Wall clock time and date at job start Tue Mar 31 2020 05:56:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.29876 * 125.73639 * 2 1 4 4 N 1.39769 * 109.44528 * 180.14970 * 3 2 1 5 5 C 1.46501 * 125.94437 * 179.87695 * 4 3 2 6 6 C 1.50706 * 109.46707 * 269.68811 * 5 4 3 7 7 C 1.38244 * 119.98773 * 89.99870 * 6 5 4 8 8 C 1.38217 * 120.01084 * 180.02562 * 7 6 5 9 9 C 1.38351 * 119.98541 * 0.25893 * 8 7 6 10 10 Cl 1.73604 * 120.00786 * 179.69323 * 9 8 7 11 11 C 1.38349 * 119.97465 * 359.42086 * 9 8 7 12 12 C 1.38212 * 119.98525 * 0.59771 * 11 9 8 13 13 C 1.36706 * 108.11281 * 359.60701 * 4 3 2 14 14 S 1.75892 * 142.80195 * 180.22712 * 13 4 3 15 15 C 1.75577 * 91.47744 * 180.02562 * 14 13 4 16 16 C 1.46343 * 124.79310 * 180.02562 * 15 14 13 17 17 O 1.21668 * 120.00007 * 179.97438 * 16 15 14 18 18 O 1.34904 * 119.99804 * 359.96872 * 16 15 14 19 19 C 1.34857 * 116.99703 * 180.02562 * 18 16 15 20 20 H 1.08007 * 120.00259 * 359.97438 * 19 18 16 21 21 C 1.38780 * 119.99910 * 180.02562 * 19 18 16 22 22 N 1.31444 * 119.99996 * 179.97438 * 21 19 18 23 23 Si 1.86799 * 119.99910 * 0.02562 * 21 19 18 24 24 H 1.48496 * 109.47319 * 90.00014 * 23 21 19 25 25 H 1.48502 * 109.46725 * 210.00007 * 23 21 19 26 26 H 1.48500 * 109.47123 * 329.99877 * 23 21 19 27 27 C 1.34288 * 110.41154 * 359.97438 * 15 14 13 28 28 C 1.38580 * 107.41101 * 0.22911 * 13 4 3 29 29 H 1.08994 * 109.46603 * 270.27962 * 1 2 3 30 30 H 1.09003 * 109.46916 * 30.28367 * 1 2 3 31 31 H 1.08996 * 109.46878 * 150.27932 * 1 2 3 32 32 H 1.08992 * 109.47520 * 149.68776 * 5 4 3 33 33 H 1.09001 * 109.47422 * 29.68206 * 5 4 3 34 34 H 1.07999 * 119.99331 * 0.02562 * 7 6 5 35 35 H 1.08002 * 120.00169 * 179.97438 * 8 7 6 36 36 H 1.08008 * 120.00633 * 180.29755 * 11 9 8 37 37 H 1.08000 * 119.99226 * 179.67843 * 12 11 9 38 38 H 0.96994 * 119.99928 * 179.97438 * 22 21 19 39 39 H 1.07998 * 122.35178 * 179.97438 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2656 1.0542 0.0000 4 7 3.6072 0.6621 -0.0034 5 6 4.7653 1.5594 -0.0071 6 6 5.1632 1.8601 -1.4292 7 6 4.6123 2.9445 -2.0863 8 6 4.9765 3.2204 -3.3907 9 6 5.8885 2.4080 -4.0406 10 17 6.3404 2.7493 -5.6817 11 6 6.4445 1.3268 -3.3803 12 6 6.0792 1.0516 -2.0760 13 6 3.6507 -0.7042 0.0033 14 16 4.7581 -2.0707 0.0099 15 6 3.4229 -3.2110 0.0149 16 6 3.5684 -4.6671 0.0222 17 8 2.5804 -5.3772 0.0257 18 8 4.7980 -5.2221 0.0250 19 6 4.8616 -6.5692 0.0313 20 1 3.9528 -7.1527 0.0343 21 6 6.0949 -7.2055 0.0350 22 7 6.1569 -8.5185 0.0416 23 14 7.6667 -6.1962 0.0321 24 1 8.0821 -5.9228 1.4313 25 1 8.7389 -6.9521 -0.6639 26 1 7.4287 -4.9115 -0.6736 27 6 2.2495 -2.5581 0.0121 28 6 2.3422 -1.1607 0.0056 29 1 -0.3632 0.0050 1.0276 30 1 -0.3633 0.8875 -0.5183 31 1 -0.3633 -0.8925 -0.5095 32 1 5.5973 1.0809 0.5095 33 1 4.5072 2.4880 0.5020 34 1 3.8973 3.5761 -1.5802 35 1 4.5458 4.0674 -3.9041 36 1 7.1601 0.6950 -3.8856 37 1 6.5092 0.2046 -1.5622 38 1 7.0189 -8.9633 0.0439 39 1 1.3009 -3.0744 0.0139 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006550054.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:56 Heat of formation + Delta-G solvation = 42.764364 kcal Electronic energy + Delta-G solvation = -27745.735653 eV Core-core repulsion = 23580.079032 eV Total energy + Delta-G solvation = -4165.656621 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 376.043 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.44121 -39.78615 -39.18901 -36.97563 -36.14402 -35.06662 -34.21821 -32.40436 -31.80950 -31.53504 -29.17645 -28.79043 -26.33265 -25.32481 -23.60413 -23.28895 -22.07029 -21.77751 -20.01464 -19.07296 -18.12692 -18.03319 -17.47656 -16.55641 -16.25129 -15.99866 -15.57220 -15.23049 -15.03187 -14.77475 -14.55165 -14.11187 -13.99513 -13.95562 -13.82749 -13.46860 -13.16833 -13.06260 -12.57088 -12.51073 -12.33346 -12.26609 -11.94136 -11.85931 -11.75157 -11.62928 -11.22440 -11.17675 -10.97300 -10.85780 -10.57577 -10.46343 -9.82324 -9.79604 -9.48419 -9.39081 -9.14164 -8.76899 -8.39411 -7.78567 -6.46586 -4.18407 0.49750 0.85142 0.90480 1.00426 1.62138 1.71794 1.98677 2.34539 2.81891 3.15239 3.18518 3.23721 3.30175 3.76879 3.92900 4.04585 4.15667 4.17250 4.37031 4.44179 4.60444 4.76105 4.79591 4.90020 4.96785 5.05005 5.06884 5.21143 5.44202 5.47205 5.49260 5.62079 5.70228 5.72734 5.77986 5.87911 5.99615 6.19198 6.30087 6.36652 6.53278 6.57646 7.43364 7.60510 7.94637 8.50520 8.90148 9.55009 10.61125 Molecular weight = 376.04amu Principal moments of inertia in cm(-1) A = 0.008226 B = 0.002900 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3403.134477 B = 9651.884855 C =12034.282848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.130 3.870 3 N -0.267 5.267 4 N -0.351 5.351 5 C 0.179 3.821 6 C -0.115 4.115 7 C -0.077 4.077 8 C -0.115 4.115 9 C -0.024 4.024 10 Cl -0.068 7.068 11 C -0.110 4.110 12 C -0.084 4.084 13 C 0.013 3.987 14 S 0.213 5.787 15 C -0.205 4.205 16 C 0.478 3.522 17 O -0.525 6.525 18 O -0.244 6.244 19 C -0.373 4.373 20 H 0.113 0.887 21 C 0.067 3.933 22 N -0.866 5.866 23 Si 0.899 3.101 24 H -0.270 1.270 25 H -0.279 1.279 26 H -0.257 1.257 27 C -0.007 4.007 28 C -0.216 4.216 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.103 0.897 33 H 0.110 0.890 34 H 0.135 0.865 35 H 0.135 0.865 36 H 0.139 0.861 37 H 0.135 0.865 38 H 0.282 0.718 39 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.284 26.883 -3.550 27.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.044 4.044 3 N -0.084 5.084 4 N -0.138 5.138 5 C 0.059 3.941 6 C -0.117 4.117 7 C -0.096 4.096 8 C -0.133 4.133 9 C -0.051 4.051 10 Cl -0.039 7.039 11 C -0.129 4.129 12 C -0.103 4.103 13 C -0.224 4.224 14 S 0.467 5.533 15 C -0.323 4.323 16 C 0.324 3.676 17 O -0.422 6.422 18 O -0.152 6.152 19 C -0.449 4.449 20 H 0.131 0.869 21 C -0.137 4.137 22 N -0.505 5.505 23 Si 0.723 3.277 24 H -0.195 1.195 25 H -0.204 1.204 26 H -0.181 1.181 27 C -0.039 4.039 28 C -0.232 4.232 29 H 0.101 0.899 30 H 0.095 0.905 31 H 0.102 0.898 32 H 0.121 0.879 33 H 0.128 0.872 34 H 0.153 0.847 35 H 0.153 0.847 36 H 0.156 0.844 37 H 0.153 0.847 38 H 0.092 0.908 39 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 0.351 27.756 -3.676 28.000 hybrid contribution -0.582 -0.526 -0.226 0.817 sum -0.231 27.229 -3.902 27.509 Atomic orbital electron populations 1.20281 0.85764 1.03853 1.03524 1.22321 0.96651 0.88003 0.97427 1.76618 0.85801 1.22677 1.23323 1.47798 1.04282 1.00312 1.61391 1.20565 0.85007 0.94917 0.93649 1.20153 0.98283 0.96639 0.96623 1.21031 0.98107 0.96654 0.93805 1.21064 0.97449 0.99896 0.94923 1.21040 0.99468 0.97835 0.86775 1.98386 1.91716 1.94763 1.19076 1.21103 1.00531 0.96505 0.94715 1.21129 0.96453 0.98495 0.94201 1.24865 1.00967 0.90298 1.06303 1.84308 1.03608 0.88484 1.76890 1.22659 0.95954 0.95204 1.18493 1.18960 0.82954 0.85688 0.79997 1.90744 1.39096 1.61883 1.50449 1.83561 1.29235 1.25566 1.76854 1.20704 0.96903 0.76067 1.51199 0.86906 1.24545 0.98402 0.95294 0.95493 1.69595 1.27076 1.07283 1.46510 0.86301 0.81323 0.80799 0.79233 1.19533 1.20446 1.18103 1.19381 0.98603 0.90398 0.95508 1.18831 0.91347 0.93989 1.19003 0.89896 0.90496 0.89778 0.87851 0.87181 0.84668 0.84662 0.84357 0.84743 0.90796 0.82795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.67 10.46 36.01 0.38 -0.29 16 2 C 0.13 1.67 7.28 -81.57 -0.59 1.08 16 3 N -0.27 -3.44 12.44 34.16 0.42 -3.02 16 4 N -0.35 -4.33 3.63 -60.42 -0.22 -4.55 16 5 C 0.18 1.55 6.57 -5.19 -0.03 1.52 16 6 C -0.12 -1.03 5.46 -104.62 -0.57 -1.60 16 7 C -0.08 -0.64 9.70 -39.59 -0.38 -1.02 16 8 C -0.11 -0.95 9.83 -39.55 -0.39 -1.34 16 9 C -0.02 -0.22 6.32 -39.50 -0.25 -0.47 16 10 Cl -0.07 -0.61 28.96 -51.86 -1.50 -2.11 16 11 C -0.11 -1.02 9.83 -39.55 -0.39 -1.41 16 12 C -0.08 -0.78 9.70 -39.59 -0.38 -1.16 16 13 C 0.01 0.18 8.01 -15.25 -0.12 0.06 16 14 S 0.21 3.36 23.06 -107.50 -2.48 0.88 16 15 C -0.21 -3.94 6.32 -37.72 -0.24 -4.18 16 16 C 0.48 11.59 7.86 33.99 0.27 11.86 16 17 O -0.53 -14.07 15.99 -19.40 -0.31 -14.38 16 18 O -0.24 -6.41 8.39 -22.12 -0.19 -6.59 16 19 C -0.37 -10.93 10.11 30.93 0.31 -10.62 16 20 H 0.11 3.62 7.09 -52.48 -0.37 3.25 16 21 C 0.07 1.89 5.49 -17.52 -0.10 1.80 16 22 N -0.87 -25.11 13.96 55.49 0.77 -24.34 16 23 Si 0.90 20.78 28.62 -169.99 -4.86 15.92 16 24 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 25 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 26 H -0.26 -5.76 7.11 56.52 0.40 -5.35 16 27 C -0.01 -0.11 9.85 -40.30 -0.40 -0.51 16 28 C -0.22 -3.22 6.55 -107.25 -0.70 -3.93 16 29 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.10 0.74 8.08 -51.93 -0.42 0.32 16 33 H 0.11 0.74 8.09 -51.93 -0.42 0.32 16 34 H 0.14 0.92 8.06 -52.49 -0.42 0.49 16 35 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 36 H 0.14 1.12 8.06 -52.48 -0.42 0.70 16 37 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 38 H 0.28 7.43 8.31 -40.82 -0.34 7.09 16 39 H 0.15 2.40 7.97 -52.49 -0.42 1.99 16 LS Contribution 381.91 15.07 5.76 5.76 Total: -1.00 -33.58 381.91 -9.93 -43.50 By element: Atomic # 1 Polarization: 2.89 SS G_CDS: -3.72 Total: -0.84 kcal Atomic # 6 Polarization: -6.62 SS G_CDS: -3.59 Total: -10.22 kcal Atomic # 7 Polarization: -32.89 SS G_CDS: 0.98 Total: -31.91 kcal Atomic # 8 Polarization: -20.48 SS G_CDS: -0.50 Total: -20.98 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -4.86 Total: 15.92 kcal Atomic # 16 Polarization: 3.36 SS G_CDS: -2.48 Total: 0.88 kcal Atomic # 17 Polarization: -0.61 SS G_CDS: -1.50 Total: -2.11 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.58 -9.93 -43.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006550054.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.265 kcal (2) G-P(sol) polarization free energy of solvation -33.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.501 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds