Wall clock time and date at job start Tue Mar 31 2020 06:23:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38285 * 119.96521 * 2 1 4 4 C 1.38281 * 120.13198 * 179.97438 * 3 2 1 5 5 C 1.50706 * 119.96062 * 180.02562 * 4 3 2 6 6 C 1.38114 * 120.07132 * 0.02562 * 4 3 2 7 7 C 1.38848 * 119.92956 * 359.97438 * 6 4 3 8 8 N 1.40106 * 120.06404 * 180.02562 * 7 6 4 9 9 C 1.34761 * 119.44593 * 251.07428 * 8 7 6 10 10 O 1.21794 * 120.28013 * 0.05308 * 9 8 7 11 11 C 1.41879 * 119.43637 * 180.02562 * 9 8 7 12 12 O 1.35043 * 132.65164 * 180.02562 * 11 9 8 13 13 C 1.34866 * 111.17556 * 179.97438 * 12 11 9 14 14 C 1.39059 * 132.76996 * 179.97438 * 13 12 11 15 15 C 1.37806 * 119.92489 * 179.97438 * 14 13 12 16 16 C 1.38759 * 120.67570 * 0.05101 * 15 14 13 17 17 C 1.36684 * 120.39712 * 359.94690 * 16 15 14 18 18 C 1.39538 * 119.81233 * 0.03224 * 17 16 15 19 19 C 1.38251 * 118.35794 * 359.73196 * 11 9 8 20 20 N 1.37953 * 119.67602 * 0.53637 * 19 11 9 21 21 C 1.37035 * 119.92193 * 179.72907 * 20 19 11 22 22 H 1.07995 * 120.00223 * 43.08544 * 21 20 19 23 23 C 1.38982 * 119.99994 * 223.08031 * 21 20 19 24 24 N 1.31346 * 120.00432 * 198.45242 * 23 21 20 25 25 Si 1.86809 * 119.99685 * 18.45328 * 23 21 20 26 26 H 1.48500 * 109.47278 * 265.44072 * 25 23 21 27 27 H 1.48502 * 109.47094 * 25.44431 * 25 23 21 28 28 H 1.48507 * 109.46896 * 145.44091 * 25 23 21 29 29 C 1.34445 * 119.44535 * 71.10289 * 8 7 6 30 30 O 1.21576 * 119.36682 * 359.94843 * 29 8 7 31 31 C 1.38114 * 119.96684 * 180.26811 * 2 1 3 32 32 H 1.08994 * 109.47559 * 90.00343 * 1 2 3 33 33 H 1.08999 * 109.47643 * 210.00358 * 1 2 3 34 34 H 1.09009 * 109.47178 * 330.00336 * 1 2 3 35 35 H 1.08004 * 119.93058 * 359.97140 * 3 2 1 36 36 H 1.08998 * 109.46738 * 269.97508 * 5 4 3 37 37 H 1.08998 * 109.47438 * 29.97738 * 5 4 3 38 38 H 1.09003 * 109.46856 * 149.97559 * 5 4 3 39 39 H 1.08001 * 120.03166 * 179.97438 * 6 4 3 40 40 H 1.08004 * 120.03477 * 359.97438 * 14 13 12 41 41 H 1.08002 * 119.66095 * 180.02562 * 15 14 13 42 42 H 1.07998 * 119.80458 * 179.97438 * 16 15 14 43 43 H 1.07998 * 120.09341 * 180.02562 * 17 16 15 44 44 H 0.97000 * 120.00014 * 180.02562 * 24 23 21 45 45 H 1.08001 * 120.03607 * 0.02883 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1976 1.1980 0.0000 4 6 3.5804 1.2020 0.0005 5 6 4.3293 2.5099 0.0011 6 6 4.2760 0.0088 0.0005 7 6 3.5853 -1.1957 0.0005 8 7 4.2880 -2.4078 0.0011 9 6 4.2914 -3.1721 -1.1088 10 8 3.6895 -2.8117 -2.1044 11 6 5.0026 -4.3997 -1.1079 12 8 5.1836 -5.3530 -2.0471 13 6 5.9513 -6.3583 -1.5792 14 6 6.4100 -7.5405 -2.1500 15 6 7.1988 -8.3983 -1.4145 16 6 7.5421 -8.0964 -0.1044 17 6 7.1025 -6.9400 0.4769 18 6 6.3031 -6.0580 -0.2511 19 6 5.6771 -4.7670 0.0417 20 7 5.6339 -3.9471 1.1503 21 6 6.2960 -4.3089 2.2943 22 1 7.2936 -4.7182 2.2343 23 6 5.6837 -4.1490 3.5317 24 7 6.4084 -4.1424 4.6271 25 14 3.8300 -3.9436 3.6368 26 1 3.4932 -2.4976 3.6696 27 1 3.1941 -4.5732 2.4517 28 1 3.3289 -4.5967 4.8729 29 6 4.9471 -2.7891 1.1091 30 8 4.9231 -2.0748 2.0926 31 6 2.1968 -1.1965 -0.0056 32 1 -0.3634 -0.0001 -1.0276 33 1 -0.3634 -0.8899 0.5139 34 1 -0.3634 0.8901 0.5138 35 1 1.6559 2.1324 -0.0005 36 1 4.5106 2.8251 -1.0264 37 1 3.7371 3.2674 0.5145 38 1 5.2818 2.3829 0.5157 39 1 5.3560 0.0127 0.0005 40 1 6.1483 -7.7861 -3.1687 41 1 7.5531 -9.3150 -1.8622 42 1 8.1608 -8.7789 0.4594 43 1 7.3731 -6.7097 1.4968 44 1 5.9810 -4.0312 5.4907 45 1 1.6569 -2.1318 -0.0104 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000006858735.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:11 Heat of formation + Delta-G solvation = 15.611902 kcal Electronic energy + Delta-G solvation = -34796.559409 eV Core-core repulsion = 30325.238442 eV Total energy + Delta-G solvation = -4471.320967 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 376.126 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -44.28754 -42.83838 -40.80590 -40.08684 -38.78956 -37.93756 -36.78374 -34.82867 -34.61055 -32.82061 -32.54094 -31.38306 -30.55579 -28.26792 -27.88730 -27.51693 -26.28510 -24.99132 -24.06798 -22.99013 -22.86307 -21.90010 -21.03087 -20.29689 -19.63807 -18.73141 -18.44034 -17.93162 -17.58630 -17.29428 -17.18311 -17.08139 -16.72201 -16.31566 -15.87192 -15.72894 -15.55326 -15.15089 -15.00222 -14.87478 -14.78266 -14.64106 -14.18956 -14.04749 -14.03407 -13.87796 -13.42409 -13.29244 -13.20200 -13.03443 -12.87421 -12.70685 -12.66955 -12.59451 -12.34105 -12.21667 -12.04747 -11.74192 -11.58555 -11.34361 -10.97380 -10.33571 -9.84113 -9.75249 -9.70904 -9.09935 -8.85360 -6.69325 -0.79203 -0.01049 0.19703 0.25202 0.43926 0.60658 0.66601 1.08638 1.14137 1.22188 1.54800 1.93688 2.05230 2.19049 2.50153 2.63584 2.73642 3.01725 3.30183 3.59645 3.67697 3.70881 3.80766 3.93064 3.97153 4.20194 4.22716 4.23429 4.26342 4.46481 4.49288 4.56760 4.59878 4.69298 4.76178 4.77204 4.81771 4.92649 4.97480 5.07948 5.14577 5.19062 5.24091 5.25035 5.35096 5.39036 5.44384 5.48393 5.55360 5.60115 5.85939 5.96696 6.06287 6.13433 6.30640 6.66564 6.99465 8.19932 Molecular weight = 376.13amu Principal moments of inertia in cm(-1) A = 0.010048 B = 0.003981 C = 0.003263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2785.832025 B = 7031.105037 C = 8578.019400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.074 4.074 3 C -0.104 4.104 4 C -0.074 4.074 5 C -0.108 4.108 6 C -0.121 4.121 7 C 0.111 3.889 8 N -0.499 5.499 9 C 0.581 3.419 10 O -0.537 6.537 11 C -0.172 4.172 12 O -0.169 6.169 13 C 0.086 3.914 14 C -0.125 4.125 15 C -0.043 4.043 16 C -0.137 4.137 17 C -0.051 4.051 18 C -0.160 4.160 19 C 0.157 3.843 20 N -0.352 5.352 21 C -0.370 4.370 22 H 0.116 0.884 23 C 0.084 3.916 24 N -0.848 5.848 25 Si 0.924 3.076 26 H -0.265 1.265 27 H -0.289 1.289 28 H -0.265 1.265 29 C 0.637 3.363 30 O -0.535 6.535 31 C -0.130 4.130 32 H 0.087 0.913 33 H 0.062 0.938 34 H 0.097 0.903 35 H 0.173 0.827 36 H 0.089 0.911 37 H 0.096 0.904 38 H 0.062 0.938 39 H 0.114 0.886 40 H 0.168 0.832 41 H 0.191 0.809 42 H 0.169 0.831 43 H 0.128 0.872 44 H 0.291 0.709 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.586 -0.170 -9.621 10.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.075 4.075 3 C -0.121 4.121 4 C -0.074 4.074 5 C -0.164 4.164 6 C -0.140 4.140 7 C 0.023 3.977 8 N -0.240 5.240 9 C 0.379 3.621 10 O -0.416 6.416 11 C -0.226 4.226 12 O -0.070 6.070 13 C 0.038 3.962 14 C -0.143 4.143 15 C -0.060 4.060 16 C -0.155 4.155 17 C -0.070 4.070 18 C -0.162 4.162 19 C 0.047 3.953 20 N -0.060 5.060 21 C -0.494 4.494 22 H 0.133 0.867 23 C -0.129 4.129 24 N -0.480 5.480 25 Si 0.752 3.248 26 H -0.191 1.191 27 H -0.215 1.215 28 H -0.191 1.191 29 C 0.345 3.655 30 O -0.411 6.411 31 C -0.149 4.149 32 H 0.106 0.894 33 H 0.081 0.919 34 H 0.116 0.884 35 H 0.190 0.810 36 H 0.107 0.893 37 H 0.114 0.886 38 H 0.081 0.919 39 H 0.132 0.868 40 H 0.186 0.814 41 H 0.209 0.791 42 H 0.187 0.813 43 H 0.146 0.854 44 H 0.102 0.898 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -3.975 0.514 -9.498 10.309 hybrid contribution -0.408 -0.004 0.660 0.776 sum -4.383 0.509 -8.838 9.879 Atomic orbital electron populations 1.20859 0.87653 1.04137 1.03790 1.20189 0.98313 0.91335 0.97676 1.21459 0.92932 0.98742 0.99011 1.20204 0.94748 0.94931 0.97543 1.20855 0.99826 0.91936 1.03782 1.21103 0.99915 0.91464 1.01561 1.17712 0.91487 0.82938 1.05532 1.43632 1.47399 1.21027 1.11972 1.15457 0.81479 0.82450 0.82687 1.90800 1.45611 1.73411 1.31773 1.19095 1.15480 0.97537 0.90469 1.83873 1.60591 1.26186 1.36347 1.20413 0.93338 0.90892 0.91606 1.20503 1.01546 0.89341 1.02907 1.21659 0.92585 0.98922 0.92855 1.21268 1.01539 0.96229 0.96419 1.20775 0.93351 0.93000 0.99865 1.19128 1.06820 0.93878 0.96383 1.20391 0.95403 0.92097 0.87400 1.40195 1.41467 1.12660 1.11688 1.18969 1.01045 1.48423 0.81007 0.86709 1.25556 1.01421 0.91350 0.94576 1.69653 1.37831 1.41090 0.99415 0.86099 0.81680 0.78932 0.78099 1.19133 1.21483 1.19078 1.16505 0.82707 0.82618 0.83691 1.90852 1.64764 1.52645 1.32856 1.21107 0.91671 0.99796 1.02322 0.89399 0.91853 0.88415 0.80954 0.89258 0.88551 0.91918 0.86825 0.81435 0.79143 0.81329 0.85444 0.89801 0.87156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.19 10.01 71.23 0.71 -1.48 16 2 C -0.07 -2.19 5.88 -19.88 -0.12 -2.31 16 3 C -0.10 -2.65 9.35 22.29 0.21 -2.44 16 4 C -0.07 -2.17 5.88 -19.88 -0.12 -2.28 16 5 C -0.11 -2.21 10.01 71.24 0.71 -1.49 16 6 C -0.12 -4.73 9.21 22.39 0.21 -4.53 16 7 C 0.11 4.92 4.06 38.11 0.15 5.08 16 8 N -0.50 -24.70 2.62 -603.54 -1.58 -26.28 16 9 C 0.58 28.64 7.35 85.14 0.63 29.27 16 10 O -0.54 -27.16 16.84 -4.63 -0.08 -27.24 16 11 C -0.17 -8.15 7.32 23.17 0.17 -7.98 16 12 O -0.17 -7.08 10.59 -15.50 -0.16 -7.24 16 13 C 0.09 3.00 7.38 23.05 0.17 3.17 16 14 C -0.12 -2.85 10.07 22.36 0.23 -2.63 16 15 C -0.04 -0.72 10.01 22.29 0.22 -0.50 16 16 C -0.14 -2.91 9.98 22.03 0.22 -2.69 16 17 C -0.05 -1.67 9.76 22.22 0.22 -1.45 16 18 C -0.16 -6.29 6.24 -20.24 -0.13 -6.41 16 19 C 0.16 7.49 6.87 40.32 0.28 7.77 16 20 N -0.35 -18.53 2.33 -469.94 -1.10 -19.63 16 21 C -0.37 -20.21 8.98 84.06 0.76 -19.46 16 22 H 0.12 6.29 7.12 -2.91 -0.02 6.27 16 23 C 0.08 4.68 4.85 84.94 0.41 5.09 16 24 N -0.85 -47.23 13.95 21.66 0.30 -46.93 16 25 Si 0.92 47.99 24.79 68.60 1.70 49.69 16 26 H -0.27 -14.61 6.33 99.48 0.63 -13.98 16 27 H -0.29 -15.40 7.11 99.48 0.71 -14.70 16 28 H -0.26 -12.52 7.11 99.48 0.71 -11.81 16 29 C 0.64 34.08 6.22 179.18 1.12 35.19 16 30 O -0.53 -30.58 11.43 -3.96 -0.05 -30.63 16 31 C -0.13 -5.08 9.24 22.39 0.21 -4.88 16 32 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.06 1.34 8.09 -2.39 -0.02 1.32 16 34 H 0.10 1.43 8.09 -2.38 -0.02 1.41 16 35 H 0.17 2.75 8.06 -2.91 -0.02 2.73 16 36 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.10 1.45 8.08 -2.39 -0.02 1.43 16 38 H 0.06 1.38 8.08 -2.39 -0.02 1.36 16 39 H 0.11 4.53 8.06 -2.91 -0.02 4.50 16 40 H 0.17 2.72 8.06 -2.91 -0.02 2.70 16 41 H 0.19 1.28 8.06 -2.91 -0.02 1.25 16 42 H 0.17 2.36 8.06 -2.91 -0.02 2.34 16 43 H 0.13 4.48 6.85 -2.91 -0.02 4.46 16 44 H 0.29 15.05 8.31 -92.71 -0.77 14.28 16 45 H 0.11 4.41 8.06 -2.91 -0.02 4.38 16 Total: -1.00 -78.49 380.99 6.27 -72.23 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: 0.98 Total: 10.98 kcal Atomic # 6 Polarization: 18.80 SS G_CDS: 6.25 Total: 25.06 kcal Atomic # 7 Polarization: -90.46 SS G_CDS: -2.37 Total: -92.84 kcal Atomic # 8 Polarization: -64.83 SS G_CDS: -0.29 Total: -65.11 kcal Atomic # 14 Polarization: 47.99 SS G_CDS: 1.70 Total: 49.69 kcal Total: -78.49 6.27 -72.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006858735.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.838 kcal (2) G-P(sol) polarization free energy of solvation -78.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.226 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds