Wall clock time and date at job start Tue Mar 31 2020 05:56:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.29971 * 119.08516 * 2 1 4 4 C 1.35111 * 121.72463 * 179.97438 * 3 2 1 5 5 S 1.75850 * 130.58887 * 180.02562 * 4 3 2 6 6 C 1.75301 * 92.36462 * 179.89327 * 5 4 3 7 7 C 1.33478 * 111.16002 * 0.29742 * 6 5 4 8 8 C 1.47786 * 122.82699 * 179.97438 * 7 6 5 9 9 C 1.34823 * 125.27134 * 309.70383 * 8 7 6 10 10 C 1.38096 * 114.66784 * 179.75955 * 9 8 7 11 11 C 1.33516 * 115.06347 * 0.24561 * 10 9 8 12 12 S 1.75854 * 109.78869 * 0.02562 * 11 10 9 13 13 C 1.38999 * 119.48936 * 0.07674 * 4 3 2 14 14 C 1.42747 * 117.88356 * 359.94750 * 13 4 3 15 15 O 1.21909 * 120.62148 * 180.02562 * 14 13 4 16 16 N 1.34733 * 118.75733 * 0.02562 * 14 13 4 17 17 C 1.46501 * 119.83819 * 179.97438 * 16 14 13 18 18 C 1.50705 * 109.47217 * 89.82849 * 17 16 14 19 19 O 1.21221 * 119.99834 * 359.97438 * 18 17 16 20 20 O 1.34307 * 120.00217 * 180.02562 * 18 17 16 21 21 C 1.34919 * 117.00178 * 179.97438 * 20 18 17 22 22 H 1.07997 * 119.99705 * 359.97438 * 21 20 18 23 23 C 1.38757 * 120.00078 * 180.02562 * 21 20 18 24 24 N 1.31436 * 119.99683 * 179.97438 * 23 21 20 25 25 Si 1.86794 * 119.99807 * 359.97438 * 23 21 20 26 26 H 1.48495 * 109.47222 * 90.00287 * 25 23 21 27 27 H 1.48501 * 109.47188 * 210.00341 * 25 23 21 28 28 H 1.48496 * 109.47375 * 330.00150 * 25 23 21 29 29 H 1.09001 * 109.46904 * 235.85875 * 1 2 3 30 30 H 1.08993 * 109.47291 * 355.85462 * 1 2 3 31 31 H 1.09004 * 109.47327 * 115.86004 * 1 2 3 32 32 H 1.08002 * 124.41756 * 180.18084 * 6 5 4 33 33 H 1.07996 * 122.66205 * 0.02562 * 9 8 7 34 34 H 1.07998 * 122.46334 * 180.27339 * 10 9 8 35 35 H 1.08002 * 125.10186 * 179.97438 * 11 10 9 36 36 H 1.08999 * 109.46788 * 209.82134 * 17 16 14 37 37 H 1.08998 * 109.47085 * 329.83091 * 17 16 14 38 38 H 0.97003 * 119.99601 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1388 1.1358 0.0000 4 6 3.4884 1.1980 0.0005 5 16 4.5698 2.5847 0.0012 6 6 5.9955 1.5646 0.0048 7 6 5.6630 0.2719 -0.0011 8 6 6.6662 -0.8133 -0.0004 9 6 7.7147 -0.9049 -0.8429 10 6 8.5190 -2.0097 -0.6443 11 6 8.1339 -2.8190 0.3454 12 16 6.6747 -2.1879 1.0970 13 6 4.2277 0.0209 -0.0006 14 6 3.5142 -1.2155 -0.0010 15 8 4.1125 -2.2776 -0.0015 16 7 2.1672 -1.1865 -0.0009 17 6 1.4111 -2.4414 -0.0020 18 6 1.1556 -2.8751 1.4185 19 8 1.5649 -2.2028 2.3404 20 8 0.4753 -4.0070 1.6630 21 6 0.2816 -4.3381 2.9566 22 1 0.6679 -3.7030 3.7401 23 6 -0.4128 -5.4949 3.2802 24 7 -0.6009 -5.8176 4.5404 25 14 -1.0802 -6.5936 1.9250 26 1 -0.0574 -7.6065 1.5601 27 1 -2.3075 -7.2794 2.4030 28 1 -1.4063 -5.7684 0.7342 29 1 -0.3633 -0.5768 0.8506 30 1 -0.3633 1.0249 0.0743 31 1 -0.3634 -0.4483 -0.9248 32 1 7.0104 1.9340 0.0091 33 1 7.9125 -0.1701 -1.6093 34 1 9.3951 -2.2045 -1.2449 35 1 8.6418 -3.7257 0.6395 36 1 0.4600 -2.2920 -0.5129 37 1 1.9846 -3.2107 -0.5191 38 1 -1.0867 -6.6262 4.7666 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000007781495.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:32 Heat of formation + Delta-G solvation = -3.196973 kcal Electronic energy + Delta-G solvation = -29020.648473 eV Core-core repulsion = 24855.042526 eV Total energy + Delta-G solvation = -4165.605947 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 376.038 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.90574 -39.33282 -38.19845 -37.71594 -36.72688 -35.50117 -34.08585 -32.43676 -31.66927 -29.32233 -29.03147 -27.72031 -25.63586 -24.85182 -23.62717 -23.07954 -21.26260 -20.22932 -19.30763 -18.95661 -18.16955 -17.60003 -17.46107 -17.23429 -16.30929 -15.90706 -15.88454 -15.42715 -15.17366 -14.83856 -14.46342 -13.94870 -13.84419 -13.72773 -13.58689 -13.33019 -13.07875 -12.90477 -12.73347 -12.61184 -12.54280 -12.32970 -12.26581 -12.19280 -11.66353 -11.36866 -11.28026 -10.67029 -10.60447 -10.51409 -10.30162 -10.23531 -10.04890 -9.82852 -9.36386 -8.97715 -8.79543 -8.51191 -8.17940 -7.95233 -6.47874 -4.24940 0.13358 0.77895 0.94730 1.45330 1.69835 1.83336 2.06051 2.22132 2.32296 2.81114 2.94796 3.16038 3.22838 3.27919 3.42529 3.77194 3.95635 4.14724 4.24790 4.47992 4.58534 4.81690 4.95329 5.04824 5.08122 5.09694 5.21694 5.28482 5.38113 5.49547 5.53373 5.61476 5.67735 5.87447 5.96306 6.08131 6.22025 6.32711 6.43483 6.50680 7.54612 7.55675 7.79739 7.91785 8.43307 8.88096 9.47540 10.59965 Molecular weight = 376.04amu Principal moments of inertia in cm(-1) A = 0.010166 B = 0.003322 C = 0.002685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2753.574868 B = 8425.608603 C =10426.979919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.429 3.571 3 N -0.512 5.512 4 C 0.094 3.906 5 S 0.202 5.798 6 C -0.222 4.222 7 C 0.038 3.962 8 C -0.138 4.138 9 C -0.129 4.129 10 C -0.143 4.143 11 C -0.233 4.233 12 S 0.199 5.801 13 C -0.235 4.235 14 C 0.561 3.439 15 O -0.499 6.499 16 N -0.509 5.509 17 C 0.105 3.895 18 C 0.392 3.608 19 O -0.527 6.527 20 O -0.242 6.242 21 C -0.383 4.383 22 H 0.110 0.890 23 C 0.069 3.931 24 N -0.868 5.868 25 Si 0.905 3.095 26 H -0.272 1.272 27 H -0.280 1.280 28 H -0.259 1.259 29 H 0.102 0.898 30 H 0.107 0.893 31 H 0.100 0.900 32 H 0.179 0.821 33 H 0.136 0.864 34 H 0.136 0.864 35 H 0.161 0.839 36 H 0.129 0.871 37 H 0.133 0.867 38 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.991 13.797 -14.346 22.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.161 3.839 3 N -0.236 5.236 4 C -0.139 4.139 5 S 0.467 5.533 6 C -0.360 4.360 7 C 0.024 3.976 8 C -0.258 4.258 9 C -0.162 4.162 10 C -0.174 4.174 11 C -0.370 4.370 12 S 0.468 5.532 13 C -0.253 4.253 14 C 0.355 3.645 15 O -0.373 6.373 16 N -0.229 5.229 17 C -0.019 4.019 18 C 0.236 3.764 19 O -0.422 6.422 20 O -0.149 6.149 21 C -0.458 4.458 22 H 0.128 0.872 23 C -0.136 4.136 24 N -0.507 5.507 25 Si 0.730 3.270 26 H -0.197 1.197 27 H -0.206 1.206 28 H -0.183 1.183 29 H 0.121 0.879 30 H 0.126 0.874 31 H 0.118 0.882 32 H 0.196 0.804 33 H 0.154 0.846 34 H 0.154 0.846 35 H 0.179 0.821 36 H 0.146 0.854 37 H 0.151 0.849 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 9.055 14.943 -12.711 21.607 hybrid contribution 1.291 -2.400 -1.431 3.078 sum 10.346 12.543 -14.142 21.549 Atomic orbital electron populations 1.21145 0.84494 1.06945 1.04969 1.23183 0.96373 0.79623 0.84721 1.67898 1.06084 1.23590 1.26053 1.23840 0.94001 0.97142 0.98942 1.83912 0.92188 1.03691 1.73556 1.25266 1.02980 0.95222 1.12523 1.17077 0.88769 0.91354 1.00357 1.22469 0.99611 0.99893 1.03835 1.20207 0.95070 0.99986 1.00889 1.19910 1.01958 0.95471 1.00040 1.25914 1.01914 1.05488 1.03705 1.84921 1.20074 1.15896 1.32268 1.20508 0.93868 0.92941 1.17952 1.16539 0.80521 0.89725 0.77714 1.90981 1.65942 1.31535 1.48880 1.46107 1.08128 1.07870 1.60828 1.21215 0.99092 0.86152 0.95442 1.22721 0.80910 0.82216 0.90571 1.90670 1.50762 1.54972 1.45788 1.83469 1.62375 1.36974 1.32114 1.20640 1.36812 1.09556 0.78811 0.87216 1.24548 0.95771 0.96360 0.96907 1.69600 1.39154 1.25466 1.16441 0.86221 0.78662 0.80391 0.81699 1.19703 1.20597 1.18291 0.87917 0.87389 0.88156 0.80404 0.84595 0.84642 0.82101 0.85361 0.84873 0.90814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.15 8.74 36.00 0.31 -0.84 16 2 C 0.43 6.08 7.59 -155.17 -1.18 4.90 16 3 N -0.51 -7.54 10.28 -8.81 -0.09 -7.63 16 4 C 0.09 1.40 7.68 -15.83 -0.12 1.28 16 5 S 0.20 2.22 23.22 -107.50 -2.50 -0.27 16 6 C -0.22 -2.51 10.79 29.07 0.31 -2.20 16 7 C 0.04 0.55 5.81 -104.68 -0.61 -0.05 16 8 C -0.14 -2.04 5.54 -36.89 -0.20 -2.25 16 9 C -0.13 -1.61 10.03 -40.84 -0.41 -2.02 16 10 C -0.14 -1.67 10.16 -41.29 -0.42 -2.09 16 11 C -0.23 -2.98 11.22 29.08 0.33 -2.65 16 12 S 0.20 3.18 20.88 -107.50 -2.24 0.94 16 13 C -0.24 -3.92 6.07 -104.89 -0.64 -4.56 16 14 C 0.56 10.35 7.49 -14.54 -0.11 10.24 16 15 O -0.50 -10.18 13.51 5.00 0.07 -10.11 16 16 N -0.51 -8.33 2.08 -117.12 -0.24 -8.57 16 17 C 0.10 1.65 5.44 -5.19 -0.03 1.62 16 18 C 0.39 8.69 7.65 36.01 0.28 8.97 16 19 O -0.53 -13.65 15.67 -19.06 -0.30 -13.94 16 20 O -0.24 -6.02 8.58 -20.69 -0.18 -6.19 16 21 C -0.38 -11.01 10.10 30.92 0.31 -10.70 16 22 H 0.11 3.53 7.09 -52.49 -0.37 3.16 16 23 C 0.07 1.91 5.49 -17.53 -0.10 1.82 16 24 N -0.87 -25.08 13.96 55.48 0.77 -24.31 16 25 Si 0.91 20.47 28.62 -169.99 -4.86 15.61 16 26 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 27 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 28 H -0.26 -5.55 7.11 56.52 0.40 -5.15 16 29 H 0.10 1.17 7.65 -51.93 -0.40 0.77 16 30 H 0.11 0.88 8.09 -51.93 -0.42 0.46 16 31 H 0.10 0.65 7.56 -51.93 -0.39 0.26 16 32 H 0.18 1.46 8.06 -52.49 -0.42 1.04 16 33 H 0.14 1.36 8.06 -52.49 -0.42 0.94 16 34 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 35 H 0.16 1.67 8.06 -52.49 -0.42 1.24 16 36 H 0.13 1.38 6.47 -51.93 -0.34 1.05 16 37 H 0.13 2.00 7.44 -51.93 -0.39 1.62 16 38 H 0.28 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 362.75 15.07 5.47 5.47 Total: -1.00 -36.22 362.75 -9.51 -45.72 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: -3.13 Total: 1.83 kcal Atomic # 6 Polarization: 3.74 SS G_CDS: -2.27 Total: 1.47 kcal Atomic # 7 Polarization: -40.95 SS G_CDS: 0.44 Total: -40.51 kcal Atomic # 8 Polarization: -29.84 SS G_CDS: -0.41 Total: -30.25 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -4.86 Total: 15.61 kcal Atomic # 16 Polarization: 5.41 SS G_CDS: -4.74 Total: 0.67 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -36.22 -9.51 -45.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007781495.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.524 kcal (2) G-P(sol) polarization free energy of solvation -36.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds