Wall clock time and date at job start Tue Mar 31 2020 06:23:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38285 * 119.96521 * 2 1 4 4 C 1.38281 * 120.13198 * 179.97438 * 3 2 1 5 5 C 1.50706 * 119.96062 * 180.02562 * 4 3 2 6 6 C 1.38114 * 120.07132 * 0.02562 * 4 3 2 7 7 C 1.38848 * 119.92956 * 359.97438 * 6 4 3 8 8 N 1.40106 * 120.06404 * 180.02562 * 7 6 4 9 9 C 1.34761 * 119.44593 * 251.07428 * 8 7 6 10 10 O 1.21794 * 120.28013 * 0.05308 * 9 8 7 11 11 C 1.41879 * 119.43637 * 180.02562 * 9 8 7 12 12 O 1.35043 * 132.65164 * 180.02562 * 11 9 8 13 13 C 1.34866 * 111.17556 * 179.97438 * 12 11 9 14 14 C 1.39059 * 132.76996 * 179.97438 * 13 12 11 15 15 C 1.37806 * 119.92489 * 179.97438 * 14 13 12 16 16 C 1.38759 * 120.67570 * 0.05101 * 15 14 13 17 17 C 1.36684 * 120.39712 * 359.94690 * 16 15 14 18 18 C 1.39538 * 119.81233 * 0.03224 * 17 16 15 19 19 C 1.38251 * 118.35794 * 359.73196 * 11 9 8 20 20 N 1.37953 * 119.67602 * 0.53637 * 19 11 9 21 21 C 1.37035 * 119.92193 * 179.72907 * 20 19 11 22 22 H 1.07995 * 120.00223 * 43.08544 * 21 20 19 23 23 C 1.38982 * 119.99994 * 223.08031 * 21 20 19 24 24 N 1.31346 * 120.00432 * 198.45242 * 23 21 20 25 25 Si 1.86809 * 119.99685 * 18.45328 * 23 21 20 26 26 H 1.48500 * 109.47278 * 265.44072 * 25 23 21 27 27 H 1.48502 * 109.47094 * 25.44431 * 25 23 21 28 28 H 1.48507 * 109.46896 * 145.44091 * 25 23 21 29 29 C 1.34445 * 119.44535 * 71.10289 * 8 7 6 30 30 O 1.21576 * 119.36682 * 359.94843 * 29 8 7 31 31 C 1.38114 * 119.96684 * 180.26811 * 2 1 3 32 32 H 1.08994 * 109.47559 * 90.00343 * 1 2 3 33 33 H 1.08999 * 109.47643 * 210.00358 * 1 2 3 34 34 H 1.09009 * 109.47178 * 330.00336 * 1 2 3 35 35 H 1.08004 * 119.93058 * 359.97140 * 3 2 1 36 36 H 1.08998 * 109.46738 * 269.97508 * 5 4 3 37 37 H 1.08998 * 109.47438 * 29.97738 * 5 4 3 38 38 H 1.09003 * 109.46856 * 149.97559 * 5 4 3 39 39 H 1.08001 * 120.03166 * 179.97438 * 6 4 3 40 40 H 1.08004 * 120.03477 * 359.97438 * 14 13 12 41 41 H 1.08002 * 119.66095 * 180.02562 * 15 14 13 42 42 H 1.07998 * 119.80458 * 179.97438 * 16 15 14 43 43 H 1.07998 * 120.09341 * 180.02562 * 17 16 15 44 44 H 0.97000 * 120.00014 * 180.02562 * 24 23 21 45 45 H 1.08001 * 120.03607 * 0.02883 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1976 1.1980 0.0000 4 6 3.5804 1.2020 0.0005 5 6 4.3293 2.5099 0.0011 6 6 4.2760 0.0088 0.0005 7 6 3.5853 -1.1957 0.0005 8 7 4.2880 -2.4078 0.0011 9 6 4.2914 -3.1721 -1.1088 10 8 3.6895 -2.8117 -2.1044 11 6 5.0026 -4.3997 -1.1079 12 8 5.1836 -5.3530 -2.0471 13 6 5.9513 -6.3583 -1.5792 14 6 6.4100 -7.5405 -2.1500 15 6 7.1988 -8.3983 -1.4145 16 6 7.5421 -8.0964 -0.1044 17 6 7.1025 -6.9400 0.4769 18 6 6.3031 -6.0580 -0.2511 19 6 5.6771 -4.7670 0.0417 20 7 5.6339 -3.9471 1.1503 21 6 6.2960 -4.3089 2.2943 22 1 7.2936 -4.7182 2.2343 23 6 5.6837 -4.1490 3.5317 24 7 6.4084 -4.1424 4.6271 25 14 3.8300 -3.9436 3.6368 26 1 3.4932 -2.4976 3.6696 27 1 3.1941 -4.5732 2.4517 28 1 3.3289 -4.5967 4.8729 29 6 4.9471 -2.7891 1.1091 30 8 4.9231 -2.0748 2.0926 31 6 2.1968 -1.1965 -0.0056 32 1 -0.3634 -0.0001 -1.0276 33 1 -0.3634 -0.8899 0.5139 34 1 -0.3634 0.8901 0.5138 35 1 1.6559 2.1324 -0.0005 36 1 4.5106 2.8251 -1.0264 37 1 3.7371 3.2674 0.5145 38 1 5.2818 2.3829 0.5157 39 1 5.3560 0.0127 0.0005 40 1 6.1483 -7.7861 -3.1687 41 1 7.5531 -9.3150 -1.8622 42 1 8.1608 -8.7789 0.4594 43 1 7.3731 -6.7097 1.4968 44 1 5.9810 -4.0312 5.4907 45 1 1.6569 -2.1318 -0.0104 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006858735.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:13 Heat of formation + Delta-G solvation = 33.026380 kcal Electronic energy + Delta-G solvation = -34795.804260 eV Core-core repulsion = 30325.238442 eV Total energy + Delta-G solvation = -4470.565818 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 376.126 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -42.61702 -41.24947 -39.27638 -38.47514 -37.50761 -36.14856 -35.00231 -33.49727 -32.91652 -31.39689 -31.05332 -30.10000 -29.08151 -27.25464 -26.69792 -25.63033 -24.78447 -23.20738 -22.72223 -21.63438 -21.28845 -20.69603 -19.28709 -18.74240 -17.98759 -17.00939 -16.75263 -16.51502 -16.06048 -15.75334 -15.72876 -15.45365 -15.25631 -14.64291 -14.37707 -14.02928 -13.95595 -13.74500 -13.63238 -13.51782 -13.31463 -13.19651 -13.07959 -12.91091 -12.52059 -12.45171 -12.09546 -12.06826 -11.87740 -11.83738 -11.53671 -11.50129 -11.17636 -11.00640 -10.76701 -10.66226 -10.39529 -10.04066 -9.77074 -9.50293 -9.05404 -8.83523 -8.53256 -8.45900 -8.44106 -7.46502 -6.83656 -4.66625 0.72364 1.32312 1.47259 1.52181 2.03609 2.11732 2.50988 3.04488 3.12079 3.21842 3.28930 3.70283 3.77323 3.84041 3.95348 4.13050 4.50798 4.70055 4.79959 4.87755 4.93220 4.94993 5.09831 5.12507 5.21966 5.35542 5.38542 5.40474 5.51174 5.56443 5.57677 5.62042 5.64814 5.74426 5.83090 5.87282 5.91465 6.16451 6.20580 6.30779 6.35226 6.42427 6.52658 6.58500 6.60495 6.64360 6.67287 6.83867 7.07719 7.08269 7.35684 7.52036 7.92245 8.02913 8.16265 8.64692 8.87568 10.17742 Molecular weight = 376.13amu Principal moments of inertia in cm(-1) A = 0.010048 B = 0.003981 C = 0.003263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2785.832025 B = 7031.105037 C = 8578.019400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.079 4.079 3 C -0.113 4.113 4 C -0.078 4.078 5 C -0.110 4.110 6 C -0.094 4.094 7 C 0.155 3.845 8 N -0.502 5.502 9 C 0.584 3.416 10 O -0.522 6.522 11 C -0.164 4.164 12 O -0.159 6.159 13 C 0.104 3.896 14 C -0.132 4.132 15 C -0.072 4.072 16 C -0.159 4.159 17 C -0.029 4.029 18 C -0.128 4.128 19 C 0.168 3.832 20 N -0.336 5.336 21 C -0.366 4.366 22 H 0.124 0.876 23 C 0.107 3.893 24 N -0.821 5.821 25 Si 0.891 3.109 26 H -0.243 1.243 27 H -0.275 1.275 28 H -0.286 1.286 29 C 0.641 3.359 30 O -0.505 6.505 31 C -0.100 4.100 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.125 0.875 36 H 0.070 0.930 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.127 0.873 40 H 0.133 0.867 41 H 0.134 0.866 42 H 0.130 0.870 43 H 0.143 0.857 44 H 0.286 0.714 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.211 0.895 -7.781 8.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.079 4.079 3 C -0.131 4.131 4 C -0.078 4.078 5 C -0.167 4.167 6 C -0.113 4.113 7 C 0.066 3.934 8 N -0.245 5.245 9 C 0.382 3.618 10 O -0.399 6.399 11 C -0.218 4.218 12 O -0.059 6.059 13 C 0.054 3.946 14 C -0.151 4.151 15 C -0.090 4.090 16 C -0.178 4.178 17 C -0.048 4.048 18 C -0.131 4.131 19 C 0.056 3.944 20 N -0.043 5.043 21 C -0.491 4.491 22 H 0.141 0.859 23 C -0.109 4.109 24 N -0.450 5.450 25 Si 0.718 3.282 26 H -0.168 1.168 27 H -0.200 1.200 28 H -0.214 1.214 29 C 0.350 3.650 30 O -0.379 6.379 31 C -0.120 4.120 32 H 0.090 0.910 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.143 0.857 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.145 0.855 40 H 0.151 0.849 41 H 0.152 0.848 42 H 0.148 0.852 43 H 0.161 0.839 44 H 0.097 0.903 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -3.603 1.613 -7.643 8.602 hybrid contribution -0.596 -0.171 0.341 0.707 sum -4.199 1.442 -7.303 8.546 Atomic orbital electron populations 1.20758 0.90714 1.02799 1.02406 1.19666 0.96139 0.92250 0.99866 1.20915 0.93361 0.97423 1.01437 1.19689 0.93714 0.94724 0.99708 1.20763 1.00118 0.93517 1.02296 1.20976 1.00215 0.90597 0.99554 1.17196 0.90412 0.83217 1.02554 1.43643 1.47774 1.20240 1.12817 1.15237 0.81658 0.82135 0.82763 1.90847 1.44825 1.72836 1.31402 1.19015 1.15567 0.97384 0.89866 1.83901 1.59553 1.25768 1.36721 1.19741 0.92983 0.90074 0.91819 1.19860 1.02596 0.91420 1.01189 1.20962 0.95692 0.98247 0.94087 1.20751 1.03397 0.97974 0.95638 1.20686 0.92408 0.91536 1.00139 1.18879 1.04858 0.94381 0.94940 1.19888 0.95315 0.90670 0.88555 1.40201 1.40703 1.12111 1.11277 1.19081 1.01151 1.48316 0.80534 0.85878 1.25254 1.00114 0.91130 0.94387 1.69643 1.37300 1.38973 0.99080 0.86590 0.83108 0.80452 0.78067 1.16799 1.19983 1.21383 1.16393 0.82489 0.82700 0.83468 1.90911 1.63395 1.51710 1.31880 1.20965 0.92301 0.98548 1.00148 0.90994 0.91522 0.91386 0.85686 0.91106 0.91411 0.91287 0.85542 0.84869 0.84839 0.85194 0.83906 0.90329 0.85883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.23 10.01 36.00 0.36 -0.87 16 2 C -0.08 -1.18 5.88 -104.65 -0.62 -1.80 16 3 C -0.11 -1.57 9.35 -39.55 -0.37 -1.94 16 4 C -0.08 -1.16 5.88 -104.65 -0.62 -1.78 16 5 C -0.11 -1.24 10.01 36.01 0.36 -0.88 16 6 C -0.09 -1.73 9.21 -39.40 -0.36 -2.09 16 7 C 0.15 3.20 4.06 -83.62 -0.34 2.86 16 8 N -0.50 -11.46 2.62 -67.32 -0.18 -11.64 16 9 C 0.58 13.41 7.35 -14.87 -0.11 13.30 16 10 O -0.52 -12.43 16.84 5.09 0.09 -12.34 16 11 C -0.16 -3.66 7.32 -38.18 -0.28 -3.94 16 12 O -0.16 -3.25 10.59 2.05 0.02 -3.23 16 13 C 0.10 1.84 7.38 -38.37 -0.28 1.56 16 14 C -0.13 -1.78 10.07 -39.43 -0.40 -2.17 16 15 C -0.07 -0.82 10.01 -39.55 -0.40 -1.21 16 16 C -0.16 -2.03 9.98 -39.95 -0.40 -2.43 16 17 C -0.03 -0.48 9.76 -39.66 -0.39 -0.87 16 18 C -0.13 -2.47 6.24 -105.21 -0.66 -3.13 16 19 C 0.17 3.76 6.87 -81.81 -0.56 3.19 16 20 N -0.34 -8.25 2.33 -62.49 -0.15 -8.40 16 21 C -0.37 -9.40 8.98 -14.95 -0.13 -9.53 16 22 H 0.12 3.14 7.12 -52.49 -0.37 2.77 16 23 C 0.11 2.84 4.85 -17.48 -0.08 2.75 16 24 N -0.82 -21.92 13.95 55.50 0.77 -21.14 16 25 Si 0.89 22.15 24.79 -169.99 -4.21 17.94 16 26 H -0.24 -6.32 6.33 56.52 0.36 -5.96 16 27 H -0.27 -6.91 7.11 56.52 0.40 -6.51 16 28 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 29 C 0.64 15.88 6.22 -87.28 -0.54 15.33 16 30 O -0.51 -13.40 11.43 5.30 0.06 -13.34 16 31 C -0.10 -1.86 9.24 -39.40 -0.36 -2.22 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.07 0.73 8.09 -51.93 -0.42 0.31 16 34 H 0.07 0.63 8.09 -51.92 -0.42 0.21 16 35 H 0.13 1.31 8.06 -52.48 -0.42 0.89 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.63 8.08 -51.93 -0.42 0.21 16 38 H 0.07 0.78 8.08 -51.93 -0.42 0.36 16 39 H 0.13 2.28 8.06 -52.49 -0.42 1.86 16 40 H 0.13 1.44 8.06 -52.48 -0.42 1.01 16 41 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 42 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 43 H 0.14 2.42 6.85 -52.49 -0.36 2.06 16 44 H 0.29 7.13 8.31 -40.82 -0.34 6.79 16 45 H 0.12 2.24 8.06 -52.49 -0.42 1.82 16 LS Contribution 380.99 15.07 5.74 5.74 Total: -1.00 -31.77 380.99 -9.00 -40.77 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -4.97 Total: 1.51 kcal Atomic # 6 Polarization: 10.31 SS G_CDS: -6.18 Total: 4.13 kcal Atomic # 7 Polarization: -41.63 SS G_CDS: 0.45 Total: -41.18 kcal Atomic # 8 Polarization: -29.07 SS G_CDS: 0.17 Total: -28.90 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.21 Total: 17.94 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -31.77 -9.00 -40.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006858735.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.795 kcal (2) G-P(sol) polarization free energy of solvation -31.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.769 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds