Wall clock time and date at job start Tue Mar 31 2020 06:13:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00381 * 2 1 4 4 H 1.48499 * 109.46914 * 270.00592 * 3 2 1 5 5 H 1.48505 * 109.46871 * 29.99664 * 3 2 1 6 6 H 1.48492 * 109.47645 * 150.00216 * 3 2 1 7 7 C 1.37877 * 120.00016 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00192 * 359.97438 * 7 2 1 9 9 C 1.50709 * 120.00249 * 179.97438 * 7 2 1 10 10 N 1.46494 * 109.46997 * 179.97438 * 9 7 2 11 11 C 1.36801 * 124.94903 * 265.29669 * 10 9 7 12 12 C 1.35417 * 109.72676 * 180.18303 * 11 10 9 13 13 C 1.48372 * 126.63491 * 179.83338 * 12 11 10 14 14 C 1.34824 * 122.28241 * 359.69310 * 13 12 11 15 15 S 1.76220 * 108.20919 * 179.72834 * 14 13 12 16 16 C 1.76119 * 90.00117 * 0.02562 * 15 14 13 17 17 C 1.47796 * 125.32741 * 180.02562 * 16 15 14 18 18 C 1.39608 * 120.08783 * 179.74738 * 17 16 15 19 19 C 1.37830 * 119.91016 * 179.78544 * 18 17 16 20 20 C 1.38874 * 120.09166 * 0.46997 * 19 18 17 21 21 O 1.35858 * 119.91585 * 179.76038 * 20 19 18 22 22 C 1.38883 * 120.17492 * 359.78451 * 20 19 18 23 23 C 1.37832 * 120.08126 * 359.97438 * 22 20 19 24 24 N 1.30118 * 109.34142 * 0.02562 * 16 15 14 25 25 C 1.47131 * 106.73208 * 359.57696 * 12 11 10 26 26 C 1.39448 * 133.95120 * 180.27557 * 25 12 11 27 27 C 1.36676 * 119.78920 * 179.97438 * 26 25 12 28 28 C 1.38814 * 120.48624 * 0.02562 * 27 26 25 29 29 C 1.37742 * 120.64366 * 359.97438 * 28 27 26 30 30 C 1.37753 * 124.95482 * 85.00593 * 10 9 7 31 31 H 0.96998 * 119.99405 * 359.97438 * 1 2 3 32 32 H 1.08998 * 109.46748 * 60.00040 * 9 7 2 33 33 H 1.08996 * 109.46734 * 300.00129 * 9 7 2 34 34 H 1.07991 * 125.13716 * 0.02940 * 11 10 9 35 35 H 1.07998 * 125.89221 * 359.74952 * 14 13 12 36 36 H 1.07998 * 120.04244 * 0.02562 * 18 17 16 37 37 H 1.08004 * 119.95464 * 180.20345 * 19 18 17 38 38 H 0.96697 * 113.99681 * 270.02303 * 21 20 19 39 39 H 1.07991 * 119.96011 * 179.97438 * 22 20 19 40 40 H 1.08001 * 120.04264 * 180.02562 * 23 22 20 41 41 H 1.07999 * 120.10703 * 359.96007 * 26 25 12 42 42 H 1.07998 * 119.76084 * 179.97438 * 27 26 25 43 43 H 1.08001 * 119.67485 * 179.97438 * 28 27 26 44 44 H 1.08008 * 120.10731 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4402 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1941 -0.0011 10 7 3.9998 -2.5753 -0.0010 11 6 4.3481 -3.2833 1.1166 12 6 4.7598 -4.5237 0.7620 13 6 5.2245 -5.5970 1.6749 14 6 5.2893 -5.4279 3.0110 15 16 5.8775 -6.9264 3.7278 16 6 5.9825 -7.6514 2.1261 17 6 6.4354 -9.0287 1.8395 18 6 6.4708 -9.4943 0.5238 19 6 6.8980 -10.7779 0.2602 20 6 7.2837 -11.6111 1.3021 21 8 7.6996 -12.8774 1.0387 22 6 7.2450 -11.1536 2.6128 23 6 6.8237 -9.8696 2.8841 24 7 5.5989 -6.7846 1.2348 25 6 4.6513 -4.6033 -0.7032 26 6 4.9164 -5.6012 -1.6405 27 6 4.7061 -5.3581 -2.9689 28 6 4.2309 -4.1246 -3.3926 29 6 3.9628 -3.1255 -2.4831 30 6 4.1698 -3.3524 -1.1256 31 1 -0.4849 0.8401 0.0004 32 1 3.8752 -0.6805 0.8888 33 1 3.8745 -0.6801 -0.8911 34 1 4.3040 -2.9086 2.1284 35 1 5.0259 -4.5293 3.5490 36 1 6.1675 -8.8482 -0.2867 37 1 6.9288 -11.1377 -0.7577 38 1 6.9887 -13.5328 1.0387 39 1 7.5453 -11.8046 3.4204 40 1 6.7942 -9.5142 3.9036 41 1 5.2868 -6.5629 -1.3177 42 1 4.9119 -6.1312 -3.6944 43 1 4.0699 -3.9466 -4.4456 44 1 3.5937 -2.1688 -2.8224 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000007321512.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:45 Heat of formation + Delta-G solvation = 70.585193 kcal Electronic energy + Delta-G solvation = -29354.869785 eV Core-core repulsion = 25328.685510 eV Total energy + Delta-G solvation = -4026.184275 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 376.099 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.24460 -40.87356 -40.08628 -37.97265 -37.67575 -35.42058 -33.93774 -32.37698 -32.10173 -31.39163 -30.38763 -29.50322 -28.40146 -26.22404 -24.75928 -24.00854 -23.60377 -23.07683 -22.21971 -21.16788 -19.95794 -19.38282 -19.24462 -19.01700 -17.60599 -17.43748 -17.03001 -16.45041 -16.42150 -16.32024 -16.19079 -15.79713 -15.50170 -15.23459 -14.90076 -14.88028 -14.64462 -14.45745 -14.39166 -14.16446 -13.74402 -13.54124 -13.45786 -13.17828 -13.07439 -12.95226 -12.76038 -12.60195 -12.48555 -12.30122 -11.91492 -11.79714 -11.63695 -11.41348 -11.00185 -10.92596 -10.66506 -10.53379 -10.05697 -9.99561 -9.19559 -9.03603 -8.43306 -8.19402 -6.54234 -0.78423 0.13569 0.32217 0.34418 0.46854 0.67967 0.81056 1.32239 1.33144 1.39009 1.43169 2.06528 2.23124 2.38924 2.72818 2.87485 2.90719 3.11177 3.27645 3.78702 3.84097 3.87827 3.91644 3.98202 4.19221 4.28037 4.31852 4.32735 4.41336 4.43637 4.52059 4.56876 4.71287 4.75429 4.81435 4.88344 4.95537 5.02663 5.08506 5.21596 5.22550 5.28848 5.37665 5.45054 5.63614 5.74649 5.76155 5.86752 5.97324 6.02045 6.40894 6.44426 6.54059 6.77967 6.86484 7.10808 8.73460 Molecular weight = 376.10amu Principal moments of inertia in cm(-1) A = 0.014438 B = 0.002153 C = 0.001931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.923837 B =13000.748091 C =14499.820651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.020 3.980 3 Si 0.950 3.050 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.237 1.237 7 C -0.551 4.551 8 H 0.025 0.975 9 C 0.217 3.783 10 N -0.460 5.460 11 C 0.088 3.912 12 C -0.154 4.154 13 C 0.150 3.850 14 C -0.266 4.266 15 S 0.133 5.867 16 C 0.104 3.896 17 C -0.053 4.053 18 C -0.065 4.065 19 C -0.150 4.150 20 C 0.124 3.876 21 O -0.507 6.507 22 C -0.143 4.143 23 C -0.078 4.078 24 N -0.476 5.476 25 C -0.106 4.106 26 C -0.075 4.075 27 C -0.150 4.150 28 C -0.104 4.104 29 C -0.141 4.141 30 C 0.072 3.928 31 H 0.273 0.727 32 H 0.065 0.935 33 H 0.046 0.954 34 H 0.190 0.810 35 H 0.195 0.805 36 H 0.130 0.870 37 H 0.149 0.851 38 H 0.415 0.585 39 H 0.159 0.841 40 H 0.145 0.855 41 H 0.131 0.869 42 H 0.151 0.849 43 H 0.150 0.850 44 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.651 -21.126 5.173 27.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.179 4.179 3 Si 0.771 3.229 4 H -0.188 1.188 5 H -0.203 1.203 6 H -0.161 1.161 7 C -0.589 4.589 8 H 0.043 0.957 9 C 0.097 3.903 10 N -0.138 5.138 11 C -0.044 4.044 12 C -0.164 4.164 13 C 0.019 3.981 14 C -0.405 4.405 15 S 0.390 5.610 16 C -0.172 4.172 17 C -0.057 4.057 18 C -0.087 4.087 19 C -0.168 4.168 20 C 0.078 3.922 21 O -0.321 6.321 22 C -0.161 4.161 23 C -0.099 4.099 24 N -0.190 5.190 25 C -0.111 4.111 26 C -0.094 4.094 27 C -0.169 4.169 28 C -0.123 4.123 29 C -0.161 4.161 30 C -0.034 4.034 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.064 0.936 34 H 0.207 0.793 35 H 0.212 0.788 36 H 0.148 0.852 37 H 0.166 0.834 38 H 0.275 0.725 39 H 0.177 0.823 40 H 0.162 0.838 41 H 0.149 0.851 42 H 0.169 0.831 43 H 0.168 0.832 44 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 17.102 -20.818 5.686 27.536 hybrid contribution -1.416 1.704 -0.569 2.287 sum 15.686 -19.114 5.117 25.250 Atomic orbital electron populations 1.70043 1.08434 1.28824 1.50200 1.25849 0.95650 1.03306 0.93137 0.85690 0.79706 0.77752 0.79729 1.18805 1.20253 1.16051 1.21309 0.90550 0.93509 1.53532 0.95661 1.19857 0.93661 0.77239 0.99544 1.44296 1.51954 1.13016 1.04514 1.22142 0.98695 0.91151 0.92409 1.18071 1.14417 0.93167 0.90710 1.17795 0.99866 0.90173 0.90234 1.27063 1.12338 1.04417 0.96692 1.84286 1.61565 1.04876 1.10299 1.26028 1.02081 0.97680 0.91362 1.18000 1.03990 0.88583 0.95164 1.21213 0.96251 0.95552 0.95649 1.21562 1.00559 0.93911 1.00804 1.18727 0.95216 0.86300 0.91960 1.84750 1.38782 1.15379 1.93166 1.21522 1.01247 0.96365 0.96948 1.21198 0.96934 0.93198 0.98523 1.66352 1.14584 1.01690 1.36398 1.19207 1.05048 0.93868 0.92950 1.20475 0.98741 0.97930 0.92251 1.20951 1.02587 0.97835 0.95490 1.21095 0.98994 0.92612 0.99621 1.20341 1.04833 1.01138 0.89826 1.18676 1.03438 0.91756 0.89523 0.91819 0.91705 0.93567 0.79277 0.78815 0.85214 0.83361 0.72482 0.82338 0.83777 0.85117 0.83101 0.83222 0.86948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.60 13.96 21.45 0.30 -56.30 16 2 C 0.02 1.13 5.47 84.65 0.46 1.59 16 3 Si 0.95 40.43 27.47 68.60 1.88 42.32 16 4 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 5 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 6 H -0.24 -9.00 6.54 99.48 0.65 -8.35 16 7 C -0.55 -30.86 9.94 25.60 0.25 -30.61 16 8 H 0.03 1.65 8.06 -2.91 -0.02 1.63 16 9 C 0.22 9.90 4.81 85.64 0.41 10.31 16 10 N -0.46 -20.09 2.76 -519.01 -1.43 -21.52 16 11 C 0.09 3.35 10.82 83.27 0.90 4.25 16 12 C -0.15 -5.86 6.27 -18.89 -0.12 -5.98 16 13 C 0.15 4.94 6.66 41.02 0.27 5.22 16 14 C -0.27 -7.05 10.80 67.04 0.72 -6.32 16 15 S 0.13 2.79 22.36 -56.49 -1.26 1.53 16 16 C 0.10 2.66 7.33 87.48 0.64 3.30 16 17 C -0.05 -1.13 5.87 -20.09 -0.12 -1.25 16 18 C -0.07 -1.32 9.67 22.50 0.22 -1.10 16 19 C -0.15 -2.38 9.97 22.33 0.22 -2.16 16 20 C 0.12 1.73 6.71 22.58 0.15 1.88 16 21 O -0.51 -5.54 13.49 -91.96 -1.24 -6.78 16 22 C -0.14 -1.82 9.97 22.33 0.22 -1.60 16 23 C -0.08 -1.21 9.59 22.51 0.22 -1.00 16 24 N -0.48 -15.01 9.19 -178.99 -1.64 -16.66 16 25 C -0.11 -4.28 6.29 -20.09 -0.13 -4.40 16 26 C -0.08 -2.63 9.86 22.20 0.22 -2.41 16 27 C -0.15 -4.52 9.98 22.04 0.22 -4.30 16 28 C -0.10 -3.33 10.01 22.29 0.22 -3.11 16 29 C -0.14 -5.58 9.99 22.38 0.22 -5.35 16 30 C 0.07 3.13 6.80 39.00 0.27 3.40 16 31 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 32 H 0.07 2.69 7.17 -2.39 -0.02 2.67 16 33 H 0.05 2.03 7.57 -2.39 -0.02 2.01 16 34 H 0.19 5.85 7.63 -2.92 -0.02 5.83 16 35 H 0.19 4.24 7.60 -2.91 -0.02 4.22 16 36 H 0.13 2.87 7.81 -2.91 -0.02 2.85 16 37 H 0.15 1.85 8.06 -2.91 -0.02 1.83 16 38 H 0.41 0.45 9.06 -74.06 -0.67 -0.22 16 39 H 0.16 1.23 8.06 -2.92 -0.02 1.20 16 40 H 0.14 1.72 7.28 -2.91 -0.02 1.70 16 41 H 0.13 4.23 7.38 -2.91 -0.02 4.21 16 42 H 0.15 3.37 8.06 -2.91 -0.02 3.35 16 43 H 0.15 3.72 8.06 -2.91 -0.02 3.69 16 44 H 0.11 4.48 8.06 -2.91 -0.02 4.46 16 Total: -1.00 -75.02 394.96 2.43 -72.60 By element: Atomic # 1 Polarization: 24.13 SS G_CDS: 0.34 Total: 24.47 kcal Atomic # 6 Polarization: -45.13 SS G_CDS: 5.49 Total: -39.64 kcal Atomic # 7 Polarization: -91.71 SS G_CDS: -2.78 Total: -94.48 kcal Atomic # 8 Polarization: -5.54 SS G_CDS: -1.24 Total: -6.78 kcal Atomic # 14 Polarization: 40.43 SS G_CDS: 1.88 Total: 42.32 kcal Atomic # 16 Polarization: 2.79 SS G_CDS: -1.26 Total: 1.53 kcal Total: -75.02 2.43 -72.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007321512.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.182 kcal (2) G-P(sol) polarization free energy of solvation -75.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds