Wall clock time and date at job start Tue Mar 31 2020 06:23:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00115 * 2 1 4 4 H 1.48499 * 109.47392 * 239.99947 * 3 2 1 5 5 H 1.48494 * 109.47343 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47026 * 120.00252 * 3 2 1 7 7 C 1.37881 * 119.99998 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00080 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00158 * 359.97438 * 7 2 1 10 10 N 1.46489 * 109.47580 * 180.02562 * 9 7 2 11 11 C 1.34773 * 120.00449 * 83.54948 * 10 9 7 12 12 O 1.21506 * 120.00486 * 183.22203 * 11 10 9 13 13 C 1.48318 * 119.99901 * 3.22005 * 11 10 9 14 14 N 1.31911 * 127.00964 * 355.01747 * 13 11 10 15 15 O 1.21799 * 111.88354 * 179.77314 * 14 13 11 16 16 C 1.32331 * 111.39339 * 0.10879 * 15 14 13 17 17 C 1.38132 * 106.53671 * 359.79820 * 16 15 14 18 18 C 1.49801 * 121.85721 * 180.37883 * 17 16 15 19 19 O 1.43140 * 109.11106 * 334.18885 * 18 17 16 20 20 C 1.35479 * 120.48140 * 41.91794 * 19 18 17 21 21 C 1.38586 * 120.50343 * 149.19608 * 20 19 18 22 22 C 1.38147 * 120.17649 * 177.78699 * 21 20 19 23 23 C 1.38448 * 120.78061 * 359.97438 * 22 21 20 24 24 C 1.38193 * 120.03150 * 0.39471 * 23 22 21 25 25 C 1.38633 * 119.56899 * 359.93697 * 24 23 22 26 26 C 1.39843 * 120.00030 * 263.55250 * 10 9 7 27 27 C 1.38888 * 120.06957 * 352.50706 * 26 10 9 28 28 C 1.38105 * 119.92859 * 179.81497 * 27 26 10 29 29 C 1.38291 * 120.07026 * 0.44233 * 28 27 26 30 30 C 1.38295 * 120.14286 * 359.78990 * 29 28 27 31 31 C 1.38102 * 120.07196 * 359.97438 * 30 29 28 32 32 H 0.97003 * 119.99350 * 0.02562 * 1 2 3 33 33 H 1.09007 * 109.47225 * 59.99822 * 9 7 2 34 34 H 1.09001 * 109.47043 * 300.00434 * 9 7 2 35 35 H 1.09005 * 109.52843 * 214.30015 * 18 17 16 36 36 H 1.08993 * 109.59726 * 94.11890 * 18 17 16 37 37 H 1.07994 * 119.90716 * 357.76525 * 21 20 19 38 38 H 1.08000 * 119.60574 * 180.02562 * 22 21 20 39 39 H 1.08009 * 119.98595 * 180.41241 * 23 22 21 40 40 H 1.08000 * 120.22117 * 179.97438 * 24 23 22 41 41 H 1.07999 * 120.04112 * 0.02764 * 27 26 10 42 42 H 1.07996 * 119.97073 * 180.23337 * 28 27 26 43 43 H 1.08001 * 119.92704 * 179.76874 * 29 28 27 44 44 H 1.07994 * 119.95798 * 179.97438 * 30 29 28 45 45 H 1.08001 * 120.03426 * 179.97438 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2843 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 2.7406 -4.0397 1.1592 12 8 3.5739 -4.9240 1.1534 13 6 2.3150 -3.4303 2.4427 14 7 1.4963 -2.4086 2.6037 15 8 1.3337 -2.1382 3.7801 16 6 2.0291 -2.9481 4.5621 17 6 2.6946 -3.8249 3.7277 18 6 3.5844 -4.9046 4.2629 19 8 4.0808 -4.5095 5.5461 20 6 3.2626 -3.9114 6.4451 21 6 3.4642 -4.0863 7.8050 22 6 2.6541 -3.4368 8.7163 23 6 1.6333 -2.6044 8.2897 24 6 1.4093 -2.4213 6.9384 25 6 2.2131 -3.0746 6.0170 26 6 2.5539 -4.2325 -1.2039 27 6 1.8887 -3.9012 -2.3773 28 6 2.2403 -4.5124 -3.5648 29 6 3.2473 -5.4600 -3.5848 30 6 3.9083 -5.7956 -2.4174 31 6 3.5649 -5.1846 -1.2274 32 1 -0.4849 0.8401 -0.0004 33 1 0.6240 -2.5567 -0.8903 34 1 0.6247 -2.5571 0.8897 35 1 4.4203 -5.0594 3.5807 36 1 3.0177 -5.8304 4.3608 37 1 4.2564 -4.7323 8.1532 38 1 2.8197 -3.5794 9.7739 39 1 1.0119 -2.0977 9.0134 40 1 0.6136 -1.7730 6.6022 41 1 1.0997 -3.1639 -2.3618 42 1 1.7261 -4.2525 -4.4782 43 1 3.5178 -5.9392 -4.5141 44 1 4.6940 -6.5364 -2.4364 45 1 4.0812 -5.4475 -0.3160 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000006817342.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:04 Heat of formation + Delta-G solvation = 76.334996 kcal Electronic energy + Delta-G solvation = -33965.332793 eV Core-core repulsion = 29496.644978 eV Total energy + Delta-G solvation = -4468.687816 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 376.126 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -46.30415 -41.89957 -41.42629 -39.37425 -38.58563 -37.18024 -35.55208 -34.70119 -34.30323 -31.84482 -31.58970 -31.40318 -30.83384 -29.31776 -28.09050 -26.29456 -25.38972 -24.82087 -24.03482 -23.42330 -22.49352 -21.85219 -20.65605 -19.60748 -19.15746 -18.74753 -18.48465 -18.32222 -17.96090 -17.36346 -17.17967 -16.77253 -16.55015 -16.43456 -16.30924 -15.65573 -15.33917 -15.04963 -15.03569 -14.79558 -14.47996 -14.41557 -14.25663 -13.99478 -13.79608 -13.67251 -13.60468 -13.13549 -12.95797 -12.83118 -12.68793 -12.46101 -12.33017 -12.15022 -12.07388 -11.97228 -11.93530 -11.64549 -11.20381 -11.01166 -10.69802 -10.58270 -9.83464 -9.75657 -9.10901 -8.91554 -8.26636 -6.39064 -0.58264 -0.16544 0.31769 0.51291 0.60716 0.87134 1.30737 1.31365 1.38837 1.49179 1.73509 1.88060 2.00925 2.31406 2.68887 2.72331 2.97522 3.04683 3.18566 3.29117 3.52868 3.79591 3.83540 4.01665 4.10216 4.15419 4.18699 4.27604 4.33585 4.34517 4.44446 4.45576 4.57872 4.58229 4.62987 4.66895 4.85066 4.95964 5.12202 5.20560 5.22306 5.31378 5.35431 5.48100 5.54189 5.59075 5.61916 5.69968 5.72794 5.90616 6.17052 6.21974 6.23647 6.59969 6.75543 6.95540 7.27935 8.79753 Molecular weight = 376.13amu Principal moments of inertia in cm(-1) A = 0.008957 B = 0.003397 C = 0.002613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3125.152102 B = 8239.884080 C =10711.943114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.038 3.962 3 Si 0.946 3.054 4 H -0.272 1.272 5 H -0.270 1.270 6 H -0.281 1.281 7 C -0.533 4.533 8 H 0.034 0.966 9 C 0.236 3.764 10 N -0.525 5.525 11 C 0.592 3.408 12 O -0.528 6.528 13 C -0.017 4.017 14 N -0.300 5.300 15 O 0.145 5.855 16 C 0.011 3.989 17 C -0.224 4.224 18 C 0.163 3.837 19 O -0.320 6.320 20 C 0.131 3.869 21 C -0.144 4.144 22 C -0.057 4.057 23 C -0.140 4.140 24 C -0.065 4.065 25 C -0.116 4.116 26 C 0.129 3.871 27 C -0.166 4.166 28 C -0.098 4.098 29 C -0.143 4.143 30 C -0.101 4.101 31 C -0.191 4.191 32 H 0.269 0.731 33 H 0.036 0.964 34 H 0.055 0.945 35 H 0.131 0.869 36 H 0.099 0.901 37 H 0.160 0.840 38 H 0.175 0.825 39 H 0.166 0.834 40 H 0.141 0.859 41 H 0.115 0.885 42 H 0.149 0.851 43 H 0.157 0.843 44 H 0.152 0.848 45 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.074 -10.167 13.444 17.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.164 4.164 3 Si 0.772 3.228 4 H -0.197 1.197 5 H -0.195 1.195 6 H -0.207 1.207 7 C -0.571 4.571 8 H 0.053 0.947 9 C 0.116 3.884 10 N -0.244 5.244 11 C 0.381 3.619 12 O -0.407 6.407 13 C -0.172 4.172 14 N 0.000 5.000 15 O 0.071 5.929 16 C -0.055 4.055 17 C -0.230 4.230 18 C 0.088 3.912 19 O -0.234 6.234 20 C 0.086 3.914 21 C -0.163 4.163 22 C -0.075 4.075 23 C -0.157 4.157 24 C -0.083 4.083 25 C -0.118 4.118 26 C 0.035 3.965 27 C -0.187 4.187 28 C -0.117 4.117 29 C -0.161 4.161 30 C -0.119 4.119 31 C -0.210 4.210 32 H 0.078 0.922 33 H 0.054 0.946 34 H 0.072 0.928 35 H 0.148 0.852 36 H 0.117 0.883 37 H 0.178 0.822 38 H 0.193 0.807 39 H 0.183 0.817 40 H 0.159 0.841 41 H 0.133 0.867 42 H 0.167 0.833 43 H 0.175 0.825 44 H 0.169 0.831 45 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 3.832 -9.752 12.544 16.344 hybrid contribution 0.184 1.111 -0.485 1.226 sum 4.016 -8.641 12.060 15.370 Atomic orbital electron populations 1.69973 1.06812 1.28139 1.49613 1.25389 0.95504 1.01434 0.94029 0.85800 0.78757 0.79777 0.78497 1.19698 1.19476 1.20685 1.21118 0.91966 0.91269 1.52776 0.94727 1.19720 0.87747 0.81993 0.98931 1.45797 1.41793 1.32206 1.04594 1.17145 0.81160 0.81564 0.82063 1.90323 1.32998 1.31611 1.85814 1.22268 1.02103 0.97416 0.95404 1.75703 1.16436 1.13878 0.94025 1.84715 1.51285 1.45185 1.11754 1.22583 0.95590 0.92322 0.95040 1.21821 1.05783 1.04801 0.90568 1.21093 0.97510 0.91985 0.80592 1.85648 1.38231 1.74946 1.24597 1.19487 0.89475 0.91805 0.90674 1.20942 1.03588 1.03877 0.87868 1.21635 0.92012 0.92514 1.01294 1.21536 0.99610 1.00206 0.94397 1.21214 0.97313 0.96299 0.93480 1.17988 1.02980 1.05608 0.85243 1.18411 0.97055 0.95570 0.85440 1.21134 1.02054 1.03000 0.92470 1.21248 0.97703 0.95969 0.96756 1.21509 0.96756 0.98581 0.99301 1.21445 0.99712 0.99277 0.91474 1.22678 0.97936 0.97830 1.02573 0.92176 0.94633 0.92778 0.85174 0.88276 0.82222 0.80730 0.81653 0.84073 0.86707 0.83288 0.82516 0.83059 0.81609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.99 13.29 21.45 0.28 -51.70 16 2 C 0.04 2.13 5.46 84.66 0.46 2.59 16 3 Si 0.95 44.85 29.54 68.60 2.03 46.87 16 4 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 5 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 6 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 7 C -0.53 -30.29 8.43 25.60 0.22 -30.08 16 8 H 0.03 2.07 7.81 -2.91 -0.02 2.04 16 9 C 0.24 12.51 4.50 85.63 0.39 12.90 16 10 N -0.53 -25.41 2.70 -638.06 -1.72 -27.14 16 11 C 0.59 27.43 7.59 86.93 0.66 28.08 16 12 O -0.53 -23.09 12.54 -3.74 -0.05 -23.13 16 13 C -0.02 -0.76 6.79 42.16 0.29 -0.47 16 14 N -0.30 -14.24 8.07 -49.23 -0.40 -14.64 16 15 O 0.14 6.01 11.16 85.36 0.95 6.96 16 16 C 0.01 0.38 7.53 24.60 0.19 0.56 16 17 C -0.22 -8.34 6.28 -19.82 -0.12 -8.46 16 18 C 0.16 4.81 7.10 70.96 0.50 5.31 16 19 O -0.32 -8.93 10.20 -87.79 -0.90 -9.83 16 20 C 0.13 3.30 6.55 23.00 0.15 3.45 16 21 C -0.14 -2.42 9.98 22.33 0.22 -2.20 16 22 C -0.06 -0.66 10.01 22.30 0.22 -0.44 16 23 C -0.14 -1.90 10.05 22.31 0.22 -1.68 16 24 C -0.06 -1.36 9.89 22.35 0.22 -1.14 16 25 C -0.12 -3.22 5.86 -20.18 -0.12 -3.33 16 26 C 0.13 5.69 6.49 38.18 0.25 5.94 16 27 C -0.17 -6.72 9.29 22.39 0.21 -6.52 16 28 C -0.10 -3.07 10.04 22.25 0.22 -2.85 16 29 C -0.14 -3.88 10.04 22.30 0.22 -3.65 16 30 C -0.10 -3.03 10.04 22.25 0.22 -2.81 16 31 C -0.19 -7.39 9.04 22.39 0.20 -7.19 16 32 H 0.27 14.57 8.31 -92.71 -0.77 13.80 16 33 H 0.04 1.96 5.68 -2.38 -0.01 1.94 16 34 H 0.05 3.04 5.39 -2.39 -0.01 3.03 16 35 H 0.13 3.83 7.60 -2.38 -0.02 3.82 16 36 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 37 H 0.16 1.94 8.06 -2.91 -0.02 1.91 16 38 H 0.18 0.64 8.06 -2.91 -0.02 0.62 16 39 H 0.17 1.17 8.06 -2.91 -0.02 1.15 16 40 H 0.14 2.76 8.06 -2.91 -0.02 2.74 16 41 H 0.12 5.03 5.90 -2.91 -0.02 5.01 16 42 H 0.15 3.69 8.06 -2.91 -0.02 3.66 16 43 H 0.16 2.95 8.06 -2.91 -0.02 2.92 16 44 H 0.15 3.46 8.06 -2.91 -0.02 3.44 16 45 H 0.17 6.75 4.55 -61.20 -0.28 6.47 16 Total: -1.00 -71.47 379.53 5.83 -65.64 By element: Atomic # 1 Polarization: 18.14 SS G_CDS: 0.80 Total: 18.95 kcal Atomic # 6 Polarization: -16.81 SS G_CDS: 4.83 Total: -11.98 kcal Atomic # 7 Polarization: -91.64 SS G_CDS: -1.83 Total: -93.48 kcal Atomic # 8 Polarization: -26.01 SS G_CDS: 0.01 Total: -26.00 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.87 kcal Total: -71.47 5.83 -65.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006817342.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.975 kcal (2) G-P(sol) polarization free energy of solvation -71.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.640 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds