Wall clock time and date at job start Tue Mar 31 2020 06:13:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00381 * 2 1 4 4 H 1.48499 * 109.46914 * 270.00592 * 3 2 1 5 5 H 1.48505 * 109.46871 * 29.99664 * 3 2 1 6 6 H 1.48492 * 109.47645 * 150.00216 * 3 2 1 7 7 C 1.37877 * 120.00016 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00192 * 359.97438 * 7 2 1 9 9 C 1.50709 * 120.00249 * 179.97438 * 7 2 1 10 10 N 1.46494 * 109.46997 * 179.97438 * 9 7 2 11 11 C 1.36801 * 124.94903 * 265.29669 * 10 9 7 12 12 C 1.35417 * 109.72676 * 180.18303 * 11 10 9 13 13 C 1.48372 * 126.63491 * 179.83338 * 12 11 10 14 14 C 1.34824 * 122.28241 * 359.69310 * 13 12 11 15 15 S 1.76220 * 108.20919 * 179.72834 * 14 13 12 16 16 C 1.76119 * 90.00117 * 0.02562 * 15 14 13 17 17 C 1.47796 * 125.32741 * 180.02562 * 16 15 14 18 18 C 1.39608 * 120.08783 * 179.74738 * 17 16 15 19 19 C 1.37830 * 119.91016 * 179.78544 * 18 17 16 20 20 C 1.38874 * 120.09166 * 0.46997 * 19 18 17 21 21 O 1.35858 * 119.91585 * 179.76038 * 20 19 18 22 22 C 1.38883 * 120.17492 * 359.78451 * 20 19 18 23 23 C 1.37832 * 120.08126 * 359.97438 * 22 20 19 24 24 N 1.30118 * 109.34142 * 0.02562 * 16 15 14 25 25 C 1.47131 * 106.73208 * 359.57696 * 12 11 10 26 26 C 1.39448 * 133.95120 * 180.27557 * 25 12 11 27 27 C 1.36676 * 119.78920 * 179.97438 * 26 25 12 28 28 C 1.38814 * 120.48624 * 0.02562 * 27 26 25 29 29 C 1.37742 * 120.64366 * 359.97438 * 28 27 26 30 30 C 1.37753 * 124.95482 * 85.00593 * 10 9 7 31 31 H 0.96998 * 119.99405 * 359.97438 * 1 2 3 32 32 H 1.08998 * 109.46748 * 60.00040 * 9 7 2 33 33 H 1.08996 * 109.46734 * 300.00129 * 9 7 2 34 34 H 1.07991 * 125.13716 * 0.02940 * 11 10 9 35 35 H 1.07998 * 125.89221 * 359.74952 * 14 13 12 36 36 H 1.07998 * 120.04244 * 0.02562 * 18 17 16 37 37 H 1.08004 * 119.95464 * 180.20345 * 19 18 17 38 38 H 0.96697 * 113.99681 * 270.02303 * 21 20 19 39 39 H 1.07991 * 119.96011 * 179.97438 * 22 20 19 40 40 H 1.08001 * 120.04264 * 180.02562 * 23 22 20 41 41 H 1.07999 * 120.10703 * 359.96007 * 26 25 12 42 42 H 1.07998 * 119.76084 * 179.97438 * 27 26 25 43 43 H 1.08001 * 119.67485 * 179.97438 * 28 27 26 44 44 H 1.08008 * 120.10731 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4402 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1941 -0.0011 10 7 3.9998 -2.5753 -0.0010 11 6 4.3481 -3.2833 1.1166 12 6 4.7598 -4.5237 0.7620 13 6 5.2245 -5.5970 1.6749 14 6 5.2893 -5.4279 3.0110 15 16 5.8775 -6.9264 3.7278 16 6 5.9825 -7.6514 2.1261 17 6 6.4354 -9.0287 1.8395 18 6 6.4708 -9.4943 0.5238 19 6 6.8980 -10.7779 0.2602 20 6 7.2837 -11.6111 1.3021 21 8 7.6996 -12.8774 1.0387 22 6 7.2450 -11.1536 2.6128 23 6 6.8237 -9.8696 2.8841 24 7 5.5989 -6.7846 1.2348 25 6 4.6513 -4.6033 -0.7032 26 6 4.9164 -5.6012 -1.6405 27 6 4.7061 -5.3581 -2.9689 28 6 4.2309 -4.1246 -3.3926 29 6 3.9628 -3.1255 -2.4831 30 6 4.1698 -3.3524 -1.1256 31 1 -0.4849 0.8401 0.0004 32 1 3.8752 -0.6805 0.8888 33 1 3.8745 -0.6801 -0.8911 34 1 4.3040 -2.9086 2.1284 35 1 5.0259 -4.5293 3.5490 36 1 6.1675 -8.8482 -0.2867 37 1 6.9288 -11.1377 -0.7577 38 1 6.9887 -13.5328 1.0387 39 1 7.5453 -11.8046 3.4204 40 1 6.7942 -9.5142 3.9036 41 1 5.2868 -6.5629 -1.3177 42 1 4.9119 -6.1312 -3.6944 43 1 4.0699 -3.9466 -4.4456 44 1 3.5937 -2.1688 -2.8224 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000007321512.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:46 Heat of formation + Delta-G solvation = 88.631464 kcal Electronic energy + Delta-G solvation = -29354.087240 eV Core-core repulsion = 25328.685510 eV Total energy + Delta-G solvation = -4025.401730 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 376.099 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.86116 -40.11859 -39.12285 -37.05994 -36.56175 -33.63150 -32.42865 -31.43806 -31.24355 -29.87221 -29.33577 -28.07516 -26.96913 -25.18197 -23.34362 -23.09876 -22.53274 -21.73418 -20.98607 -19.92481 -18.82413 -18.78363 -17.93847 -17.20715 -16.46135 -16.17038 -15.87710 -15.74628 -15.57224 -14.95352 -14.74143 -14.69976 -14.40421 -13.88214 -13.85726 -13.63576 -13.44442 -13.29397 -13.05252 -12.71036 -12.63195 -12.36480 -12.30430 -12.11150 -12.08427 -11.61694 -11.49712 -11.11467 -10.95794 -10.84658 -10.78971 -10.36339 -10.26819 -9.93983 -9.68955 -9.64211 -9.40972 -9.37455 -8.90142 -8.86490 -8.23058 -7.63104 -6.84526 -6.35204 -4.39943 0.09108 1.00545 1.18379 1.28373 1.67657 1.71692 2.14581 2.60443 3.07330 3.13616 3.16106 3.32293 3.50658 3.75143 3.80205 3.89038 4.12781 4.49668 4.55491 4.59017 4.84403 4.93648 4.97738 5.11635 5.17928 5.27459 5.35994 5.39214 5.43745 5.54599 5.64891 5.71741 5.82188 5.95048 6.00238 6.05697 6.12627 6.14299 6.25979 6.35983 6.37001 6.38566 6.44678 6.58867 6.98113 7.11623 7.18796 7.23918 7.24680 7.38009 7.77346 7.81185 7.89417 8.21961 8.70165 9.19909 10.76963 Molecular weight = 376.10amu Principal moments of inertia in cm(-1) A = 0.014438 B = 0.002153 C = 0.001931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.923837 B =13000.748091 C =14499.820651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.080 3.920 3 Si 0.873 3.127 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.548 4.548 8 H 0.082 0.918 9 C 0.207 3.793 10 N -0.441 5.441 11 C 0.108 3.892 12 C -0.155 4.155 13 C 0.180 3.820 14 C -0.262 4.262 15 S 0.069 5.931 16 C 0.111 3.889 17 C -0.027 4.027 18 C -0.055 4.055 19 C -0.145 4.145 20 C 0.116 3.884 21 O -0.499 6.499 22 C -0.144 4.144 23 C -0.082 4.082 24 N -0.446 5.446 25 C -0.082 4.082 26 C -0.069 4.069 27 C -0.156 4.156 28 C -0.114 4.114 29 C -0.111 4.111 30 C 0.103 3.897 31 H 0.269 0.731 32 H 0.046 0.954 33 H 0.040 0.960 34 H 0.166 0.834 35 H 0.178 0.822 36 H 0.142 0.858 37 H 0.135 0.865 38 H 0.392 0.608 39 H 0.134 0.866 40 H 0.130 0.870 41 H 0.122 0.878 42 H 0.113 0.887 43 H 0.117 0.883 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.110 -19.511 4.369 24.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.125 4.125 3 Si 0.699 3.301 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.585 4.585 8 H 0.100 0.900 9 C 0.087 3.913 10 N -0.117 5.117 11 C -0.026 4.026 12 C -0.166 4.166 13 C 0.050 3.950 14 C -0.401 4.401 15 S 0.325 5.675 16 C -0.164 4.164 17 C -0.031 4.031 18 C -0.076 4.076 19 C -0.164 4.164 20 C 0.070 3.930 21 O -0.310 6.310 22 C -0.163 4.163 23 C -0.103 4.103 24 N -0.160 5.160 25 C -0.087 4.087 26 C -0.088 4.088 27 C -0.175 4.175 28 C -0.134 4.134 29 C -0.131 4.131 30 C -0.004 4.004 31 H 0.080 0.920 32 H 0.064 0.936 33 H 0.058 0.942 34 H 0.183 0.817 35 H 0.195 0.805 36 H 0.160 0.840 37 H 0.153 0.847 38 H 0.249 0.751 39 H 0.152 0.848 40 H 0.148 0.852 41 H 0.140 0.860 42 H 0.131 0.869 43 H 0.135 0.865 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 14.544 -19.145 4.861 24.529 hybrid contribution -0.650 1.577 -0.327 1.737 sum 13.894 -17.568 4.534 22.853 Atomic orbital electron populations 1.69876 1.06189 1.27479 1.48413 1.24841 0.94822 0.98884 0.93961 0.86901 0.80298 0.83768 0.79119 1.19624 1.20495 1.18942 1.21205 0.88042 0.95571 1.53731 0.89981 1.20116 0.96873 0.75616 0.98662 1.44377 1.50438 1.13284 1.03588 1.21712 0.98067 0.90903 0.91910 1.17746 1.15625 0.92628 0.90566 1.17840 0.97687 0.89935 0.89579 1.26717 1.13710 1.02581 0.97044 1.84593 1.63162 1.07318 1.12435 1.25595 1.03127 0.97167 0.90560 1.17867 1.02044 0.89008 0.94212 1.21227 0.95549 0.94885 0.95964 1.21421 1.00706 0.94509 0.99744 1.18632 0.96622 0.85800 0.91934 1.84805 1.37450 1.15510 1.93249 1.21257 1.02073 0.96583 0.96346 1.21033 0.97681 0.93116 0.98449 1.66407 1.13025 1.01473 1.35051 1.18824 1.04362 0.93686 0.91836 1.20215 0.98873 0.97985 0.91683 1.20525 1.04267 0.97293 0.95429 1.20693 1.00915 0.93265 0.98492 1.20140 1.03007 1.00351 0.89601 1.18255 1.02288 0.90924 0.88896 0.92046 0.93590 0.94227 0.81698 0.80451 0.83987 0.84691 0.75127 0.84793 0.85227 0.86042 0.86873 0.86456 0.86048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.60 13.96 55.43 0.77 -24.82 16 2 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16 3 Si 0.87 19.54 27.47 -169.99 -4.67 14.87 16 4 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 5 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 6 H -0.26 -5.57 6.54 56.52 0.37 -5.20 16 7 C -0.55 -14.61 9.94 -34.44 -0.34 -14.96 16 8 H 0.08 2.49 8.06 -52.49 -0.42 2.07 16 9 C 0.21 4.61 4.81 -5.19 -0.02 4.59 16 10 N -0.44 -9.23 2.76 -115.40 -0.32 -9.55 16 11 C 0.11 1.99 10.82 -16.34 -0.18 1.82 16 12 C -0.16 -2.85 6.27 -103.12 -0.65 -3.50 16 13 C 0.18 2.92 6.66 -84.80 -0.57 2.36 16 14 C -0.26 -3.55 10.80 29.52 0.32 -3.23 16 15 S 0.07 0.78 22.36 -107.50 -2.40 -1.62 16 16 C 0.11 1.46 7.33 -14.37 -0.11 1.35 16 17 C -0.03 -0.30 5.87 -104.96 -0.62 -0.92 16 18 C -0.05 -0.57 9.67 -39.22 -0.38 -0.95 16 19 C -0.15 -1.26 9.97 -39.50 -0.39 -1.66 16 20 C 0.12 0.96 6.71 -39.11 -0.26 0.69 16 21 O -0.50 -3.49 13.49 -19.30 -0.26 -3.75 16 22 C -0.14 -1.13 9.97 -39.49 -0.39 -1.53 16 23 C -0.08 -0.73 9.59 -39.22 -0.38 -1.11 16 24 N -0.45 -6.94 9.19 -7.93 -0.07 -7.01 16 25 C -0.08 -1.60 6.29 -104.97 -0.66 -2.26 16 26 C -0.07 -1.19 9.86 -39.70 -0.39 -1.58 16 27 C -0.16 -2.44 9.98 -39.93 -0.40 -2.84 16 28 C -0.11 -1.86 10.01 -39.55 -0.40 -2.26 16 29 C -0.11 -2.11 9.99 -39.41 -0.39 -2.51 16 30 C 0.10 2.14 6.80 -83.99 -0.57 1.56 16 31 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 32 H 0.05 0.97 7.17 -51.93 -0.37 0.60 16 33 H 0.04 0.86 7.57 -51.93 -0.39 0.47 16 34 H 0.17 2.50 7.63 -52.49 -0.40 2.10 16 35 H 0.18 2.03 7.60 -52.49 -0.40 1.63 16 36 H 0.14 1.52 7.81 -52.49 -0.41 1.11 16 37 H 0.14 0.95 8.06 -52.48 -0.42 0.52 16 38 H 0.39 0.84 9.06 45.56 0.41 1.25 16 39 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 40 H 0.13 0.96 7.28 -52.49 -0.38 0.57 16 41 H 0.12 1.94 7.38 -52.49 -0.39 1.55 16 42 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 43 H 0.12 1.57 8.06 -52.49 -0.42 1.15 16 44 H 0.12 2.29 8.06 -52.48 -0.42 1.87 16 LS Contribution 394.96 15.07 5.95 5.95 Total: -1.00 -32.34 394.96 -11.91 -44.24 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -4.04 Total: 6.56 kcal Atomic # 6 Polarization: -18.00 SS G_CDS: -6.87 Total: -24.87 kcal Atomic # 7 Polarization: -41.77 SS G_CDS: 0.38 Total: -41.38 kcal Atomic # 8 Polarization: -3.49 SS G_CDS: -0.26 Total: -3.75 kcal Atomic # 14 Polarization: 19.54 SS G_CDS: -4.67 Total: 14.87 kcal Atomic # 16 Polarization: 0.78 SS G_CDS: -2.40 Total: -1.62 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -32.34 -11.91 -44.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007321512.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.873 kcal (2) G-P(sol) polarization free energy of solvation -32.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds