 Total: 6.24 kcal Atomic # 6 Polarization: -6.27 SS G_CDS: -3.69 Total: -9.97 kcal Atomic # 7 Polarization: -36.03 SS G_CDS: 0.52 Total: -35.52 kcal Atomic # 8 Polarization: -17.68 SS G_CDS: -0.11 Total: -17.79 kcal Atomic # 9 Polarization: -2.02 SS G_CDS: 0.04 Total: -1.98 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -4.67 Total: 14.39 kcal Atomic # 16 Polarization: -0.38 SS G_CDS: -2.22 Total: -2.60 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -31.67 -9.54 -41.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006509567.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.339 kcal (2) G-P(sol) polarization free energy of solvation -31.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds