Wall clock time and date at job start Tue Mar 31 2020 06:49:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46501 * 120.00098 * 2 1 4 4 C 1.50700 * 109.46743 * 90.00098 * 3 2 1 5 5 H 1.07996 * 120.00425 * 0.02562 * 4 3 2 6 6 C 1.37879 * 119.99720 * 179.97438 * 4 3 2 7 7 N 1.31521 * 119.99959 * 0.02562 * 6 4 3 8 8 Si 1.86799 * 119.99952 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.47139 * 60.00228 * 8 6 4 10 10 H 1.48508 * 109.46701 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47104 * 299.99875 * 8 6 4 12 12 C 1.39674 * 119.99862 * 180.02562 * 2 1 3 13 13 C 1.38907 * 120.07357 * 179.71945 * 12 2 1 14 14 C 1.38113 * 119.92120 * 179.76818 * 13 12 2 15 15 C 1.38284 * 120.07511 * 0.50708 * 14 13 12 16 16 C 1.50700 * 119.92576 * 179.76446 * 15 14 13 17 17 H 1.09001 * 109.97908 * 201.27901 * 16 15 14 18 18 N 1.47355 * 109.99425 * 322.67858 * 16 15 14 19 19 C 1.36915 * 119.99621 * 82.46923 * 18 16 15 20 20 N 1.36839 * 119.29321 * 209.61397 * 19 18 16 21 21 N 1.32169 * 121.40975 * 29.61506 * 19 18 16 22 22 C 1.35285 * 118.49527 * 356.46453 * 21 19 18 23 23 N 1.31227 * 129.01468 * 168.93399 * 22 21 19 24 24 C 1.34734 * 109.44425 * 181.30047 * 23 22 21 25 25 C 1.39984 * 131.63930 * 179.67150 * 24 23 22 26 26 C 1.38329 * 117.02550 * 180.31794 * 25 24 23 27 27 C 1.38396 * 121.98054 * 0.02562 * 26 25 24 28 28 C 1.38595 * 122.02711 * 359.93696 * 27 26 25 29 29 C 1.38955 * 117.16767 * 0.02562 * 28 27 26 30 30 N 1.36217 * 132.94935 * 180.17438 * 29 28 27 31 31 C 1.38285 * 120.15015 * 359.75050 * 15 14 13 32 32 C 1.38102 * 120.07612 * 359.97438 * 31 15 14 33 33 H 1.09001 * 109.47060 * 270.00243 * 1 2 3 34 34 H 1.09004 * 109.47073 * 29.99732 * 1 2 3 35 35 H 1.09000 * 109.47212 * 149.99814 * 1 2 3 36 36 H 1.09000 * 109.46877 * 210.00112 * 3 2 1 37 37 H 1.09000 * 109.47251 * 330.00217 * 3 2 1 38 38 H 0.96994 * 119.99936 * 179.97438 * 7 6 4 39 39 H 1.07997 * 120.03926 * 0.02562 * 13 12 2 40 40 H 1.08000 * 119.95683 * 180.25610 * 14 13 12 41 41 H 0.97002 * 119.99799 * 262.44411 * 18 16 15 42 42 H 0.96996 * 119.99964 * 179.97438 * 20 19 18 43 43 H 0.96999 * 120.00322 * 359.97438 * 20 19 18 44 44 H 1.08000 * 121.49409 * 0.29555 * 25 24 23 45 45 H 1.07994 * 119.01374 * 180.02562 * 26 25 24 46 46 H 1.07995 * 118.98902 * 179.97438 * 27 26 25 47 47 H 1.07999 * 121.41719 * 180.02562 * 28 27 26 48 48 H 1.08004 * 119.96263 * 179.97438 * 31 15 14 49 49 H 1.08002 * 120.04099 * 180.02562 * 32 31 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7037 1.4209 5 1 2.0982 1.0957 2.2417 6 6 3.1270 2.8773 1.6728 7 7 3.5543 3.6175 0.6732 8 14 3.4390 3.4162 3.4340 9 1 4.2414 2.3809 4.1336 10 1 4.1825 4.7017 3.4339 11 1 2.1417 3.5941 4.1344 12 6 2.1634 -1.2096 -0.0005 13 6 3.5525 -1.2115 -0.0064 14 6 4.2398 -2.4094 -0.0021 15 6 3.5468 -3.6060 -0.0025 16 6 4.3002 -4.9112 -0.0032 17 1 3.6597 -5.7108 -0.3752 18 7 5.5057 -4.7966 -0.8428 19 6 6.6466 -4.2399 -0.3301 20 7 7.5079 -3.5861 -1.1687 21 7 6.9339 -4.3204 0.9575 22 6 6.0370 -4.9065 1.7835 23 7 6.1826 -5.2718 3.0354 24 6 5.0435 -5.8445 3.4709 25 6 4.6944 -6.3970 4.7089 26 6 3.4191 -6.9196 4.8268 27 6 2.5200 -6.9030 3.7748 28 6 2.8425 -6.3609 2.5407 29 6 4.1177 -5.8283 2.3954 30 7 4.7597 -5.2277 1.3549 31 6 2.1639 -3.6078 -0.0020 32 6 1.4703 -2.4136 -0.0006 33 1 -0.3633 0.0000 1.0277 34 1 -0.3633 0.8900 -0.5138 35 1 -0.3634 -0.8900 -0.5139 36 1 3.1500 1.1383 -0.5139 37 1 1.6085 2.0284 -0.5138 38 1 4.0312 4.4433 0.8504 39 1 4.0943 -0.2773 -0.0102 40 1 5.3198 -2.4114 -0.0025 41 1 5.4910 -5.1160 -1.7586 42 1 8.3190 -3.1875 -0.8163 43 1 7.3074 -3.5212 -2.1155 44 1 5.3899 -6.4150 5.5349 45 1 3.1158 -7.3536 5.7680 46 1 1.5365 -7.3249 3.9201 47 1 2.1330 -6.3528 1.7266 48 1 1.6257 -4.5442 -0.0028 49 1 0.3903 -2.4156 0.0001 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000007126959.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:46 Heat of formation + Delta-G solvation = 168.275952 kcal Electronic energy + Delta-G solvation = -34230.688094 eV Core-core repulsion = 29966.405734 eV Total energy + Delta-G solvation = -4264.282360 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 376.171 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -42.23419 -39.74040 -38.84335 -36.71636 -36.26735 -34.62369 -33.13607 -32.76606 -32.48664 -30.74619 -30.16521 -29.45497 -28.23326 -27.94157 -26.20533 -24.54375 -23.45090 -22.78970 -22.19881 -21.63752 -21.45950 -20.11133 -19.09926 -18.65828 -18.18607 -17.27394 -16.64474 -16.56364 -16.50778 -16.00698 -15.55694 -15.51894 -15.05859 -14.54361 -14.37595 -14.20045 -14.09461 -13.87780 -13.81197 -13.70662 -13.40350 -12.99583 -12.85894 -12.22245 -12.17324 -11.89047 -11.81016 -11.67922 -11.56942 -11.46582 -11.35493 -11.01528 -10.77837 -10.58078 -10.40289 -10.26770 -10.08421 -9.92231 -9.78211 -9.51575 -9.42896 -9.08044 -8.58817 -8.54669 -7.96904 -7.27526 -6.70616 -6.13529 -4.25676 0.82024 1.57970 1.78510 1.84329 1.99373 2.26996 2.78278 3.26401 3.26921 3.30455 3.35521 3.50831 3.92715 4.11474 4.24613 4.32165 4.36422 4.48402 4.75777 4.79180 5.08813 5.14067 5.15784 5.20056 5.26683 5.43313 5.52803 5.56273 5.59170 5.75554 5.83002 5.87946 5.92141 6.02276 6.08743 6.17782 6.18689 6.24936 6.33092 6.54096 6.59653 6.64661 6.66673 6.75235 6.75787 6.85270 7.01110 7.08871 7.09593 7.16876 7.28846 7.33570 7.72228 8.00910 8.01863 8.08082 8.24176 8.43907 8.81988 9.42050 10.87903 Molecular weight = 376.17amu Principal moments of inertia in cm(-1) A = 0.008042 B = 0.002981 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3480.989416 B = 9389.493777 C = 9767.695648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.608 5.608 3 C 0.248 3.752 4 C -0.536 4.536 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.895 5.895 8 Si 0.896 3.104 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.276 1.276 12 C 0.258 3.742 13 C -0.186 4.186 14 C -0.039 4.039 15 C -0.228 4.228 16 C 0.453 3.547 17 H 0.113 0.887 18 N -0.761 5.761 19 C 0.666 3.334 20 N -0.820 5.820 21 N -0.569 5.569 22 C 0.504 3.496 23 N -0.496 5.496 24 C 0.065 3.935 25 C -0.072 4.072 26 C -0.134 4.134 27 C -0.117 4.117 28 C -0.110 4.110 29 C 0.066 3.934 30 N -0.542 5.542 31 C -0.041 4.041 32 C -0.221 4.221 33 H 0.045 0.955 34 H 0.064 0.936 35 H 0.055 0.945 36 H 0.036 0.964 37 H 0.033 0.967 38 H 0.266 0.734 39 H 0.135 0.865 40 H 0.107 0.893 41 H 0.414 0.586 42 H 0.426 0.574 43 H 0.413 0.587 44 H 0.133 0.867 45 H 0.120 0.880 46 H 0.120 0.880 47 H 0.123 0.877 48 H 0.112 0.888 49 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.230 -20.037 -7.325 21.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.311 5.311 3 C 0.129 3.871 4 C -0.575 4.575 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.533 5.533 8 Si 0.723 3.277 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.201 1.201 12 C 0.148 3.852 13 C -0.209 4.209 14 C -0.059 4.059 15 C -0.234 4.234 16 C 0.264 3.736 17 H 0.131 0.869 18 N -0.407 5.407 19 C 0.302 3.698 20 N -0.371 5.371 21 N -0.315 5.315 22 C 0.148 3.852 23 N -0.220 5.220 24 C -0.055 4.055 25 C -0.092 4.092 26 C -0.155 4.155 27 C -0.137 4.137 28 C -0.131 4.131 29 C -0.044 4.044 30 N -0.242 5.242 31 C -0.061 4.061 32 C -0.244 4.244 33 H 0.063 0.937 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.054 0.946 37 H 0.051 0.949 38 H 0.075 0.925 39 H 0.153 0.847 40 H 0.125 0.875 41 H 0.252 0.748 42 H 0.259 0.741 43 H 0.244 0.756 44 H 0.150 0.850 45 H 0.138 0.862 46 H 0.138 0.862 47 H 0.141 0.859 48 H 0.130 0.870 49 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 0.954 -19.274 -6.306 20.301 hybrid contribution -0.982 0.346 -0.429 1.125 sum -0.027 -18.928 -6.734 20.090 Atomic orbital electron populations 1.21534 0.81082 1.01265 1.00837 1.47255 1.04738 1.04734 1.74377 1.19360 0.92041 0.78454 0.97268 1.21494 1.36862 1.06663 0.92441 0.92295 1.24936 0.95144 0.96160 0.97561 1.69908 1.38121 1.14398 1.30912 0.86579 0.78587 0.77996 0.84536 1.19928 1.21026 1.20122 1.18022 0.91457 0.86156 0.89518 1.20860 0.92723 0.98655 1.08654 1.20540 0.98504 0.91471 0.95434 1.19538 0.93893 0.93231 1.16724 1.19568 0.82749 0.95753 0.75494 0.86903 1.45163 1.11102 1.66943 1.17447 1.18835 0.80163 0.82992 0.87819 1.41790 1.26471 1.58542 1.10252 1.69553 1.27023 1.36488 0.98391 1.21213 0.79845 0.93562 0.90554 1.70285 1.24446 1.21124 1.06115 1.19229 0.89725 1.02051 0.94501 1.20559 0.96233 0.98204 0.94239 1.20785 0.93478 1.02288 0.98935 1.20740 0.99450 1.01067 0.92411 1.20199 0.92685 1.01830 0.98372 1.18575 0.95781 1.01437 0.88635 1.46881 1.14597 1.51411 1.11274 1.20359 0.92255 0.97100 0.96404 1.20530 0.99296 0.91050 1.13564 0.93682 0.91707 0.92614 0.94645 0.94930 0.92481 0.84719 0.87520 0.74801 0.74085 0.75606 0.84952 0.86175 0.86205 0.85939 0.87007 0.86223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.59 10.23 59.85 0.61 2.20 16 2 N -0.61 -12.36 2.99 -180.99 -0.54 -12.90 16 3 C 0.25 6.02 4.96 -5.19 -0.03 6.00 16 4 C -0.54 -14.55 9.39 -34.44 -0.32 -14.88 16 5 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 6 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 7 N -0.89 -25.33 13.29 55.43 0.74 -24.59 16 8 Si 0.90 21.61 29.54 -169.99 -5.02 16.59 16 9 H -0.27 -6.73 7.11 56.52 0.40 -6.32 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 C 0.26 4.93 6.55 -83.79 -0.55 4.38 16 13 C -0.19 -3.65 9.21 -39.38 -0.36 -4.02 16 14 C -0.04 -0.67 9.27 -39.61 -0.37 -1.03 16 15 C -0.23 -3.27 5.35 -104.59 -0.56 -3.83 16 16 C 0.45 5.39 4.20 -127.50 -0.54 4.86 16 17 H 0.11 1.02 8.04 -51.93 -0.42 0.60 16 18 N -0.76 -7.07 5.17 -58.67 -0.30 -7.38 16 19 C 0.67 7.48 6.15 -319.52 -1.96 5.52 16 20 N -0.82 -5.56 8.98 30.21 0.27 -5.29 16 21 N -0.57 -9.13 10.71 -14.03 -0.15 -9.28 16 22 C 0.50 9.13 8.72 -320.58 -2.79 6.34 16 23 N -0.50 -9.81 11.29 -11.43 -0.13 -9.94 16 24 C 0.07 1.15 7.12 -84.53 -0.60 0.55 16 25 C -0.07 -1.05 10.30 -38.89 -0.40 -1.45 16 26 C -0.13 -1.63 9.94 -39.49 -0.39 -2.02 16 27 C -0.12 -1.36 9.94 -39.39 -0.39 -1.76 16 28 C -0.11 -1.42 10.26 -39.18 -0.40 -1.82 16 29 C 0.07 1.06 6.97 -84.25 -0.59 0.47 16 30 N -0.54 -8.41 2.86 -112.15 -0.32 -8.73 16 31 C -0.04 -0.57 9.67 -39.61 -0.38 -0.95 16 32 C -0.22 -3.50 9.21 -39.38 -0.36 -3.86 16 33 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.06 1.01 7.89 -51.93 -0.41 0.60 16 35 H 0.06 0.75 6.20 -51.93 -0.32 0.42 16 36 H 0.04 0.91 6.19 -51.93 -0.32 0.58 16 37 H 0.03 0.83 7.89 -51.93 -0.41 0.42 16 38 H 0.27 7.16 8.31 -40.82 -0.34 6.83 16 39 H 0.14 2.96 6.14 -52.49 -0.32 2.64 16 40 H 0.11 1.77 5.63 -52.49 -0.30 1.47 16 41 H 0.41 2.21 8.95 -40.82 -0.37 1.84 16 42 H 0.43 2.70 8.93 -40.82 -0.36 2.33 16 43 H 0.41 1.44 8.94 -40.82 -0.37 1.07 16 44 H 0.13 1.70 8.06 -52.49 -0.42 1.28 16 45 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 46 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 47 H 0.12 1.27 8.06 -52.49 -0.42 0.84 16 48 H 0.11 1.18 8.05 -52.48 -0.42 0.75 16 49 H 0.12 1.67 6.14 -52.49 -0.32 1.34 16 LS Contribution 404.54 15.07 6.10 6.10 Total: -1.00 -36.08 404.54 -15.85 -51.92 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: -6.00 Total: 7.12 kcal Atomic # 6 Polarization: 6.86 SS G_CDS: -10.49 Total: -3.62 kcal Atomic # 7 Polarization: -77.67 SS G_CDS: -0.44 Total: -78.11 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -36.08 -15.85 -51.92 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007126959.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 220.201 kcal (2) G-P(sol) polarization free energy of solvation -36.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 184.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -15.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.925 kcal (6) G-S(sol) free energy of system = (1) + (5) 168.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds