Wall clock time and date at job start Tue Mar 31 2020 05:56:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.29971 * 119.08516 * 2 1 4 4 C 1.35111 * 121.72463 * 179.97438 * 3 2 1 5 5 S 1.75850 * 130.58887 * 180.02562 * 4 3 2 6 6 C 1.75301 * 92.36462 * 179.89327 * 5 4 3 7 7 C 1.33478 * 111.16002 * 0.29742 * 6 5 4 8 8 C 1.47786 * 122.82699 * 179.97438 * 7 6 5 9 9 C 1.34823 * 125.27134 * 309.70383 * 8 7 6 10 10 C 1.38096 * 114.66784 * 179.75955 * 9 8 7 11 11 C 1.33516 * 115.06347 * 0.24561 * 10 9 8 12 12 S 1.75854 * 109.78869 * 0.02562 * 11 10 9 13 13 C 1.38999 * 119.48936 * 0.07674 * 4 3 2 14 14 C 1.42747 * 117.88356 * 359.94750 * 13 4 3 15 15 O 1.21909 * 120.62148 * 180.02562 * 14 13 4 16 16 N 1.34733 * 118.75733 * 0.02562 * 14 13 4 17 17 C 1.46501 * 119.83819 * 179.97438 * 16 14 13 18 18 C 1.50705 * 109.47217 * 89.82849 * 17 16 14 19 19 O 1.21221 * 119.99834 * 359.97438 * 18 17 16 20 20 O 1.34307 * 120.00217 * 180.02562 * 18 17 16 21 21 C 1.34919 * 117.00178 * 179.97438 * 20 18 17 22 22 H 1.07997 * 119.99705 * 359.97438 * 21 20 18 23 23 C 1.38757 * 120.00078 * 180.02562 * 21 20 18 24 24 N 1.31436 * 119.99683 * 179.97438 * 23 21 20 25 25 Si 1.86794 * 119.99807 * 359.97438 * 23 21 20 26 26 H 1.48495 * 109.47222 * 90.00287 * 25 23 21 27 27 H 1.48501 * 109.47188 * 210.00341 * 25 23 21 28 28 H 1.48496 * 109.47375 * 330.00150 * 25 23 21 29 29 H 1.09001 * 109.46904 * 235.85875 * 1 2 3 30 30 H 1.08993 * 109.47291 * 355.85462 * 1 2 3 31 31 H 1.09004 * 109.47327 * 115.86004 * 1 2 3 32 32 H 1.08002 * 124.41756 * 180.18084 * 6 5 4 33 33 H 1.07996 * 122.66205 * 0.02562 * 9 8 7 34 34 H 1.07998 * 122.46334 * 180.27339 * 10 9 8 35 35 H 1.08002 * 125.10186 * 179.97438 * 11 10 9 36 36 H 1.08999 * 109.46788 * 209.82134 * 17 16 14 37 37 H 1.08998 * 109.47085 * 329.83091 * 17 16 14 38 38 H 0.97003 * 119.99601 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1388 1.1358 0.0000 4 6 3.4884 1.1980 0.0005 5 16 4.5698 2.5847 0.0012 6 6 5.9955 1.5646 0.0048 7 6 5.6630 0.2719 -0.0011 8 6 6.6662 -0.8133 -0.0004 9 6 7.7147 -0.9049 -0.8429 10 6 8.5190 -2.0097 -0.6443 11 6 8.1339 -2.8190 0.3454 12 16 6.6747 -2.1879 1.0970 13 6 4.2277 0.0209 -0.0006 14 6 3.5142 -1.2155 -0.0010 15 8 4.1125 -2.2776 -0.0015 16 7 2.1672 -1.1865 -0.0009 17 6 1.4111 -2.4414 -0.0020 18 6 1.1556 -2.8751 1.4185 19 8 1.5649 -2.2028 2.3404 20 8 0.4753 -4.0070 1.6630 21 6 0.2816 -4.3381 2.9566 22 1 0.6679 -3.7030 3.7401 23 6 -0.4128 -5.4949 3.2802 24 7 -0.6009 -5.8176 4.5404 25 14 -1.0802 -6.5936 1.9250 26 1 -0.0574 -7.6065 1.5601 27 1 -2.3075 -7.2794 2.4030 28 1 -1.4063 -5.7684 0.7342 29 1 -0.3633 -0.5768 0.8506 30 1 -0.3633 1.0249 0.0743 31 1 -0.3634 -0.4483 -0.9248 32 1 7.0104 1.9340 0.0091 33 1 7.9125 -0.1701 -1.6093 34 1 9.3951 -2.2045 -1.2449 35 1 8.6418 -3.7257 0.6395 36 1 0.4600 -2.2920 -0.5129 37 1 1.9846 -3.2107 -0.5191 38 1 -1.0867 -6.6262 4.7666 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000007781495.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:31 Heat of formation + Delta-G solvation = -25.919358 kcal Electronic energy + Delta-G solvation = -29021.633790 eV Core-core repulsion = 24855.042526 eV Total energy + Delta-G solvation = -4166.591264 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 376.038 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.11557 -41.17695 -39.24545 -38.97453 -37.96187 -37.25224 -35.31977 -34.56397 -32.67058 -30.60919 -30.14320 -28.74764 -27.50360 -25.97684 -24.84449 -24.16952 -22.58438 -21.69600 -20.41969 -20.25161 -19.92560 -19.14383 -18.73979 -18.40219 -17.57625 -17.39952 -17.02347 -16.96481 -16.56750 -16.37709 -15.69596 -15.58982 -14.92443 -14.81515 -14.65964 -14.53882 -14.39664 -14.12489 -14.08088 -14.05065 -13.69624 -13.54905 -13.32171 -13.27807 -13.00987 -12.70158 -12.45522 -12.34032 -12.32641 -11.92114 -11.78976 -11.54676 -11.47172 -11.24222 -11.05782 -10.88319 -9.95468 -9.62222 -9.33702 -8.94866 -8.58973 -6.47981 -0.93728 -0.25891 -0.02903 0.39428 0.60435 0.77508 1.01854 1.03902 1.16573 1.28801 1.35305 1.47495 1.56334 1.84630 2.07473 2.25928 2.47181 2.81046 2.87034 3.18853 3.39536 3.53941 3.80345 3.92244 4.02004 4.09040 4.18004 4.20163 4.52654 4.54418 4.59998 4.63256 4.71329 4.78682 4.86798 5.11991 5.17229 5.27529 5.33474 5.38511 5.58739 5.81608 6.38936 6.43067 6.53624 6.74944 7.42046 8.53704 Molecular weight = 376.04amu Principal moments of inertia in cm(-1) A = 0.010166 B = 0.003322 C = 0.002685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2753.574868 B = 8425.608603 C =10426.979919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.417 3.583 3 N -0.515 5.515 4 C 0.065 3.935 5 S 0.276 5.724 6 C -0.201 4.201 7 C 0.004 3.996 8 C -0.143 4.143 9 C -0.120 4.120 10 C -0.136 4.136 11 C -0.225 4.225 12 S 0.085 5.915 13 C -0.265 4.265 14 C 0.543 3.457 15 O -0.533 6.533 16 N -0.516 5.516 17 C 0.116 3.884 18 C 0.398 3.602 19 O -0.570 6.570 20 O -0.243 6.243 21 C -0.409 4.409 22 H 0.052 0.948 23 C 0.018 3.982 24 N -0.915 5.915 25 Si 0.984 3.016 26 H -0.267 1.267 27 H -0.265 1.265 28 H -0.234 1.234 29 H 0.085 0.915 30 H 0.126 0.874 31 H 0.143 0.857 32 H 0.214 0.786 33 H 0.168 0.832 34 H 0.173 0.827 35 H 0.181 0.819 36 H 0.189 0.811 37 H 0.144 0.856 38 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.259 15.226 -18.259 25.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.150 3.850 3 N -0.239 5.239 4 C -0.167 4.167 5 S 0.541 5.459 6 C -0.339 4.339 7 C -0.009 4.009 8 C -0.263 4.263 9 C -0.152 4.152 10 C -0.166 4.166 11 C -0.361 4.361 12 S 0.354 5.646 13 C -0.282 4.282 14 C 0.339 3.661 15 O -0.411 6.411 16 N -0.236 5.236 17 C -0.007 4.007 18 C 0.243 3.757 19 O -0.466 6.466 20 O -0.151 6.151 21 C -0.485 4.485 22 H 0.070 0.930 23 C -0.182 4.182 24 N -0.554 5.554 25 Si 0.802 3.198 26 H -0.191 1.191 27 H -0.189 1.189 28 H -0.157 1.157 29 H 0.104 0.896 30 H 0.145 0.855 31 H 0.161 0.839 32 H 0.231 0.769 33 H 0.185 0.815 34 H 0.191 0.809 35 H 0.198 0.802 36 H 0.206 0.794 37 H 0.161 0.839 38 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 9.325 16.435 -16.624 25.168 hybrid contribution 1.387 -2.578 -0.184 2.933 sum 10.712 13.857 -16.809 24.275 Atomic orbital electron populations 1.21370 0.81376 1.08383 1.06217 1.24081 0.98060 0.78834 0.84036 1.67993 1.06095 1.23746 1.26072 1.24414 0.94460 0.98729 0.99128 1.83668 0.90010 1.00869 1.71337 1.25767 1.04986 0.94206 1.08926 1.17226 0.88049 0.92599 1.03054 1.22528 1.00685 0.99219 1.03858 1.20645 0.93872 1.00446 1.00203 1.20360 1.02485 0.94430 0.99332 1.26094 0.99986 1.06386 1.03656 1.85276 1.24058 1.19574 1.35733 1.20714 0.95236 0.92803 1.19491 1.17059 0.81359 0.90202 0.77493 1.90953 1.66807 1.32649 1.50642 1.46200 1.07745 1.08635 1.61023 1.21465 1.02041 0.86575 0.90625 1.24186 0.78036 0.80397 0.93042 1.90657 1.51757 1.55938 1.48229 1.83472 1.63629 1.38397 1.29602 1.20241 1.38681 1.10138 0.79405 0.92973 1.25627 0.95229 0.97396 0.99989 1.69706 1.40054 1.26574 1.19083 0.85081 0.78265 0.77964 0.78472 1.19150 1.18909 1.15690 0.89598 0.85549 0.83948 0.76920 0.81476 0.80932 0.80158 0.79424 0.83866 0.89923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.01 8.74 71.23 0.62 -1.39 16 2 C 0.42 11.46 7.59 138.04 1.05 12.51 16 3 N -0.52 -14.73 10.28 -181.79 -1.87 -16.60 16 4 C 0.07 1.91 7.68 84.37 0.65 2.56 16 5 S 0.28 5.38 23.22 -56.49 -1.31 4.07 16 6 C -0.20 -4.06 10.79 66.74 0.72 -3.34 16 7 C 0.00 0.10 5.81 -19.90 -0.12 -0.01 16 8 C -0.14 -4.25 5.54 24.01 0.13 -4.11 16 9 C -0.12 -2.73 10.03 21.45 0.22 -2.51 16 10 C -0.14 -2.87 10.16 21.17 0.22 -2.66 16 11 C -0.23 -5.68 11.22 66.75 0.75 -4.93 16 12 S 0.09 2.92 20.88 -56.49 -1.18 1.74 16 13 C -0.26 -8.98 6.07 -20.04 -0.12 -9.10 16 14 C 0.54 20.79 7.49 85.38 0.64 21.43 16 15 O -0.53 -23.03 13.51 -5.02 -0.07 -23.10 16 16 N -0.52 -16.91 2.08 -642.60 -1.33 -18.25 16 17 C 0.12 3.57 5.44 85.63 0.47 4.03 16 18 C 0.40 18.20 7.65 71.24 0.54 18.75 16 19 O -0.57 -31.44 15.67 20.74 0.32 -31.12 16 20 O -0.24 -12.37 8.58 14.91 0.13 -12.25 16 21 C -0.41 -24.82 10.10 67.94 0.69 -24.13 16 22 H 0.05 3.68 7.09 -2.91 -0.02 3.66 16 23 C 0.02 1.03 5.49 84.88 0.47 1.50 16 24 N -0.92 -54.95 13.96 21.62 0.30 -54.65 16 25 Si 0.98 41.81 28.62 68.60 1.96 43.78 16 26 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 27 H -0.26 -10.48 7.11 99.48 0.71 -9.78 16 28 H -0.23 -8.97 7.11 99.48 0.71 -8.26 16 29 H 0.09 1.86 7.65 -2.39 -0.02 1.84 16 30 H 0.13 1.74 8.09 -2.39 -0.02 1.72 16 31 H 0.14 1.24 7.56 -2.38 -0.02 1.22 16 32 H 0.21 2.62 8.06 -2.91 -0.02 2.60 16 33 H 0.17 2.69 8.06 -2.91 -0.02 2.67 16 34 H 0.17 2.37 8.06 -2.91 -0.02 2.34 16 35 H 0.18 3.64 8.06 -2.91 -0.02 3.62 16 36 H 0.19 3.42 6.47 -2.39 -0.02 3.41 16 37 H 0.14 4.22 7.44 -2.39 -0.02 4.20 16 38 H 0.29 15.69 8.31 -92.71 -0.77 14.92 16 Total: -1.00 -89.01 362.75 5.02 -83.99 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: 1.15 Total: 13.79 kcal Atomic # 6 Polarization: 1.68 SS G_CDS: 6.92 Total: 8.59 kcal Atomic # 7 Polarization: -86.60 SS G_CDS: -2.90 Total: -89.50 kcal Atomic # 8 Polarization: -66.85 SS G_CDS: 0.39 Total: -66.46 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 1.96 Total: 43.78 kcal Atomic # 16 Polarization: 8.30 SS G_CDS: -2.49 Total: 5.81 kcal Total: -89.01 5.02 -83.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007781495.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.069 kcal (2) G-P(sol) polarization free energy of solvation -89.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds