Wall clock time and date at job start Tue Mar 31 2020 06:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46498 * 119.99966 * 2 1 4 4 C 1.50702 * 109.47034 * 269.72167 * 3 2 1 5 5 H 1.08002 * 119.99777 * 0.02562 * 4 3 2 6 6 C 1.37877 * 120.00353 * 179.97438 * 4 3 2 7 7 N 1.31517 * 120.00260 * 180.02562 * 6 4 3 8 8 Si 1.86803 * 119.99621 * 0.02562 * 6 4 3 9 9 H 1.48497 * 109.46981 * 89.99978 * 8 6 4 10 10 H 1.48497 * 109.47028 * 209.99796 * 8 6 4 11 11 H 1.48500 * 109.47259 * 329.99830 * 8 6 4 12 12 C 1.39675 * 119.99622 * 179.72113 * 2 1 3 13 13 C 1.38915 * 120.06911 * 179.72206 * 12 2 1 14 14 C 1.38104 * 119.92020 * 179.76852 * 13 12 2 15 15 C 1.38288 * 120.07562 * 0.51354 * 14 13 12 16 16 C 1.50696 * 119.92777 * 179.72311 * 15 14 13 17 17 H 1.08998 * 109.99076 * 161.33021 * 16 15 14 18 18 N 1.47377 * 110.00038 * 40.01766 * 16 15 14 19 19 C 1.36942 * 119.89499 * 277.96455 * 18 16 15 20 20 N 1.36841 * 119.33619 * 150.06762 * 19 18 16 21 21 N 1.32184 * 121.32847 * 330.05347 * 19 18 16 22 22 C 1.35300 * 118.48064 * 3.05557 * 21 19 18 23 23 N 1.31190 * 129.11300 * 190.40340 * 22 21 19 24 24 C 1.34731 * 109.46807 * 179.69651 * 23 22 21 25 25 C 1.39984 * 131.63441 * 180.63919 * 24 23 22 26 26 C 1.38327 * 117.02267 * 179.97438 * 25 24 23 27 27 C 1.38396 * 121.97305 * 0.02562 * 26 25 24 28 28 C 1.38593 * 122.03178 * 0.02562 * 27 26 25 29 29 C 1.38956 * 117.17621 * 0.02562 * 28 27 26 30 30 N 1.36217 * 132.96472 * 179.78660 * 29 28 27 31 31 C 1.38288 * 120.15012 * 359.73830 * 15 14 13 32 32 C 1.38100 * 120.07490 * 0.02562 * 31 15 14 33 33 H 1.09001 * 109.47091 * 270.28179 * 1 2 3 34 34 H 1.09004 * 109.46622 * 30.27737 * 1 2 3 35 35 H 1.08997 * 109.47201 * 150.27440 * 1 2 3 36 36 H 1.08998 * 109.47268 * 29.71742 * 3 2 1 37 37 H 1.08996 * 109.47244 * 149.72315 * 3 2 1 38 38 H 0.96991 * 119.99993 * 180.02562 * 7 6 4 39 39 H 1.07991 * 120.04046 * 0.02562 * 13 12 2 40 40 H 1.07995 * 119.96395 * 180.25137 * 14 13 12 41 41 H 0.96999 * 120.05327 * 97.99152 * 18 16 15 42 42 H 0.97001 * 120.00427 * 0.02562 * 20 19 18 43 43 H 0.97008 * 119.99631 * 180.02562 * 20 19 18 44 44 H 1.08003 * 121.48981 * 359.97438 * 25 24 23 45 45 H 1.07995 * 119.01418 * 180.02562 * 26 25 24 46 46 H 1.07999 * 118.98310 * 180.02562 * 27 26 25 47 47 H 1.08009 * 121.41159 * 180.02562 * 28 27 26 48 48 H 1.07992 * 119.96441 * 180.02562 * 31 15 14 49 49 H 1.08000 * 120.04115 * 180.02562 * 32 31 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4547 1.7003 -1.4208 5 1 2.1068 1.0907 -2.2417 6 6 3.1330 2.8739 -1.6729 7 7 3.3570 3.2507 -2.9128 8 14 3.7340 3.9286 -0.2530 9 1 5.1060 3.5085 0.1295 10 1 3.7506 5.3543 -0.6680 11 1 2.8233 3.7615 0.9079 12 6 2.1634 -1.2097 0.0059 13 6 3.5525 -1.2115 0.0001 14 6 4.2399 -2.4092 0.0107 15 6 3.5468 -3.6059 0.0165 16 6 4.3002 -4.9110 0.0218 17 1 3.6463 -5.7174 0.3537 18 7 5.4713 -4.8134 0.9112 19 6 6.6280 -4.2386 0.4561 20 7 7.4508 -3.5964 1.3410 21 7 6.9658 -4.2919 -0.8207 22 6 6.1100 -4.8764 -1.6907 23 7 6.3031 -5.2073 -2.9454 24 6 5.1839 -5.7733 -3.4377 25 6 4.8857 -6.2991 -4.7003 26 6 3.6158 -6.8169 -4.8816 27 6 2.6740 -6.8198 -3.8675 28 6 2.9460 -6.3041 -2.6102 29 6 4.2144 -5.7765 -2.4014 30 7 4.8134 -5.1980 -1.3234 31 6 2.1640 -3.6077 0.0170 32 6 1.4703 -2.4136 0.0113 33 1 -0.3633 0.0051 1.0277 34 1 -0.3633 0.8875 -0.5182 35 1 -0.3633 -0.8924 -0.5095 36 1 1.6063 2.0296 0.5094 37 1 3.1478 1.1397 0.5181 38 1 3.8345 4.0761 -3.0901 39 1 4.0943 -0.2773 -0.0086 40 1 5.3198 -2.4114 0.0103 41 1 5.4231 -5.1560 1.8174 42 1 7.2126 -3.5519 2.2803 43 1 8.2723 -3.1855 1.0289 44 1 5.6144 -6.3004 -5.4974 45 1 3.3514 -7.2312 -5.8432 46 1 1.6970 -7.2369 -4.0619 47 1 2.2035 -6.3120 -1.8258 48 1 1.6258 -4.5440 0.0220 49 1 0.3903 -2.4156 0.0121 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000007126950.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:41 Heat of formation + Delta-G solvation = 173.727950 kcal Electronic energy + Delta-G solvation = -34257.830362 eV Core-core repulsion = 29993.784419 eV Total energy + Delta-G solvation = -4264.045943 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 376.171 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -42.23516 -39.76570 -38.89869 -36.70716 -36.34682 -34.66406 -33.14433 -32.69233 -32.48345 -30.83791 -30.24499 -29.52481 -28.46519 -28.20722 -26.29285 -24.55155 -23.43989 -22.65198 -22.19693 -21.59034 -21.43241 -20.08117 -19.11344 -18.66918 -18.19747 -17.32045 -17.02303 -16.58172 -16.55346 -16.06914 -15.60565 -15.52450 -15.08978 -14.54366 -14.42482 -14.21934 -14.12735 -13.85774 -13.81292 -13.65440 -13.45298 -13.04036 -13.01602 -12.48017 -12.25058 -11.92001 -11.79729 -11.75673 -11.67647 -11.57674 -11.44815 -11.12785 -10.73561 -10.59321 -10.36414 -10.33845 -10.24289 -9.80559 -9.70349 -9.51343 -9.43312 -9.15358 -8.73325 -8.61563 -7.95653 -7.27506 -6.70204 -6.20730 -4.22422 0.82187 1.56527 1.76611 1.78753 1.99420 2.25391 2.76489 3.15102 3.21706 3.23625 3.25023 3.51022 3.81365 4.12541 4.20987 4.25063 4.29973 4.46352 4.73389 4.78489 5.07749 5.10058 5.14933 5.17456 5.22987 5.43796 5.53071 5.56185 5.57568 5.70818 5.81814 5.82857 5.88336 5.94116 6.01455 6.15868 6.17375 6.23956 6.24359 6.50081 6.54884 6.56251 6.59847 6.67002 6.68312 6.76311 6.80529 6.86778 7.07402 7.10829 7.19547 7.32428 7.43334 7.82799 8.00684 8.09250 8.40027 8.43629 8.86101 9.37427 10.92276 Molecular weight = 376.17amu Principal moments of inertia in cm(-1) A = 0.008727 B = 0.002959 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3207.580360 B = 9460.086622 C =10055.335789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.603 5.603 3 C 0.220 3.780 4 C -0.541 4.541 5 H 0.077 0.923 6 C 0.075 3.925 7 N -0.890 5.890 8 Si 0.872 3.128 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.266 1.266 12 C 0.257 3.743 13 C -0.186 4.186 14 C -0.039 4.039 15 C -0.224 4.224 16 C 0.452 3.548 17 H 0.114 0.886 18 N -0.761 5.761 19 C 0.664 3.336 20 N -0.820 5.820 21 N -0.568 5.568 22 C 0.502 3.498 23 N -0.494 5.494 24 C 0.065 3.935 25 C -0.071 4.071 26 C -0.134 4.134 27 C -0.116 4.116 28 C -0.110 4.110 29 C 0.067 3.933 30 N -0.542 5.542 31 C -0.041 4.041 32 C -0.217 4.217 33 H 0.040 0.960 34 H 0.072 0.928 35 H 0.060 0.940 36 H 0.030 0.970 37 H 0.027 0.973 38 H 0.266 0.734 39 H 0.132 0.868 40 H 0.108 0.892 41 H 0.414 0.586 42 H 0.413 0.587 43 H 0.426 0.574 44 H 0.133 0.867 45 H 0.121 0.879 46 H 0.120 0.880 47 H 0.123 0.877 48 H 0.114 0.886 49 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.067 -19.661 11.960 23.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.307 5.307 3 C 0.099 3.901 4 C -0.579 4.579 5 H 0.095 0.905 6 C -0.129 4.129 7 N -0.527 5.527 8 Si 0.698 3.302 9 H -0.199 1.199 10 H -0.208 1.208 11 H -0.191 1.191 12 C 0.148 3.852 13 C -0.208 4.208 14 C -0.059 4.059 15 C -0.230 4.230 16 C 0.264 3.736 17 H 0.131 0.869 18 N -0.407 5.407 19 C 0.300 3.700 20 N -0.371 5.371 21 N -0.313 5.313 22 C 0.146 3.854 23 N -0.217 5.217 24 C -0.055 4.055 25 C -0.091 4.091 26 C -0.155 4.155 27 C -0.136 4.136 28 C -0.131 4.131 29 C -0.044 4.044 30 N -0.242 5.242 31 C -0.061 4.061 32 C -0.240 4.240 33 H 0.058 0.942 34 H 0.091 0.909 35 H 0.078 0.922 36 H 0.048 0.952 37 H 0.045 0.955 38 H 0.077 0.923 39 H 0.150 0.850 40 H 0.126 0.874 41 H 0.252 0.748 42 H 0.243 0.757 43 H 0.259 0.741 44 H 0.151 0.849 45 H 0.139 0.861 46 H 0.138 0.862 47 H 0.141 0.859 48 H 0.132 0.868 49 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 1.135 -18.891 10.814 21.797 hybrid contribution -0.847 0.580 1.896 2.156 sum 0.288 -18.311 12.710 22.292 Atomic orbital electron populations 1.21568 0.80602 1.02703 0.99981 1.46866 1.04754 1.04029 1.75060 1.19713 0.91855 0.80456 0.98097 1.21423 1.37557 1.07533 0.91393 0.90525 1.24898 0.95274 0.97201 0.95490 1.69894 1.40643 1.23508 1.18659 0.86921 0.79886 0.80391 0.82955 1.19864 1.20782 1.19065 1.17999 0.91406 0.86087 0.89661 1.20799 0.92665 0.98589 1.08772 1.20551 0.98605 0.91474 0.95285 1.19564 0.93907 0.93287 1.16231 1.19561 0.83081 0.95906 0.75062 0.86851 1.45182 1.11879 1.65736 1.17932 1.18852 0.80092 0.83054 0.87971 1.41783 1.26780 1.58810 1.09753 1.69567 1.27844 1.36362 0.97483 1.21212 0.79423 0.93756 0.90963 1.70255 1.25584 1.21460 1.04431 1.19223 0.89505 1.02133 0.94677 1.20569 0.96580 0.98221 0.93725 1.20792 0.93226 1.02298 0.99156 1.20745 0.99311 1.01084 0.92415 1.20194 0.92901 1.02028 0.98018 1.18570 0.96055 1.01713 0.88023 1.46870 1.13956 1.52423 1.10939 1.20380 0.92250 0.97154 0.96359 1.20531 0.99371 0.90957 1.13183 0.94165 0.90915 0.92171 0.95179 0.95543 0.92341 0.85026 0.87407 0.74819 0.75658 0.74100 0.84899 0.86129 0.86182 0.85948 0.86843 0.86082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.51 10.19 59.85 0.61 2.12 16 2 N -0.60 -11.92 2.99 -180.99 -0.54 -12.46 16 3 C 0.22 4.98 3.97 -5.19 -0.02 4.96 16 4 C -0.54 -14.86 9.94 -34.44 -0.34 -15.20 16 5 H 0.08 2.39 8.06 -52.49 -0.42 1.97 16 6 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 7 N -0.89 -26.88 13.96 55.43 0.77 -26.10 16 8 Si 0.87 20.35 27.47 -169.99 -4.67 15.68 16 9 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.27 -5.83 6.54 56.52 0.37 -5.46 16 12 C 0.26 4.81 6.55 -83.78 -0.55 4.26 16 13 C -0.19 -3.57 9.20 -39.38 -0.36 -3.93 16 14 C -0.04 -0.65 9.28 -39.61 -0.37 -1.02 16 15 C -0.22 -3.17 5.32 -104.59 -0.56 -3.72 16 16 C 0.45 5.31 4.21 -127.49 -0.54 4.77 16 17 H 0.11 1.00 8.01 -51.93 -0.42 0.58 16 18 N -0.76 -6.90 5.22 -58.65 -0.31 -7.21 16 19 C 0.66 7.34 6.15 -319.45 -1.97 5.38 16 20 N -0.82 -5.35 8.99 30.22 0.27 -5.08 16 21 N -0.57 -9.06 10.69 -14.01 -0.15 -9.21 16 22 C 0.50 9.11 8.72 -320.54 -2.79 6.32 16 23 N -0.49 -9.84 11.29 -11.43 -0.13 -9.97 16 24 C 0.06 1.16 7.12 -84.53 -0.60 0.56 16 25 C -0.07 -1.05 10.30 -38.89 -0.40 -1.45 16 26 C -0.13 -1.65 9.94 -39.49 -0.39 -2.05 16 27 C -0.12 -1.37 9.94 -39.39 -0.39 -1.77 16 28 C -0.11 -1.44 10.26 -39.18 -0.40 -1.84 16 29 C 0.07 1.08 6.98 -84.25 -0.59 0.49 16 30 N -0.54 -8.42 2.86 -112.14 -0.32 -8.74 16 31 C -0.04 -0.56 9.67 -39.61 -0.38 -0.94 16 32 C -0.22 -3.36 9.21 -39.38 -0.36 -3.72 16 33 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 35 H 0.06 0.85 6.20 -51.93 -0.32 0.53 16 36 H 0.03 0.67 7.13 -51.93 -0.37 0.30 16 37 H 0.03 0.60 5.65 -51.93 -0.29 0.30 16 38 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 39 H 0.13 2.78 6.16 -52.49 -0.32 2.45 16 40 H 0.11 1.78 5.66 -52.49 -0.30 1.49 16 41 H 0.41 2.09 8.95 -40.82 -0.37 1.73 16 42 H 0.41 1.30 8.94 -40.82 -0.37 0.93 16 43 H 0.43 2.60 8.93 -40.82 -0.36 2.23 16 44 H 0.13 1.74 8.06 -52.48 -0.42 1.32 16 45 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 46 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 47 H 0.12 1.28 8.06 -52.48 -0.42 0.85 16 48 H 0.11 1.15 8.03 -52.49 -0.42 0.73 16 49 H 0.12 1.64 6.14 -52.49 -0.32 1.31 16 LS Contribution 401.23 15.07 6.05 6.05 Total: -1.00 -37.65 401.23 -15.51 -53.16 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: -5.98 Total: 8.67 kcal Atomic # 6 Polarization: 5.71 SS G_CDS: -10.50 Total: -4.80 kcal Atomic # 7 Polarization: -78.36 SS G_CDS: -0.40 Total: -78.76 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -4.67 Total: 15.68 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -37.65 -15.51 -53.16 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007126950.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 226.884 kcal (2) G-P(sol) polarization free energy of solvation -37.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 189.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -15.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 173.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds