Wall clock time and date at job start Tue Mar 31 2020 05:00:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35956 * 117.00339 * 2 1 4 4 C 1.38077 * 119.99705 * 0.02562 * 3 2 1 5 5 C 1.39979 * 119.83660 * 179.97438 * 4 3 2 6 6 C 1.46966 * 120.08002 * 179.97438 * 5 4 3 7 7 C 1.35042 * 120.00294 * 180.02562 * 6 5 4 8 8 C 1.46223 * 119.99922 * 179.97438 * 7 6 5 9 9 O 1.21734 * 119.99927 * 359.97438 * 8 7 6 10 10 N 1.34776 * 119.99694 * 179.97438 * 8 7 6 11 11 C 1.40044 * 119.99950 * 175.63361 * 10 8 7 12 12 C 1.38814 * 120.05644 * 34.59718 * 11 10 8 13 13 C 1.38144 * 119.97473 * 179.70372 * 12 11 10 14 14 C 1.38478 * 120.08626 * 0.59928 * 13 12 11 15 15 F 1.35101 * 119.94564 * 179.70251 * 14 13 12 16 16 C 1.38459 * 120.11182 * 359.67598 * 14 13 12 17 17 C 1.38290 * 120.02548 * 0.02578 * 16 14 13 18 18 F 1.35103 * 120.04508 * 179.97438 * 17 16 14 19 19 C 1.40030 * 119.84712 * 359.97438 * 5 4 3 20 20 C 1.37656 * 119.99410 * 0.02562 * 19 5 4 21 21 C 1.39057 * 120.16288 * 0.24964 * 20 19 5 22 22 O 1.35610 * 119.91734 * 179.74827 * 21 20 19 23 23 C 1.34754 * 117.00524 * 5.46381 * 22 21 20 24 24 H 1.08002 * 119.99754 * 354.94966 * 23 22 21 25 25 C 1.38706 * 120.00395 * 174.95493 * 23 22 21 26 26 N 1.31515 * 119.99889 * 0.02562 * 25 23 22 27 27 Si 1.86798 * 120.00043 * 179.97438 * 25 23 22 28 28 H 1.48496 * 109.47108 * 60.00136 * 27 25 23 29 29 H 1.48501 * 109.46916 * 179.97438 * 27 25 23 30 30 H 1.48500 * 109.47083 * 299.99808 * 27 25 23 31 31 H 1.09007 * 109.46883 * 59.99866 * 1 2 3 32 32 H 1.08996 * 109.47280 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.47087 * 300.00325 * 1 2 3 34 34 H 1.08000 * 120.08336 * 359.95161 * 4 3 2 35 35 H 1.07998 * 119.99437 * 0.02562 * 6 5 4 36 36 H 1.07999 * 119.99740 * 359.97438 * 7 6 5 37 37 H 0.97003 * 120.00276 * 355.62414 * 10 8 7 38 38 H 1.07998 * 120.01613 * 359.97438 * 12 11 10 39 39 H 1.08000 * 119.95889 * 180.27567 * 13 12 11 40 40 H 1.08006 * 119.98760 * 180.02562 * 16 14 13 41 41 H 1.08003 * 120.00628 * 180.02562 * 19 5 4 42 42 H 1.07998 * 119.91533 * 179.97438 * 20 19 5 43 43 H 0.97002 * 120.00160 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2942 2.3694 0.0005 5 6 1.9333 3.6147 0.0011 6 6 1.1381 4.8507 0.0011 7 6 1.7562 6.0514 0.0011 8 6 0.9650 7.2810 0.0005 9 8 -0.2509 7.2224 -0.0004 10 7 1.5820 8.4793 0.0010 11 6 0.8274 9.6554 -0.0918 12 6 -0.4243 9.7272 0.5039 13 6 -1.1646 10.8903 0.4165 14 6 -0.6649 11.9808 -0.2754 15 9 -1.3939 13.1148 -0.3642 16 6 0.5807 11.9112 -0.8759 17 6 1.3284 10.7513 -0.7860 18 9 2.5437 10.6827 -1.3722 19 6 3.3320 3.6803 0.0016 20 6 4.0753 2.5216 0.0011 21 6 3.4405 1.2844 -0.0052 22 8 4.1776 0.1461 -0.0109 23 6 5.5133 0.2815 0.1043 24 1 5.9575 1.2659 0.1134 25 6 6.3179 -0.8433 0.2109 26 7 5.7771 -2.0421 0.1992 27 14 8.1696 -0.6556 0.3698 28 1 8.4847 0.1280 1.5913 29 1 8.7966 -1.9981 0.4681 30 1 8.6995 0.0527 -0.8230 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3633 0.5139 0.8900 34 1 0.2156 2.3144 0.0002 35 1 0.0594 4.7987 0.0011 36 1 2.8350 6.1033 0.0015 37 1 2.5486 8.5271 0.0659 38 1 -0.8175 8.8757 1.0393 39 1 -2.1365 10.9474 0.8839 40 1 0.9687 12.7631 -1.4147 41 1 3.8278 4.6398 0.0025 42 1 5.1540 2.5737 0.0011 43 1 6.3397 -2.8287 0.2742 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000006834809.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:39 Heat of formation + Delta-G solvation = -128.617094 kcal Electronic energy + Delta-G solvation = -31398.569834 eV Core-core repulsion = 26432.191010 eV Total energy + Delta-G solvation = -4966.378824 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 375.111 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -50.10249 -49.99490 -41.57223 -41.26448 -39.39048 -39.31210 -38.08677 -35.85269 -34.66262 -33.94883 -31.94803 -31.32137 -30.78824 -29.70877 -27.87135 -27.37661 -25.41837 -24.47242 -23.60548 -23.28545 -22.18124 -20.73556 -19.95456 -19.42228 -19.36592 -18.84153 -18.40577 -17.81190 -17.51898 -17.10086 -16.92044 -16.72792 -16.67745 -16.38260 -16.32963 -15.98411 -15.76709 -15.57311 -15.52681 -15.33094 -15.28364 -15.04074 -14.87540 -14.10545 -13.93204 -13.68242 -13.56765 -13.35711 -13.25659 -13.23088 -12.88635 -12.67644 -12.65820 -12.50043 -12.20490 -12.12979 -12.02090 -11.48674 -11.34176 -11.04192 -10.99188 -10.52845 -10.11529 -9.50107 -9.22543 -8.54213 -8.47580 -6.11968 -0.47793 -0.12451 -0.05528 0.54712 1.05892 1.37245 1.48758 1.53738 1.86592 2.10997 2.17221 2.40539 2.55628 2.77632 2.85314 3.13948 3.24486 3.35102 3.52058 3.62247 3.83332 3.91633 4.04998 4.12927 4.15775 4.31253 4.36906 4.39687 4.43018 4.51642 4.62081 4.65322 4.71905 4.86030 4.90288 4.92484 5.02806 5.06954 5.08250 5.21038 5.29166 5.42211 5.51059 5.72593 5.75292 5.91373 5.97484 6.26927 6.59996 6.94898 6.99398 7.74770 8.73779 Molecular weight = 375.11amu Principal moments of inertia in cm(-1) A = 0.014541 B = 0.001585 C = 0.001442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1925.175245 B =17665.273415 C =19417.336602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.344 6.344 3 C 0.037 3.963 4 C -0.131 4.131 5 C -0.137 4.137 6 C 0.028 3.972 7 C -0.245 4.245 8 C 0.559 3.441 9 O -0.560 6.560 10 N -0.660 5.660 11 C 0.101 3.899 12 C -0.077 4.077 13 C -0.135 4.135 14 C 0.105 3.895 15 F -0.135 7.135 16 C -0.167 4.167 17 C 0.095 3.905 18 F -0.130 7.130 19 C -0.063 4.063 20 C -0.220 4.220 21 C 0.102 3.898 22 O -0.211 6.211 23 C -0.416 4.416 24 H 0.111 0.889 25 C -0.021 4.021 26 N -0.913 5.913 27 Si 1.020 2.980 28 H -0.255 1.255 29 H -0.275 1.275 30 H -0.255 1.255 31 H 0.066 0.934 32 H 0.108 0.892 33 H 0.066 0.934 34 H 0.157 0.843 35 H 0.134 0.866 36 H 0.155 0.845 37 H 0.428 0.572 38 H 0.153 0.847 39 H 0.165 0.835 40 H 0.170 0.830 41 H 0.159 0.841 42 H 0.137 0.863 43 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.124 26.201 0.476 28.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.260 6.260 3 C -0.008 4.008 4 C -0.150 4.150 5 C -0.138 4.138 6 C 0.009 3.991 7 C -0.266 4.266 8 C 0.352 3.648 9 O -0.441 6.441 10 N -0.305 5.305 11 C 0.005 3.995 12 C -0.097 4.097 13 C -0.155 4.155 14 C 0.085 3.915 15 F -0.113 7.113 16 C -0.187 4.187 17 C 0.074 3.926 18 F -0.108 7.108 19 C -0.081 4.081 20 C -0.240 4.240 21 C 0.050 3.950 22 O -0.117 6.117 23 C -0.492 4.492 24 H 0.128 0.872 25 C -0.220 4.220 26 N -0.550 5.550 27 Si 0.839 3.161 28 H -0.179 1.179 29 H -0.200 1.200 30 H -0.179 1.179 31 H 0.085 0.915 32 H 0.127 0.873 33 H 0.085 0.915 34 H 0.175 0.825 35 H 0.152 0.848 36 H 0.172 0.828 37 H 0.267 0.733 38 H 0.171 0.829 39 H 0.183 0.817 40 H 0.187 0.813 41 H 0.176 0.824 42 H 0.154 0.846 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -10.826 25.470 0.428 27.678 hybrid contribution 1.160 -0.264 -0.130 1.197 sum -9.666 25.205 0.298 26.997 Atomic orbital electron populations 1.23281 0.77055 1.04979 1.02138 1.86193 1.22992 1.26898 1.89886 1.18392 0.89107 0.85878 1.07460 1.21273 1.00185 0.89976 1.03530 1.18517 0.92969 0.92049 1.10301 1.22180 0.99573 0.90110 0.87263 1.22618 1.01244 0.90297 1.12409 1.18592 0.87457 0.84070 0.74632 1.90781 1.15123 1.87589 1.50562 1.43223 1.11555 1.03144 1.72606 1.17934 0.94931 0.86666 0.99992 1.21142 0.92552 0.98439 0.97557 1.21353 1.02511 0.91113 1.00486 1.17358 0.90285 0.83387 1.00464 1.91531 1.76556 1.48636 1.94611 1.21040 0.94348 0.99068 1.04257 1.17089 0.83096 0.94824 0.97631 1.91527 1.40718 1.96757 1.81847 1.21325 0.92664 0.97914 0.96179 1.21048 1.01158 0.90847 1.10926 1.19617 0.89613 0.88147 0.97615 1.83972 1.20233 1.27935 1.79515 1.21950 0.78791 0.95914 1.52507 0.87219 1.26678 1.06161 0.93542 0.95626 1.70195 1.38621 0.98800 1.47341 0.84623 0.73064 0.78313 0.80085 1.17878 1.19960 1.17863 0.91538 0.87344 0.91518 0.82515 0.84836 0.82793 0.73252 0.82902 0.81717 0.81276 0.82373 0.84566 0.91745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.54 9.81 113.37 1.11 1.66 16 2 O -0.34 -14.81 10.28 -79.08 -0.81 -15.63 16 3 C 0.04 1.55 6.70 22.57 0.15 1.70 16 4 C -0.13 -4.20 8.77 22.65 0.20 -4.00 16 5 C -0.14 -3.96 5.87 -20.13 -0.12 -4.08 16 6 C 0.03 0.65 9.45 23.82 0.23 0.87 16 7 C -0.25 -4.70 9.41 23.61 0.22 -4.48 16 8 C 0.56 11.52 7.58 86.32 0.65 12.17 16 9 O -0.56 -14.64 13.64 -4.46 -0.06 -14.70 16 10 N -0.66 -10.66 5.22 -307.23 -1.60 -12.26 16 11 C 0.10 1.73 6.32 38.16 0.24 1.97 16 12 C -0.08 -1.29 8.70 22.39 0.19 -1.10 16 13 C -0.14 -1.84 10.02 22.30 0.22 -1.62 16 14 C 0.11 1.49 7.30 22.38 0.16 1.65 16 15 F -0.13 -2.03 17.26 44.97 0.78 -1.25 16 16 C -0.17 -2.23 10.00 22.33 0.22 -2.01 16 17 C 0.10 1.49 7.31 22.48 0.16 1.65 16 18 F -0.13 -2.09 16.96 44.97 0.76 -1.33 16 19 C -0.06 -1.90 9.40 22.57 0.21 -1.68 16 20 C -0.22 -8.75 9.14 22.33 0.20 -8.55 16 21 C 0.10 4.96 6.67 22.80 0.15 5.11 16 22 O -0.21 -12.55 9.52 -6.46 -0.06 -12.61 16 23 C -0.42 -23.35 9.48 67.93 0.64 -22.71 16 24 H 0.11 5.45 5.18 -2.91 -0.02 5.44 16 25 C -0.02 -1.18 5.49 84.85 0.47 -0.71 16 26 N -0.91 -55.29 13.67 21.62 0.30 -55.00 16 27 Si 1.02 41.12 29.55 68.60 2.03 43.15 16 28 H -0.25 -9.54 7.11 99.48 0.71 -8.83 16 29 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 30 H -0.25 -9.53 7.11 99.48 0.71 -8.82 16 31 H 0.07 1.54 7.66 -2.38 -0.02 1.52 16 32 H 0.11 2.57 8.14 -2.39 -0.02 2.55 16 33 H 0.07 1.55 7.66 -2.38 -0.02 1.53 16 34 H 0.16 3.92 6.28 -2.91 -0.02 3.90 16 35 H 0.13 2.94 7.52 -2.91 -0.02 2.91 16 36 H 0.15 2.21 6.06 -2.91 -0.02 2.19 16 37 H 0.43 4.68 8.65 -92.71 -0.80 3.88 16 38 H 0.15 2.88 6.19 -2.91 -0.02 2.86 16 39 H 0.17 1.53 8.06 -2.91 -0.02 1.51 16 40 H 0.17 1.57 8.06 -2.91 -0.02 1.55 16 41 H 0.16 3.37 6.15 -2.91 -0.02 3.36 16 42 H 0.14 5.33 5.61 -2.91 -0.02 5.31 16 43 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 Total: -1.00 -75.59 384.37 6.98 -68.62 By element: Atomic # 1 Polarization: 24.86 SS G_CDS: 0.32 Total: 25.18 kcal Atomic # 6 Polarization: -29.50 SS G_CDS: 5.33 Total: -24.16 kcal Atomic # 7 Polarization: -65.95 SS G_CDS: -1.31 Total: -67.26 kcal Atomic # 8 Polarization: -42.01 SS G_CDS: -0.93 Total: -42.94 kcal Atomic # 9 Polarization: -4.12 SS G_CDS: 1.54 Total: -2.58 kcal Atomic # 14 Polarization: 41.12 SS G_CDS: 2.03 Total: 43.15 kcal Total: -75.59 6.98 -68.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006834809.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.001 kcal (2) G-P(sol) polarization free energy of solvation -75.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds