Wall clock time and date at job start Tue Mar 31 2020 05:00:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35956 * 117.00339 * 2 1 4 4 C 1.38077 * 119.99705 * 0.02562 * 3 2 1 5 5 C 1.39979 * 119.83660 * 179.97438 * 4 3 2 6 6 C 1.46966 * 120.08002 * 179.97438 * 5 4 3 7 7 C 1.35042 * 120.00294 * 180.02562 * 6 5 4 8 8 C 1.46223 * 119.99922 * 179.97438 * 7 6 5 9 9 O 1.21734 * 119.99927 * 359.97438 * 8 7 6 10 10 N 1.34776 * 119.99694 * 179.97438 * 8 7 6 11 11 C 1.40044 * 119.99950 * 175.63361 * 10 8 7 12 12 C 1.38814 * 120.05644 * 34.59718 * 11 10 8 13 13 C 1.38144 * 119.97473 * 179.70372 * 12 11 10 14 14 C 1.38478 * 120.08626 * 0.59928 * 13 12 11 15 15 F 1.35101 * 119.94564 * 179.70251 * 14 13 12 16 16 C 1.38459 * 120.11182 * 359.67598 * 14 13 12 17 17 C 1.38290 * 120.02548 * 0.02578 * 16 14 13 18 18 F 1.35103 * 120.04508 * 179.97438 * 17 16 14 19 19 C 1.40030 * 119.84712 * 359.97438 * 5 4 3 20 20 C 1.37656 * 119.99410 * 0.02562 * 19 5 4 21 21 C 1.39057 * 120.16288 * 0.24964 * 20 19 5 22 22 O 1.35610 * 119.91734 * 179.74827 * 21 20 19 23 23 C 1.34754 * 117.00524 * 5.46381 * 22 21 20 24 24 H 1.08002 * 119.99754 * 354.94966 * 23 22 21 25 25 C 1.38706 * 120.00395 * 174.95493 * 23 22 21 26 26 N 1.31515 * 119.99889 * 0.02562 * 25 23 22 27 27 Si 1.86798 * 120.00043 * 179.97438 * 25 23 22 28 28 H 1.48496 * 109.47108 * 60.00136 * 27 25 23 29 29 H 1.48501 * 109.46916 * 179.97438 * 27 25 23 30 30 H 1.48500 * 109.47083 * 299.99808 * 27 25 23 31 31 H 1.09007 * 109.46883 * 59.99866 * 1 2 3 32 32 H 1.08996 * 109.47280 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.47087 * 300.00325 * 1 2 3 34 34 H 1.08000 * 120.08336 * 359.95161 * 4 3 2 35 35 H 1.07998 * 119.99437 * 0.02562 * 6 5 4 36 36 H 1.07999 * 119.99740 * 359.97438 * 7 6 5 37 37 H 0.97003 * 120.00276 * 355.62414 * 10 8 7 38 38 H 1.07998 * 120.01613 * 359.97438 * 12 11 10 39 39 H 1.08000 * 119.95889 * 180.27567 * 13 12 11 40 40 H 1.08006 * 119.98760 * 180.02562 * 16 14 13 41 41 H 1.08003 * 120.00628 * 180.02562 * 19 5 4 42 42 H 1.07998 * 119.91533 * 179.97438 * 20 19 5 43 43 H 0.97002 * 120.00160 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2942 2.3694 0.0005 5 6 1.9333 3.6147 0.0011 6 6 1.1381 4.8507 0.0011 7 6 1.7562 6.0514 0.0011 8 6 0.9650 7.2810 0.0005 9 8 -0.2509 7.2224 -0.0004 10 7 1.5820 8.4793 0.0010 11 6 0.8274 9.6554 -0.0918 12 6 -0.4243 9.7272 0.5039 13 6 -1.1646 10.8903 0.4165 14 6 -0.6649 11.9808 -0.2754 15 9 -1.3939 13.1148 -0.3642 16 6 0.5807 11.9112 -0.8759 17 6 1.3284 10.7513 -0.7860 18 9 2.5437 10.6827 -1.3722 19 6 3.3320 3.6803 0.0016 20 6 4.0753 2.5216 0.0011 21 6 3.4405 1.2844 -0.0052 22 8 4.1776 0.1461 -0.0109 23 6 5.5133 0.2815 0.1043 24 1 5.9575 1.2659 0.1134 25 6 6.3179 -0.8433 0.2109 26 7 5.7771 -2.0421 0.1992 27 14 8.1696 -0.6556 0.3698 28 1 8.4847 0.1280 1.5913 29 1 8.7966 -1.9981 0.4681 30 1 8.6995 0.0527 -0.8230 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3633 0.5139 0.8900 34 1 0.2156 2.3144 0.0002 35 1 0.0594 4.7987 0.0011 36 1 2.8350 6.1033 0.0015 37 1 2.5486 8.5271 0.0659 38 1 -0.8175 8.8757 1.0393 39 1 -2.1365 10.9474 0.8839 40 1 0.9687 12.7631 -1.4147 41 1 3.8278 4.6398 0.0025 42 1 5.1540 2.5737 0.0011 43 1 6.3397 -2.8287 0.2742 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006834809.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:40 Heat of formation + Delta-G solvation = -110.506752 kcal Electronic energy + Delta-G solvation = -31397.784510 eV Core-core repulsion = 26432.191010 eV Total energy + Delta-G solvation = -4965.593501 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 375.111 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -49.37529 -49.30636 -40.63653 -39.78265 -38.53757 -37.75623 -36.66335 -34.95547 -33.20452 -32.36893 -31.25076 -29.97768 -29.69188 -28.51925 -26.63868 -25.66343 -24.36233 -23.64435 -22.61455 -21.85290 -21.04625 -19.65063 -18.64859 -18.30460 -18.02611 -17.92148 -17.38598 -16.90033 -16.34378 -16.10997 -16.01657 -15.66698 -15.47684 -15.27345 -15.05727 -14.88591 -14.79711 -14.56900 -14.39032 -14.06340 -13.83360 -13.67758 -13.53295 -13.36122 -12.82454 -12.54712 -12.48457 -12.26702 -11.98328 -11.89829 -11.78969 -11.54432 -11.15409 -11.12843 -10.86841 -10.78930 -10.64824 -10.57628 -10.05010 -9.67413 -9.53387 -9.42019 -8.93898 -8.45621 -8.06654 -7.00686 -6.69543 -4.20062 0.44323 0.61575 0.90927 2.04032 2.35320 2.72288 2.95097 3.00581 3.03349 3.05222 3.37476 3.48181 3.76957 3.87760 3.94773 4.20877 4.37971 4.44194 4.66707 4.78022 4.82743 4.93491 5.07160 5.10301 5.34231 5.35148 5.46445 5.48699 5.49120 5.50623 5.61351 5.66532 5.74993 5.77903 5.90126 5.98274 6.12371 6.24712 6.36822 6.44793 6.48612 6.73895 6.90482 7.00125 7.11624 7.17402 7.39103 7.70672 7.95079 8.00661 8.73025 9.40896 10.45726 Molecular weight = 375.11amu Principal moments of inertia in cm(-1) A = 0.014541 B = 0.001585 C = 0.001442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1925.175245 B =17665.273415 C =19417.336602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.303 6.303 3 C 0.052 3.948 4 C -0.134 4.134 5 C -0.174 4.174 6 C 0.051 3.949 7 C -0.289 4.289 8 C 0.561 3.439 9 O -0.539 6.539 10 N -0.672 5.672 11 C 0.117 3.883 12 C -0.068 4.068 13 C -0.142 4.142 14 C 0.107 3.893 15 F -0.134 7.134 16 C -0.173 4.173 17 C 0.098 3.902 18 F -0.128 7.128 19 C -0.054 4.054 20 C -0.227 4.227 21 C 0.150 3.850 22 O -0.143 6.143 23 C -0.391 4.391 24 H 0.098 0.902 25 C 0.042 3.958 26 N -0.841 5.841 27 Si 0.946 3.054 28 H -0.267 1.267 29 H -0.275 1.275 30 H -0.267 1.267 31 H 0.047 0.953 32 H 0.092 0.908 33 H 0.047 0.953 34 H 0.124 0.876 35 H 0.124 0.876 36 H 0.129 0.871 37 H 0.416 0.584 38 H 0.162 0.838 39 H 0.146 0.854 40 H 0.151 0.849 41 H 0.117 0.883 42 H 0.138 0.862 43 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.920 21.086 0.518 22.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.217 6.217 3 C 0.007 3.993 4 C -0.153 4.153 5 C -0.176 4.176 6 C 0.032 3.968 7 C -0.310 4.310 8 C 0.356 3.644 9 O -0.418 6.418 10 N -0.317 5.317 11 C 0.021 3.979 12 C -0.089 4.089 13 C -0.161 4.161 14 C 0.087 3.913 15 F -0.112 7.112 16 C -0.193 4.193 17 C 0.076 3.924 18 F -0.107 7.107 19 C -0.073 4.073 20 C -0.246 4.246 21 C 0.092 3.908 22 O -0.044 6.044 23 C -0.466 4.466 24 H 0.116 0.884 25 C -0.165 4.165 26 N -0.473 5.473 27 Si 0.769 3.231 28 H -0.192 1.192 29 H -0.200 1.200 30 H -0.192 1.192 31 H 0.066 0.934 32 H 0.111 0.889 33 H 0.066 0.934 34 H 0.142 0.858 35 H 0.142 0.858 36 H 0.147 0.853 37 H 0.253 0.747 38 H 0.179 0.821 39 H 0.164 0.836 40 H 0.169 0.831 41 H 0.135 0.865 42 H 0.155 0.845 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -9.582 20.243 0.473 22.401 hybrid contribution 1.342 0.577 -0.127 1.467 sum -8.239 20.821 0.346 22.394 Atomic orbital electron populations 1.22925 0.80100 1.03139 1.00428 1.86238 1.19630 1.26163 1.89690 1.18040 0.89362 0.84643 1.07280 1.20875 0.98616 0.90889 1.04952 1.18120 0.92780 0.91302 1.15356 1.22273 0.99203 0.90903 0.84451 1.22266 0.99934 0.90869 1.17922 1.18571 0.87796 0.83394 0.74665 1.90767 1.14049 1.87158 1.49827 1.43382 1.10854 1.03716 1.73747 1.17808 0.94559 0.86499 0.99069 1.21177 0.92393 0.98146 0.97149 1.21172 1.01960 0.91820 1.01174 1.17275 0.90163 0.83394 1.00475 1.91526 1.76507 1.48565 1.94612 1.20838 0.94699 0.98856 1.04874 1.17084 0.83049 0.94754 0.97540 1.91527 1.40620 1.96737 1.81797 1.20945 0.92468 0.97398 0.96475 1.20832 1.00760 0.90723 1.12329 1.18895 0.88284 0.87627 0.95963 1.83980 1.19779 1.26007 1.74590 1.21507 0.78290 0.95133 1.51654 0.88437 1.25438 1.01027 0.94115 0.95962 1.70033 1.36928 0.97877 1.42416 0.85699 0.79565 0.78305 0.79486 1.19165 1.20017 1.19163 0.93428 0.88923 0.93402 0.85795 0.85799 0.85348 0.74730 0.82051 0.83627 0.83139 0.86538 0.84451 0.91398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 9.81 101.05 0.99 1.41 16 2 O -0.30 -6.25 10.28 -34.21 -0.35 -6.60 16 3 C 0.05 1.07 6.70 -39.13 -0.26 0.81 16 4 C -0.13 -2.28 8.77 -38.99 -0.34 -2.63 16 5 C -0.17 -2.81 5.87 -105.04 -0.62 -3.43 16 6 C 0.05 0.71 9.45 -37.18 -0.35 0.36 16 7 C -0.29 -3.54 9.41 -37.51 -0.35 -3.89 16 8 C 0.56 6.98 7.58 -13.05 -0.10 6.88 16 9 O -0.54 -8.00 13.64 5.16 0.07 -7.93 16 10 N -0.67 -6.76 5.22 -11.10 -0.06 -6.82 16 11 C 0.12 1.19 6.32 -83.59 -0.53 0.66 16 12 C -0.07 -0.67 8.70 -39.40 -0.34 -1.01 16 13 C -0.14 -1.17 10.02 -39.53 -0.40 -1.57 16 14 C 0.11 0.92 7.30 -39.41 -0.29 0.63 16 15 F -0.13 -1.19 17.26 2.25 0.04 -1.16 16 16 C -0.17 -1.43 10.00 -39.48 -0.39 -1.82 16 17 C 0.10 0.92 7.31 -39.26 -0.29 0.63 16 18 F -0.13 -1.24 16.96 2.25 0.04 -1.20 16 19 C -0.05 -0.90 9.40 -39.12 -0.37 -1.27 16 20 C -0.23 -4.49 9.14 -39.49 -0.36 -4.85 16 21 C 0.15 3.45 6.67 -38.76 -0.26 3.19 16 22 O -0.14 -3.91 9.52 -13.91 -0.13 -4.05 16 23 C -0.39 -10.19 9.48 30.91 0.29 -9.90 16 24 H 0.10 2.28 5.18 -52.49 -0.27 2.01 16 25 C 0.04 1.08 5.49 -17.51 -0.10 0.99 16 26 N -0.84 -23.34 13.67 55.48 0.76 -22.58 16 27 Si 0.95 19.01 29.55 -169.99 -5.02 13.99 16 28 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 29 H -0.28 -5.44 7.11 56.52 0.40 -5.04 16 30 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 31 H 0.05 0.59 7.66 -51.93 -0.40 0.19 16 32 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.05 0.59 7.66 -51.93 -0.40 0.20 16 34 H 0.12 1.75 6.28 -52.49 -0.33 1.42 16 35 H 0.12 1.65 7.52 -52.49 -0.39 1.25 16 36 H 0.13 1.35 6.06 -52.49 -0.32 1.03 16 37 H 0.42 3.20 8.65 -40.82 -0.35 2.85 16 38 H 0.16 1.72 6.19 -52.49 -0.32 1.39 16 39 H 0.15 0.91 8.06 -52.49 -0.42 0.48 16 40 H 0.15 0.96 8.06 -52.48 -0.42 0.54 16 41 H 0.12 1.55 6.15 -52.48 -0.32 1.23 16 42 H 0.14 2.64 5.61 -52.49 -0.29 2.34 16 43 H 0.28 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 384.37 15.07 5.79 5.79 Total: -1.00 -30.94 384.37 -6.73 -37.68 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -3.81 Total: 7.68 kcal Atomic # 6 Polarization: -10.75 SS G_CDS: -4.06 Total: -14.81 kcal Atomic # 7 Polarization: -30.10 SS G_CDS: 0.70 Total: -29.40 kcal Atomic # 8 Polarization: -18.16 SS G_CDS: -0.41 Total: -18.58 kcal Atomic # 9 Polarization: -2.43 SS G_CDS: 0.08 Total: -2.36 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -5.02 Total: 13.99 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -30.94 -6.73 -37.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006834809.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.830 kcal (2) G-P(sol) polarization free energy of solvation -30.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds