Wall clock time and date at job start Tue Mar 31 2020 06:23:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38143 * 120.35005 * 2 1 4 4 C 1.39654 * 118.50310 * 180.02562 * 3 2 1 5 5 N 1.38538 * 120.48881 * 180.02562 * 4 3 2 6 6 N 1.32912 * 119.03093 * 359.73238 * 4 3 2 7 7 C 1.32504 * 120.60907 * 0.53805 * 6 4 3 8 8 S 1.76197 * 119.18681 * 179.72290 * 7 6 4 9 9 C 1.80999 * 100.00030 * 359.73193 * 8 7 6 10 10 C 1.50703 * 109.47324 * 180.02562 * 9 8 7 11 11 O 1.21290 * 119.99775 * 0.02562 * 10 9 8 12 12 N 1.34781 * 120.00021 * 179.97438 * 10 9 8 13 13 C 1.46499 * 119.99786 * 179.97438 * 12 10 9 14 14 C 1.50701 * 109.46992 * 90.00095 * 13 12 10 15 15 H 1.07998 * 120.00129 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99861 * 179.97438 * 14 13 12 17 17 N 1.31510 * 119.99913 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99734 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47432 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.46890 * 120.00210 * 18 16 14 21 21 H 1.48501 * 109.47062 * 240.00257 * 18 16 14 22 22 C 1.40046 * 119.99661 * 0.02562 * 12 10 9 23 23 C 1.38809 * 120.07811 * 269.99283 * 22 12 10 24 24 C 1.38138 * 119.95787 * 179.97438 * 23 22 12 25 25 C 1.38290 * 120.10753 * 0.02562 * 24 23 22 26 26 C 1.38263 * 120.15820 * 0.02562 * 25 24 23 27 27 C 1.38311 * 120.04266 * 359.69903 * 26 25 24 28 28 F 1.35100 * 120.05556 * 180.29564 * 27 26 25 29 29 N 1.32468 * 120.34929 * 180.02562 * 2 1 3 30 30 H 1.09005 * 109.47338 * 269.98026 * 1 2 3 31 31 H 1.09006 * 109.47061 * 29.97713 * 1 2 3 32 32 H 1.09001 * 109.47461 * 149.97577 * 1 2 3 33 33 H 1.07997 * 120.75154 * 0.04182 * 3 2 1 34 34 H 0.97001 * 119.99223 * 0.02562 * 5 4 3 35 35 H 0.96997 * 120.00014 * 179.97438 * 5 4 3 36 36 H 1.09000 * 109.46909 * 60.00129 * 9 8 7 37 37 H 1.08999 * 109.47498 * 299.99866 * 9 8 7 38 38 H 1.09002 * 109.47391 * 330.00086 * 13 12 10 39 39 H 1.09001 * 109.46813 * 210.00142 * 13 12 10 40 40 H 0.97002 * 119.99768 * 179.97438 * 17 16 14 41 41 H 1.07999 * 120.02156 * 359.96273 * 23 22 12 42 42 H 1.07997 * 119.95013 * 180.02562 * 24 23 22 43 43 H 1.07998 * 119.91548 * 179.97438 * 25 24 23 44 44 H 1.07996 * 119.97929 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2050 1.1921 0.0000 4 6 3.6008 1.1471 -0.0005 5 7 4.3418 2.3176 0.0000 6 7 4.2080 -0.0352 0.0044 7 6 3.5018 -1.1564 -0.0010 8 16 4.3455 -2.7032 -0.0016 9 6 6.0609 -2.1257 -0.0021 10 6 6.9904 -3.3119 -0.0033 11 8 6.5375 -4.4371 -0.0043 12 7 8.3248 -3.1225 -0.0044 13 6 9.2283 -4.2757 -0.0051 14 6 9.5370 -4.6712 -1.4261 15 1 9.1038 -4.1186 -2.2467 16 6 10.3732 -5.7380 -1.6786 17 7 10.9011 -6.4106 -0.6794 18 14 10.7564 -6.2278 -3.4400 19 1 10.0437 -5.3184 -4.3730 20 1 12.2195 -6.1289 -3.6742 21 1 10.3110 -7.6251 -3.6733 22 6 8.8475 -1.8232 -0.0039 23 6 9.1062 -1.1769 -1.2048 24 6 9.6213 0.1048 -1.2014 25 6 9.8802 0.7452 -0.0034 26 6 9.6253 0.1054 1.1955 27 6 9.1043 -1.1758 1.1995 28 9 8.8495 -1.7990 2.3709 29 7 2.1763 -1.1431 -0.0005 30 1 -0.3634 -0.0004 1.0277 31 1 -0.3633 0.8902 -0.5135 32 1 -0.3634 -0.8898 -0.5142 33 1 1.6831 2.1376 0.0007 34 1 3.8913 3.1767 0.0011 35 1 5.3110 2.2781 0.0000 36 1 6.2416 -1.5230 0.8879 37 1 6.2410 -1.5226 -0.8921 38 1 8.7523 -5.1106 0.5092 39 1 10.1534 -4.0127 0.5080 40 1 11.4891 -7.1613 -0.8570 41 1 8.9050 -1.6760 -2.1413 42 1 9.8221 0.6077 -2.1359 43 1 10.2833 1.7471 -0.0044 44 1 9.8290 0.6080 2.1294 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000007048466.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:17 Heat of formation + Delta-G solvation = 3.307033 kcal Electronic energy + Delta-G solvation = -31481.880697 eV Core-core repulsion = 27054.302548 eV Total energy + Delta-G solvation = -4427.578148 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 376.111 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -48.63485 -40.89063 -39.82659 -38.21448 -35.91760 -35.04450 -33.94910 -32.78526 -30.88610 -30.53532 -30.10615 -29.46431 -28.36661 -26.80562 -24.66299 -22.94754 -22.91865 -22.50902 -22.36632 -19.47142 -18.47733 -18.35997 -17.36283 -16.73522 -16.71325 -16.31314 -16.02783 -15.76539 -15.67737 -15.48301 -15.42666 -15.15595 -14.85803 -14.75183 -14.29133 -13.94300 -13.84191 -13.45567 -13.31491 -13.12795 -12.83429 -12.67988 -12.55667 -12.16195 -12.10992 -11.95945 -11.85090 -11.41232 -11.20542 -11.04293 -10.94979 -10.68453 -10.31462 -10.22448 -10.15946 -9.75248 -9.55521 -9.36193 -8.82623 -8.79617 -8.51997 -8.42247 -8.08521 -7.62852 -6.09801 -4.15000 0.78916 1.20970 1.25044 1.25402 1.30536 2.12286 3.06820 3.16148 3.27677 3.35516 3.38270 3.63121 3.63765 3.65761 4.07395 4.38147 4.40174 4.53973 4.70074 4.85245 4.88589 4.97393 5.03302 5.12357 5.22702 5.25746 5.28683 5.29524 5.45236 5.48686 5.53988 5.62182 5.79868 6.07985 6.13017 6.14610 6.44288 6.46047 6.57211 6.76798 6.90105 7.04356 7.24510 7.36202 7.38163 7.84594 8.01051 8.11770 8.13796 8.67396 8.88786 9.49684 10.98923 Molecular weight = 376.11amu Principal moments of inertia in cm(-1) A = 0.009855 B = 0.003006 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2840.380842 B = 9313.874122 C =10822.186717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.214 3.786 3 C -0.310 4.310 4 C 0.454 3.546 5 N -0.837 5.837 6 N -0.589 5.589 7 C 0.331 3.669 8 S 0.095 5.905 9 C -0.146 4.146 10 C 0.532 3.468 11 O -0.509 6.509 12 N -0.554 5.554 13 C 0.251 3.749 14 C -0.528 4.528 15 H 0.060 0.940 16 C 0.063 3.937 17 N -0.892 5.892 18 Si 0.899 3.101 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.282 1.282 22 C 0.119 3.881 23 C -0.077 4.077 24 C -0.125 4.125 25 C -0.097 4.097 26 C -0.153 4.153 27 C 0.096 3.904 28 F -0.133 7.133 29 N -0.542 5.542 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.138 0.862 34 H 0.410 0.590 35 H 0.408 0.592 36 H 0.115 0.885 37 H 0.118 0.882 38 H 0.052 0.948 39 H 0.035 0.965 40 H 0.264 0.736 41 H 0.139 0.861 42 H 0.129 0.871 43 H 0.130 0.870 44 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.392 23.150 1.799 26.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.068 3.932 3 C -0.341 4.341 4 C 0.205 3.795 5 N -0.380 5.380 6 N -0.319 5.319 7 C -0.046 4.046 8 S 0.330 5.670 9 C -0.298 4.298 10 C 0.318 3.682 11 O -0.385 6.385 12 N -0.283 5.283 13 C 0.134 3.866 14 C -0.567 4.567 15 H 0.078 0.922 16 C -0.139 4.139 17 N -0.530 5.530 18 Si 0.727 3.273 19 H -0.197 1.197 20 H -0.209 1.209 21 H -0.207 1.207 22 C 0.027 3.973 23 C -0.097 4.097 24 C -0.144 4.144 25 C -0.115 4.115 26 C -0.172 4.172 27 C 0.075 3.925 28 F -0.111 7.111 29 N -0.264 5.264 30 H 0.103 0.897 31 H 0.097 0.903 32 H 0.102 0.898 33 H 0.156 0.844 34 H 0.241 0.759 35 H 0.238 0.762 36 H 0.133 0.867 37 H 0.137 0.863 38 H 0.070 0.930 39 H 0.053 0.947 40 H 0.074 0.926 41 H 0.157 0.843 42 H 0.147 0.853 43 H 0.148 0.852 44 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -12.446 20.213 1.901 23.814 hybrid contribution 0.812 2.254 -0.703 2.497 sum -11.634 22.467 1.198 25.329 Atomic orbital electron populations 1.20751 0.87926 1.03884 1.03558 1.21396 0.97118 0.87471 0.87219 1.21752 0.93311 1.00586 1.18499 1.18456 0.88450 0.86784 0.85826 1.42141 1.09853 1.04373 1.81680 1.68393 1.40071 0.97148 1.26254 1.25254 0.90343 0.97171 0.91784 1.86669 0.96336 0.95166 1.88787 1.23797 0.95467 1.02017 1.08547 1.19471 0.82402 0.89010 0.77348 1.90743 1.74902 1.24216 1.48589 1.45740 1.05545 1.05134 1.71931 1.19497 0.87347 0.81573 0.98206 1.21373 1.28626 1.14892 0.91788 0.92179 1.24920 0.95626 0.95812 0.97562 1.69941 1.31877 1.20440 1.30755 0.86421 0.77858 0.78683 0.84349 1.19707 1.20950 1.20750 1.17722 1.01174 0.86730 0.91681 1.21481 0.96298 0.94133 0.97773 1.21100 1.00144 0.94769 0.98364 1.20957 0.99139 0.99878 0.91494 1.20999 1.02751 0.93557 0.99883 1.18139 1.01389 0.91977 0.81038 1.91508 1.91753 1.82530 1.45350 1.68371 1.07082 1.29569 1.21417 0.89742 0.90343 0.89819 0.84386 0.75931 0.76228 0.86701 0.86331 0.93000 0.94687 0.92617 0.84322 0.85264 0.85250 0.84830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.75 10.21 36.00 0.37 -0.39 16 2 C 0.21 2.43 6.81 -82.35 -0.56 1.87 16 3 C -0.31 -3.03 9.70 -39.09 -0.38 -3.41 16 4 C 0.45 5.01 7.82 -154.84 -1.21 3.80 16 5 N -0.84 -5.75 9.06 31.23 0.28 -5.47 16 6 N -0.59 -8.26 9.17 -12.68 -0.12 -8.38 16 7 C 0.33 5.16 7.85 -90.88 -0.71 4.45 16 8 S 0.09 1.62 21.38 -107.50 -2.30 -0.67 16 9 C -0.15 -2.49 4.10 36.01 0.15 -2.34 16 10 C 0.53 11.44 7.66 -10.98 -0.08 11.35 16 11 O -0.51 -12.80 15.44 5.55 0.09 -12.71 16 12 N -0.55 -12.07 2.33 -114.66 -0.27 -12.33 16 13 C 0.25 6.61 5.15 -5.19 -0.03 6.59 16 14 C -0.53 -14.69 9.39 -34.44 -0.32 -15.01 16 15 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 16 C 0.06 1.79 5.46 -17.82 -0.10 1.70 16 17 N -0.89 -26.38 13.29 55.43 0.74 -25.64 16 18 Si 0.90 21.63 29.54 -169.99 -5.02 16.61 16 19 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 21 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 22 C 0.12 2.14 3.93 -83.59 -0.33 1.81 16 23 C -0.08 -1.19 9.97 -39.41 -0.39 -1.59 16 24 C -0.12 -1.45 10.04 -39.60 -0.40 -1.85 16 25 C -0.10 -1.01 10.04 -39.55 -0.40 -1.40 16 26 C -0.15 -1.88 10.02 -39.55 -0.40 -2.28 16 27 C 0.10 1.55 7.31 -39.26 -0.29 1.27 16 28 F -0.13 -2.40 17.08 2.25 0.04 -2.36 16 29 N -0.54 -8.02 10.33 -9.75 -0.10 -8.12 16 30 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.08 0.38 8.09 -51.93 -0.42 -0.04 16 32 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 34 H 0.41 1.52 8.84 -40.82 -0.36 1.16 16 35 H 0.41 2.63 8.95 -40.82 -0.37 2.27 16 36 H 0.11 1.86 8.06 -51.92 -0.42 1.44 16 37 H 0.12 1.87 8.07 -51.92 -0.42 1.46 16 38 H 0.05 1.53 7.42 -51.93 -0.39 1.14 16 39 H 0.04 0.96 8.05 -51.93 -0.42 0.54 16 40 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 41 H 0.14 2.22 8.06 -52.49 -0.42 1.79 16 42 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 43 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 44 H 0.13 1.33 8.06 -52.49 -0.42 0.90 16 LS Contribution 404.58 15.07 6.10 6.10 Total: -1.00 -35.24 404.58 -10.93 -46.18 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -5.29 Total: 2.24 kcal Atomic # 6 Polarization: 9.64 SS G_CDS: -5.08 Total: 4.56 kcal Atomic # 7 Polarization: -60.48 SS G_CDS: 0.54 Total: -59.94 kcal Atomic # 8 Polarization: -12.80 SS G_CDS: 0.09 Total: -12.71 kcal Atomic # 9 Polarization: -2.40 SS G_CDS: 0.04 Total: -2.36 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 16 Polarization: 1.62 SS G_CDS: -2.30 Total: -0.67 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -35.24 -10.93 -46.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007048466.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.486 kcal (2) G-P(sol) polarization free energy of solvation -35.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds