Wall clock time and date at job start Tue Mar 31 2020 06:23:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00115 * 2 1 4 4 H 1.48499 * 109.47392 * 239.99947 * 3 2 1 5 5 H 1.48494 * 109.47343 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47026 * 120.00252 * 3 2 1 7 7 C 1.37881 * 119.99998 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00080 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00158 * 359.97438 * 7 2 1 10 10 N 1.46489 * 109.47580 * 180.02562 * 9 7 2 11 11 C 1.34773 * 120.00449 * 83.54948 * 10 9 7 12 12 O 1.21506 * 120.00486 * 183.22203 * 11 10 9 13 13 C 1.48318 * 119.99901 * 3.22005 * 11 10 9 14 14 N 1.31911 * 127.00964 * 355.01747 * 13 11 10 15 15 O 1.21799 * 111.88354 * 179.77314 * 14 13 11 16 16 C 1.32331 * 111.39339 * 0.10879 * 15 14 13 17 17 C 1.38132 * 106.53671 * 359.79820 * 16 15 14 18 18 C 1.49801 * 121.85721 * 180.37883 * 17 16 15 19 19 O 1.43140 * 109.11106 * 334.18885 * 18 17 16 20 20 C 1.35479 * 120.48140 * 41.91794 * 19 18 17 21 21 C 1.38586 * 120.50343 * 149.19608 * 20 19 18 22 22 C 1.38147 * 120.17649 * 177.78699 * 21 20 19 23 23 C 1.38448 * 120.78061 * 359.97438 * 22 21 20 24 24 C 1.38193 * 120.03150 * 0.39471 * 23 22 21 25 25 C 1.38633 * 119.56899 * 359.93697 * 24 23 22 26 26 C 1.39843 * 120.00030 * 263.55250 * 10 9 7 27 27 C 1.38888 * 120.06957 * 352.50706 * 26 10 9 28 28 C 1.38105 * 119.92859 * 179.81497 * 27 26 10 29 29 C 1.38291 * 120.07026 * 0.44233 * 28 27 26 30 30 C 1.38295 * 120.14286 * 359.78990 * 29 28 27 31 31 C 1.38102 * 120.07196 * 359.97438 * 30 29 28 32 32 H 0.97003 * 119.99350 * 0.02562 * 1 2 3 33 33 H 1.09007 * 109.47225 * 59.99822 * 9 7 2 34 34 H 1.09001 * 109.47043 * 300.00434 * 9 7 2 35 35 H 1.09005 * 109.52843 * 214.30015 * 18 17 16 36 36 H 1.08993 * 109.59726 * 94.11890 * 18 17 16 37 37 H 1.07994 * 119.90716 * 357.76525 * 21 20 19 38 38 H 1.08000 * 119.60574 * 180.02562 * 22 21 20 39 39 H 1.08009 * 119.98595 * 180.41241 * 23 22 21 40 40 H 1.08000 * 120.22117 * 179.97438 * 24 23 22 41 41 H 1.07999 * 120.04112 * 0.02764 * 27 26 10 42 42 H 1.07996 * 119.97073 * 180.23337 * 28 27 26 43 43 H 1.08001 * 119.92704 * 179.76874 * 29 28 27 44 44 H 1.07994 * 119.95798 * 179.97438 * 30 29 28 45 45 H 1.08001 * 120.03426 * 179.97438 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2843 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 2.7406 -4.0397 1.1592 12 8 3.5739 -4.9240 1.1534 13 6 2.3150 -3.4303 2.4427 14 7 1.4963 -2.4086 2.6037 15 8 1.3337 -2.1382 3.7801 16 6 2.0291 -2.9481 4.5621 17 6 2.6946 -3.8249 3.7277 18 6 3.5844 -4.9046 4.2629 19 8 4.0808 -4.5095 5.5461 20 6 3.2626 -3.9114 6.4451 21 6 3.4642 -4.0863 7.8050 22 6 2.6541 -3.4368 8.7163 23 6 1.6333 -2.6044 8.2897 24 6 1.4093 -2.4213 6.9384 25 6 2.2131 -3.0746 6.0170 26 6 2.5539 -4.2325 -1.2039 27 6 1.8887 -3.9012 -2.3773 28 6 2.2403 -4.5124 -3.5648 29 6 3.2473 -5.4600 -3.5848 30 6 3.9083 -5.7956 -2.4174 31 6 3.5649 -5.1846 -1.2274 32 1 -0.4849 0.8401 -0.0004 33 1 0.6240 -2.5567 -0.8903 34 1 0.6247 -2.5571 0.8897 35 1 4.4203 -5.0594 3.5807 36 1 3.0177 -5.8304 4.3608 37 1 4.2564 -4.7323 8.1532 38 1 2.8197 -3.5794 9.7739 39 1 1.0119 -2.0977 9.0134 40 1 0.6136 -1.7730 6.6022 41 1 1.0997 -3.1639 -2.3618 42 1 1.7261 -4.2525 -4.4782 43 1 3.5178 -5.9392 -4.5141 44 1 4.6940 -6.5364 -2.4364 45 1 4.0812 -5.4475 -0.3160 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006817342.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:05 Heat of formation + Delta-G solvation = 91.354366 kcal Electronic energy + Delta-G solvation = -33964.681505 eV Core-core repulsion = 29496.644978 eV Total energy + Delta-G solvation = -4468.036527 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 376.126 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -44.82512 -40.45221 -40.30743 -37.96494 -37.64418 -35.49307 -34.18604 -33.07804 -32.67799 -30.69005 -30.44222 -30.31176 -29.39988 -27.44299 -26.83543 -24.87073 -23.73831 -23.51778 -22.94332 -22.03349 -21.12879 -20.58825 -19.32515 -18.42141 -17.65016 -17.18290 -16.95325 -16.63025 -16.58095 -16.27002 -15.91270 -15.51728 -15.38431 -14.71579 -14.59814 -14.39432 -14.20980 -14.06914 -13.73538 -13.32269 -13.16303 -13.05502 -12.88638 -12.66322 -12.56765 -12.24862 -12.05165 -11.77709 -11.49730 -11.46398 -11.16330 -11.07391 -11.00333 -10.72920 -10.42232 -10.32880 -10.21837 -10.16299 -10.06139 -9.25791 -9.08666 -8.86573 -8.55378 -8.45075 -8.06188 -7.34989 -6.20241 -4.25388 0.48020 1.12986 1.35706 1.89932 1.92743 2.08113 2.79811 3.00286 3.23692 3.23991 3.27638 3.33515 3.49497 3.55538 4.17661 4.31776 4.34668 4.40666 4.45425 4.73896 4.83259 4.92050 5.07653 5.13624 5.15264 5.26798 5.28724 5.33565 5.37131 5.44391 5.59227 5.64176 5.72570 5.81300 5.92935 6.02533 6.04666 6.05532 6.14574 6.23767 6.40429 6.47891 6.67238 6.80720 6.90647 7.00825 7.12860 7.20638 7.22535 7.65748 7.70042 7.88451 7.94869 8.25581 8.49767 8.75634 9.39297 10.87565 Molecular weight = 376.13amu Principal moments of inertia in cm(-1) A = 0.008957 B = 0.003397 C = 0.002613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3125.152102 B = 8239.884080 C =10711.943114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.076 3.924 3 Si 0.894 3.106 4 H -0.275 1.275 5 H -0.284 1.284 6 H -0.276 1.276 7 C -0.528 4.528 8 H 0.056 0.944 9 C 0.218 3.782 10 N -0.516 5.516 11 C 0.600 3.400 12 O -0.530 6.530 13 C 0.001 3.999 14 N -0.256 5.256 15 O 0.152 5.848 16 C -0.001 4.001 17 C -0.210 4.210 18 C 0.157 3.843 19 O -0.314 6.314 20 C 0.154 3.846 21 C -0.147 4.147 22 C -0.076 4.076 23 C -0.149 4.149 24 C -0.058 4.058 25 C -0.082 4.082 26 C 0.167 3.833 27 C -0.144 4.144 28 C -0.103 4.103 29 C -0.157 4.157 30 C -0.107 4.107 31 C -0.176 4.176 32 H 0.266 0.734 33 H 0.050 0.950 34 H 0.068 0.932 35 H 0.133 0.867 36 H 0.081 0.919 37 H 0.138 0.862 38 H 0.132 0.868 39 H 0.132 0.868 40 H 0.138 0.862 41 H 0.136 0.864 42 H 0.119 0.881 43 H 0.113 0.887 44 H 0.117 0.883 45 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.859 -9.216 11.827 15.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.128 4.128 3 Si 0.721 3.279 4 H -0.201 1.201 5 H -0.209 1.209 6 H -0.202 1.202 7 C -0.567 4.567 8 H 0.074 0.926 9 C 0.099 3.901 10 N -0.234 5.234 11 C 0.389 3.611 12 O -0.410 6.410 13 C -0.155 4.155 14 N 0.046 4.954 15 O 0.076 5.924 16 C -0.067 4.067 17 C -0.216 4.216 18 C 0.082 3.918 19 O -0.228 6.228 20 C 0.108 3.892 21 C -0.165 4.165 22 C -0.094 4.094 23 C -0.167 4.167 24 C -0.077 4.077 25 C -0.085 4.085 26 C 0.071 3.929 27 C -0.164 4.164 28 C -0.122 4.122 29 C -0.176 4.176 30 C -0.126 4.126 31 C -0.195 4.195 32 H 0.076 0.924 33 H 0.067 0.933 34 H 0.085 0.915 35 H 0.151 0.849 36 H 0.099 0.901 37 H 0.155 0.845 38 H 0.150 0.850 39 H 0.150 0.850 40 H 0.156 0.844 41 H 0.154 0.846 42 H 0.137 0.863 43 H 0.131 0.869 44 H 0.135 0.865 45 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 2.612 -8.789 10.936 14.271 hybrid contribution 0.537 0.900 -0.140 1.057 sum 3.148 -7.889 10.795 13.737 Atomic orbital electron populations 1.69895 1.05856 1.27381 1.48986 1.24769 0.94775 0.98846 0.94371 0.86619 0.79685 0.82767 0.78832 1.20088 1.20899 1.20196 1.21106 0.93026 0.89872 1.52687 0.92608 1.20162 0.87732 0.81799 1.00360 1.45877 1.41737 1.32342 1.03464 1.16929 0.81021 0.81319 0.81840 1.90340 1.33207 1.31761 1.85646 1.22124 1.01598 0.97111 0.94633 1.75767 1.14597 1.12342 0.92733 1.84802 1.50806 1.44688 1.12064 1.21920 0.97401 0.93875 0.93486 1.21474 1.04796 1.03500 0.91800 1.21077 0.98042 0.92417 0.80230 1.85674 1.37708 1.74551 1.24867 1.19082 0.89216 0.91270 0.89625 1.20539 1.02937 1.03816 0.89256 1.21088 0.93909 0.94895 0.99526 1.21098 0.99533 1.00867 0.95231 1.20977 0.97588 0.96636 0.92458 1.17787 1.00784 1.02972 0.86919 1.18023 0.95264 0.93995 0.85602 1.21105 1.01798 1.02184 0.91321 1.20862 0.97589 0.96612 0.97090 1.21026 0.98573 1.00054 0.97989 1.21033 0.99428 0.99638 0.92458 1.22678 0.98028 0.97407 1.01374 0.92426 0.93273 0.91453 0.84915 0.90086 0.84462 0.85002 0.85047 0.84423 0.84618 0.86271 0.86918 0.86530 0.80551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.35 13.29 55.43 0.74 -23.61 16 2 C 0.08 2.05 5.46 -17.82 -0.10 1.95 16 3 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.53 -14.14 8.43 -34.44 -0.29 -14.43 16 8 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 9 C 0.22 5.34 4.50 -5.20 -0.02 5.32 16 10 N -0.52 -11.58 2.70 -115.64 -0.31 -11.89 16 11 C 0.60 12.91 7.59 -12.11 -0.09 12.81 16 12 O -0.53 -10.92 12.54 5.36 0.07 -10.85 16 13 C 0.00 0.02 6.79 -83.15 -0.56 -0.54 16 14 N -0.26 -5.59 8.07 33.13 0.27 -5.32 16 15 O 0.15 2.92 11.16 21.08 0.24 3.15 16 16 C 0.00 -0.02 7.53 -35.99 -0.27 -0.29 16 17 C -0.21 -3.67 6.28 -104.56 -0.66 -4.33 16 18 C 0.16 2.23 7.10 35.57 0.25 2.48 16 19 O -0.31 -4.38 10.20 -18.13 -0.18 -4.57 16 20 C 0.15 2.01 6.55 -38.45 -0.25 1.76 16 21 C -0.15 -1.46 9.98 -39.49 -0.39 -1.85 16 22 C -0.08 -0.62 10.01 -39.54 -0.40 -1.01 16 23 C -0.15 -1.30 10.05 -39.52 -0.40 -1.69 16 24 C -0.06 -0.65 9.89 -39.45 -0.39 -1.04 16 25 C -0.08 -1.14 5.86 -105.12 -0.62 -1.75 16 26 C 0.17 3.47 6.49 -83.72 -0.54 2.93 16 27 C -0.14 -2.79 9.29 -39.39 -0.37 -3.16 16 28 C -0.10 -1.68 10.04 -39.61 -0.40 -2.07 16 29 C -0.16 -2.39 10.04 -39.54 -0.40 -2.78 16 30 C -0.11 -1.72 10.04 -39.61 -0.40 -2.12 16 31 C -0.18 -3.34 9.04 -39.39 -0.36 -3.70 16 32 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 33 H 0.05 1.24 5.68 -51.93 -0.29 0.94 16 34 H 0.07 1.73 5.39 -51.93 -0.28 1.45 16 35 H 0.13 1.85 7.60 -51.93 -0.39 1.46 16 36 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 37 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 38 H 0.13 0.68 8.06 -52.49 -0.42 0.25 16 39 H 0.13 0.80 8.06 -52.48 -0.42 0.38 16 40 H 0.14 1.37 8.06 -52.49 -0.42 0.95 16 41 H 0.14 2.74 5.90 -52.49 -0.31 2.43 16 42 H 0.12 1.62 8.06 -52.49 -0.42 1.20 16 43 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 44 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 45 H 0.18 3.46 4.55 -56.17 -0.26 3.21 16 LS Contribution 379.53 15.07 5.72 5.72 Total: -1.00 -30.20 379.53 -9.60 -39.80 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -4.46 Total: 4.83 kcal Atomic # 6 Polarization: -6.86 SS G_CDS: -6.64 Total: -13.51 kcal Atomic # 7 Polarization: -41.51 SS G_CDS: 0.69 Total: -40.82 kcal Atomic # 8 Polarization: -12.39 SS G_CDS: 0.12 Total: -12.27 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -30.20 -9.60 -39.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006817342.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.154 kcal (2) G-P(sol) polarization free energy of solvation -30.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds