Wall clock time and date at job start Tue Mar 31 2020 06:33:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53011 * 109.46901 * 2 1 4 4 O 1.42892 * 109.46611 * 180.02562 * 3 2 1 5 5 C 1.36045 * 116.99724 * 180.02562 * 4 3 2 6 6 C 1.38573 * 120.00707 * 0.23187 * 5 4 3 7 7 C 1.38168 * 120.07095 * 180.25043 * 6 5 4 8 8 C 1.38843 * 120.07390 * 359.75039 * 7 6 5 9 9 N 1.40221 * 119.99521 * 179.97438 * 8 7 6 10 10 C 1.35055 * 125.57732 * 180.02562 * 9 8 7 11 11 O 1.21361 * 127.24523 * 0.02562 * 10 9 8 12 12 C 1.49512 * 105.50598 * 180.02562 * 10 9 8 13 13 O 1.21405 * 127.24207 * 179.97438 * 12 10 9 14 14 N 1.35056 * 105.50935 * 0.02562 * 12 10 9 15 15 C 1.36987 * 125.57380 * 179.97438 * 14 12 10 16 16 H 1.08003 * 119.99538 * 148.42588 * 15 14 12 17 17 C 1.39247 * 120.00357 * 328.43283 * 15 14 12 18 18 N 1.31173 * 119.99876 * 340.62865 * 17 15 14 19 19 Si 1.86793 * 120.00139 * 160.63407 * 17 15 14 20 20 H 1.48499 * 109.47576 * 89.99839 * 19 17 15 21 21 H 1.48506 * 109.47118 * 209.99669 * 19 17 15 22 22 H 1.48500 * 109.47285 * 329.99328 * 19 17 15 23 23 C 1.34282 * 108.84502 * 359.73593 * 14 12 10 24 24 O 1.21433 * 124.35614 * 180.29973 * 23 14 12 25 25 C 1.38821 * 120.01293 * 0.02562 * 8 7 6 26 26 C 1.38486 * 119.92885 * 359.97438 * 25 8 7 27 27 O 1.35991 * 120.03335 * 179.97438 * 26 25 8 28 28 C 1.42894 * 117.00472 * 359.97438 * 27 26 25 29 29 C 1.53002 * 109.47548 * 180.02562 * 28 27 26 30 30 C 1.52995 * 109.47339 * 180.02562 * 29 28 27 31 31 H 1.08999 * 109.46719 * 299.99936 * 1 2 3 32 32 H 1.08998 * 109.47375 * 59.99637 * 1 2 3 33 33 H 1.08996 * 109.47038 * 179.97438 * 1 2 3 34 34 H 1.09004 * 109.46986 * 240.00457 * 2 1 3 35 35 H 1.08998 * 109.47375 * 120.00363 * 2 1 3 36 36 H 1.08996 * 109.46696 * 60.00225 * 3 2 1 37 37 H 1.09002 * 109.46951 * 300.00139 * 3 2 1 38 38 H 1.08006 * 119.96629 * 0.02562 * 6 5 4 39 39 H 1.08001 * 119.96069 * 179.76725 * 7 6 5 40 40 H 0.96993 * 120.00379 * 180.02562 * 18 17 15 41 41 H 1.07997 * 120.03187 * 179.97438 * 25 8 7 42 42 H 1.09000 * 109.47151 * 60.00188 * 28 27 26 43 43 H 1.08999 * 109.47413 * 300.00382 * 28 27 26 44 44 H 1.09004 * 109.46793 * 299.99641 * 29 28 27 45 45 H 1.09000 * 109.47119 * 59.99704 * 29 28 27 46 46 H 1.08996 * 109.47042 * 179.97438 * 30 29 28 47 47 H 1.09002 * 109.46921 * 299.99992 * 30 29 28 48 48 H 1.09000 * 109.47416 * 59.99691 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 3.4689 1.4425 -0.0006 5 6 4.0866 2.6547 -0.0001 6 6 3.3320 3.8170 0.0057 7 6 3.9579 5.0488 0.0010 8 6 5.3442 5.1248 -0.0044 9 7 5.9777 6.3757 -0.0098 10 6 7.3126 6.5805 -0.0158 11 8 8.1851 5.7369 -0.0181 12 6 7.4892 8.0652 -0.0191 13 8 8.5358 8.6805 -0.0242 14 7 6.2397 8.5775 -0.0141 15 6 5.9250 9.9108 -0.0144 16 1 5.0232 10.2526 -0.5005 17 6 6.7679 10.8252 0.6119 18 7 7.6332 10.4130 1.5075 19 14 6.6663 12.6390 0.1770 20 1 5.6860 13.3080 1.0696 21 1 8.0016 13.2652 0.3506 22 1 6.2306 12.7858 -1.2350 23 6 5.3562 7.5662 -0.0142 24 8 4.1504 7.7097 -0.0155 25 6 6.1034 3.9625 -0.0056 26 6 5.4764 2.7277 -0.0009 27 8 6.2180 1.5878 -0.0026 28 6 7.6390 1.7382 -0.0099 29 6 8.2981 0.3575 -0.0114 30 6 9.8195 0.5186 -0.0186 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3633 -1.0276 -0.0005 34 1 1.8934 -0.5138 -0.8901 35 1 1.8934 -0.5139 0.8899 36 1 1.6767 1.9563 0.8900 37 1 1.6766 1.9564 -0.8900 38 1 2.2535 3.7599 0.0104 39 1 3.3680 5.9535 0.0018 40 1 8.2201 11.0500 1.9440 41 1 7.1817 4.0213 -0.0103 42 1 7.9506 2.2890 0.8776 43 1 7.9418 2.2859 -0.9023 44 1 7.9954 -0.1906 0.8809 45 1 7.9864 -0.1930 -0.8991 46 1 10.2890 -0.4651 -0.0192 47 1 10.1226 1.0668 -0.9107 48 1 10.1309 1.0688 0.8692 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000007509474.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:50 Heat of formation + Delta-G solvation = -104.190234 kcal Electronic energy + Delta-G solvation = -34822.604959 eV Core-core repulsion = 30038.780062 eV Total energy + Delta-G solvation = -4783.824897 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 376.156 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -42.69664 -40.49032 -38.73857 -38.45439 -38.11326 -36.72554 -35.52020 -34.62758 -33.94906 -33.90576 -32.35128 -30.22820 -29.41736 -27.08777 -26.60589 -25.92908 -24.80053 -23.19618 -22.94142 -21.74330 -21.60243 -20.76850 -20.48722 -18.48641 -18.34869 -17.67955 -16.94824 -16.55354 -16.50572 -16.30000 -16.13401 -15.97855 -15.54120 -15.03472 -14.83735 -14.51446 -14.40145 -14.36359 -14.05743 -13.88853 -13.79745 -13.70218 -13.43641 -13.10866 -12.70684 -12.52384 -12.47640 -12.31225 -12.22271 -11.97868 -11.70732 -11.69471 -11.57009 -11.43501 -11.23956 -11.19832 -11.08185 -10.96689 -10.93955 -10.65865 -10.57725 -10.00126 -9.90268 -9.68404 -9.08623 -8.59873 -8.39521 -7.52375 -6.76880 -4.55125 1.05861 1.29200 1.46069 2.45744 3.01160 3.09816 3.11974 3.14114 3.16272 3.23347 3.40680 3.82449 3.90929 4.06028 4.60377 4.63475 4.72635 4.76345 4.77380 4.90938 4.91966 4.96572 5.00605 5.06124 5.11637 5.16421 5.27059 5.31001 5.33136 5.38129 5.42703 5.45605 5.53511 5.65677 5.72411 5.79098 5.79343 5.89548 5.92412 5.95501 6.05925 6.19308 6.38338 6.66079 6.74724 7.08017 7.10531 7.32175 7.47849 7.55308 7.64432 8.27139 8.31927 8.71892 9.17275 10.31575 Molecular weight = 376.16amu Principal moments of inertia in cm(-1) A = 0.009901 B = 0.002655 C = 0.002117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2827.419234 B =10544.623800 C =13223.628599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C 0.056 3.944 4 O -0.305 6.305 5 C 0.084 3.916 6 C -0.151 4.151 7 C -0.133 4.133 8 C 0.157 3.843 9 N -0.529 5.529 10 C 0.506 3.494 11 O -0.443 6.443 12 C 0.461 3.539 13 O -0.403 6.403 14 N -0.386 5.386 15 C -0.350 4.350 16 H 0.117 0.883 17 C 0.055 3.945 18 N -0.814 5.814 19 Si 0.941 3.059 20 H -0.272 1.272 21 H -0.277 1.277 22 H -0.262 1.262 23 C 0.679 3.321 24 O -0.506 6.506 25 C -0.200 4.200 26 C 0.122 3.878 27 O -0.302 6.302 28 C 0.054 3.946 29 C -0.119 4.119 30 C -0.151 4.151 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.140 0.860 39 H 0.165 0.835 40 H 0.282 0.718 41 H 0.162 0.838 42 H 0.064 0.936 43 H 0.064 0.936 44 H 0.072 0.928 45 H 0.072 0.928 46 H 0.062 0.938 47 H 0.059 0.941 48 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.632 -17.596 -2.405 18.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.019 4.019 4 O -0.220 6.220 5 C 0.038 3.962 6 C -0.170 4.170 7 C -0.153 4.153 8 C 0.065 3.935 9 N -0.270 5.270 10 C 0.290 3.710 11 O -0.311 6.311 12 C 0.244 3.756 13 O -0.270 6.270 14 N -0.119 5.119 15 C -0.475 4.475 16 H 0.134 0.866 17 C -0.159 4.159 18 N -0.445 5.445 19 Si 0.765 3.235 20 H -0.197 1.197 21 H -0.202 1.202 22 H -0.186 1.186 23 C 0.386 3.614 24 O -0.380 6.380 25 C -0.220 4.220 26 C 0.076 3.924 27 O -0.216 6.216 28 C -0.021 4.021 29 C -0.157 4.157 30 C -0.208 4.208 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.158 0.842 39 H 0.183 0.817 40 H 0.093 0.907 41 H 0.179 0.821 42 H 0.082 0.918 43 H 0.082 0.918 44 H 0.091 0.909 45 H 0.090 0.910 46 H 0.081 0.919 47 H 0.078 0.922 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.998 -17.889 -2.267 19.003 hybrid contribution -0.004 1.108 0.075 1.111 sum -6.002 -16.781 -2.192 17.956 Atomic orbital electron populations 1.21694 0.94387 1.02369 1.02264 1.21460 0.95830 0.95018 1.03665 1.22865 0.79039 0.98637 1.01407 1.86130 1.20545 1.25953 1.89337 1.18189 0.88880 0.85141 1.03970 1.20919 0.99920 0.90573 1.05634 1.21416 0.92362 0.99690 1.01823 1.17412 0.91806 0.82143 1.02177 1.44321 1.08917 1.06468 1.67343 1.22057 0.81342 0.93013 0.74577 1.90607 1.46126 1.51694 1.42648 1.19965 0.85574 0.86059 0.84033 1.90687 1.29149 1.65344 1.41843 1.42048 1.04751 1.06704 1.58393 1.19555 1.12889 0.76492 1.38545 0.86578 1.25550 0.95425 1.01738 0.93182 1.69810 1.18430 1.37612 1.18672 0.85729 0.78162 0.79940 0.79710 1.19697 1.20167 1.18642 1.16620 0.86445 0.79625 0.78664 1.90705 1.11248 1.83680 1.52344 1.21262 1.02206 0.89456 1.09114 1.17787 0.87886 0.85415 1.01326 1.86117 1.18657 1.27894 1.88957 1.22931 0.78282 0.98899 1.02036 1.21446 0.95238 0.95540 1.03479 1.21697 0.94287 1.02231 1.02588 0.92338 0.92352 0.91877 0.90898 0.90889 0.92074 0.92092 0.84211 0.81746 0.90731 0.82075 0.91771 0.91807 0.90950 0.90954 0.91898 0.92226 0.92206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.91 37.16 0.37 -0.53 16 2 C -0.12 -0.96 6.30 -26.72 -0.17 -1.13 16 3 C 0.06 0.54 4.74 37.16 0.18 0.72 16 4 O -0.31 -4.17 9.92 -34.47 -0.34 -4.51 16 5 C 0.08 1.25 6.70 -39.11 -0.26 0.99 16 6 C -0.15 -2.12 9.03 -39.48 -0.36 -2.48 16 7 C -0.13 -2.21 9.33 -39.38 -0.37 -2.58 16 8 C 0.16 2.88 6.61 -83.58 -0.55 2.33 16 9 N -0.53 -10.91 2.88 -64.95 -0.19 -11.10 16 10 C 0.51 10.97 8.15 -11.43 -0.09 10.88 16 11 O -0.44 -9.41 15.25 5.49 0.08 -9.33 16 12 C 0.46 11.39 7.56 -11.43 -0.09 11.30 16 13 O -0.40 -10.89 15.48 5.45 0.08 -10.80 16 14 N -0.39 -9.56 2.73 -66.21 -0.18 -9.75 16 15 C -0.35 -8.92 9.65 -14.87 -0.14 -9.06 16 16 H 0.12 2.83 7.91 -52.48 -0.42 2.41 16 17 C 0.06 1.38 4.91 -17.46 -0.09 1.30 16 18 N -0.81 -21.74 11.13 55.51 0.62 -21.12 16 19 Si 0.94 19.23 29.60 -169.99 -5.03 14.20 16 20 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 21 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 22 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 23 C 0.68 15.40 8.18 -87.79 -0.72 14.68 16 24 O -0.51 -11.60 14.58 5.42 0.08 -11.52 16 25 C -0.20 -3.41 8.37 -39.27 -0.33 -3.74 16 26 C 0.12 1.95 6.70 -39.14 -0.26 1.69 16 27 O -0.30 -4.54 9.92 -34.30 -0.34 -4.88 16 28 C 0.05 0.67 4.74 37.16 0.18 0.85 16 29 C -0.12 -1.17 6.30 -26.73 -0.17 -1.34 16 30 C -0.15 -1.27 9.91 37.16 0.37 -0.90 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.54 7.65 -51.93 -0.40 0.14 16 37 H 0.06 0.54 7.67 -51.93 -0.40 0.14 16 38 H 0.14 1.53 6.29 -52.48 -0.33 1.20 16 39 H 0.17 2.89 5.30 -52.49 -0.28 2.61 16 40 H 0.28 7.05 8.30 -40.82 -0.34 6.71 16 41 H 0.16 2.80 3.70 -52.49 -0.19 2.60 16 42 H 0.06 0.81 7.66 -51.93 -0.40 0.42 16 43 H 0.06 0.80 7.66 -51.93 -0.40 0.40 16 44 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 48 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 403.46 15.07 6.08 6.08 Total: -1.00 -29.60 403.46 -7.81 -37.41 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -6.17 Total: 2.33 kcal Atomic # 6 Polarization: 25.49 SS G_CDS: -2.50 Total: 22.98 kcal Atomic # 7 Polarization: -42.22 SS G_CDS: 0.25 Total: -41.97 kcal Atomic # 8 Polarization: -40.61 SS G_CDS: -0.44 Total: -41.04 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -5.03 Total: 14.20 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -29.60 -7.81 -37.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007509474.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.775 kcal (2) G-P(sol) polarization free energy of solvation -29.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds