Wall clock time and date at job start Tue Mar 31 2020 06:23:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38135 * 120.03470 * 2 1 4 4 C 1.38254 * 120.06933 * 180.25130 * 3 2 1 5 5 C 1.38307 * 120.13378 * 359.73553 * 4 3 2 6 6 C 1.38099 * 120.06402 * 359.97438 * 5 4 3 7 7 C 1.38818 * 120.03228 * 179.71356 * 2 1 3 8 8 N 1.40143 * 120.06917 * 0.03029 * 7 2 1 9 9 C 1.37237 * 127.21014 * 89.87025 * 8 7 2 10 10 S 1.76198 * 126.40167 * 0.04564 * 9 8 7 11 11 C 1.76201 * 99.99864 * 180.31370 * 10 9 8 12 12 H 1.08005 * 119.99732 * 359.97438 * 11 10 9 13 13 C 1.38527 * 120.00080 * 179.97438 * 11 10 9 14 14 N 1.31718 * 119.99902 * 0.02562 * 13 11 10 15 15 Si 1.86806 * 120.00269 * 179.97438 * 13 11 10 16 16 H 1.48492 * 109.46937 * 89.99716 * 15 13 11 17 17 H 1.48491 * 109.47365 * 210.00202 * 15 13 11 18 18 H 1.48506 * 109.46947 * 330.00467 * 15 13 11 19 19 N 1.31482 * 107.18975 * 180.28728 * 9 8 7 20 20 N 1.28491 * 110.14181 * 359.73627 * 19 9 8 21 21 C 1.31670 * 110.03110 * 0.02562 * 20 19 9 22 22 C 1.47468 * 126.47358 * 180.02562 * 21 20 19 23 23 C 1.35986 * 126.70657 * 180.02562 * 22 21 20 24 24 N 1.36321 * 109.70385 * 180.02562 * 23 22 21 25 25 H 0.97003 * 124.86894 * 179.97438 * 24 23 22 26 26 C 1.37859 * 110.25033 * 359.97438 * 24 23 22 27 27 C 1.39152 * 133.18621 * 180.02562 * 26 24 23 28 28 C 1.37733 * 119.93163 * 179.97438 * 27 26 24 29 29 C 1.38791 * 120.64388 * 0.02562 * 28 27 26 30 30 C 1.37715 * 120.32215 * 359.97099 * 29 28 27 31 31 C 1.39371 * 119.67366 * 0.02641 * 30 29 28 32 32 H 1.08995 * 109.47765 * 270.28044 * 1 2 3 33 33 H 1.09002 * 109.46917 * 30.28555 * 1 2 3 34 34 H 1.09001 * 109.47122 * 150.28033 * 1 2 3 35 35 H 1.08003 * 119.96652 * 359.97438 * 3 2 1 36 36 H 1.07999 * 119.93706 * 179.72500 * 4 3 2 37 37 H 1.07994 * 119.96877 * 180.02562 * 5 4 3 38 38 H 1.07999 * 120.02937 * 180.02562 * 6 5 4 39 39 H 0.97004 * 119.99709 * 180.02562 * 14 13 11 40 40 H 1.08001 * 125.14418 * 0.02562 * 23 22 21 41 41 H 1.08005 * 120.02943 * 359.93640 * 27 26 24 42 42 H 1.08001 * 119.67977 * 180.02562 * 28 27 26 43 43 H 1.07996 * 119.84269 * 179.97438 * 29 28 27 44 44 H 1.07997 * 120.16417 * 179.74608 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1959 0.0000 4 6 3.5809 1.1967 -0.0052 5 6 4.2760 0.0010 -0.0050 6 6 3.5904 -1.1978 0.0010 7 6 2.2018 -1.2018 0.0060 8 7 1.5032 -2.4167 0.0114 9 6 1.0879 -3.1401 -1.0783 10 16 1.3341 -2.7158 -2.7706 11 6 0.5374 -4.0819 -3.5476 12 1 0.0863 -4.8573 -2.9462 13 6 0.4896 -4.1613 -4.9298 14 7 1.0402 -3.2158 -5.6632 15 14 -0.3545 -5.6100 -5.7535 16 1 -1.7881 -5.2896 -5.9704 17 1 0.2949 -5.8834 -7.0607 18 1 -0.2412 -6.8086 -4.8842 19 7 0.4673 -4.2063 -0.6234 20 7 0.4693 -4.2048 0.6615 21 6 1.0921 -3.1351 1.1103 22 6 1.3047 -2.7730 2.5240 23 6 1.9465 -1.6696 2.9927 24 7 1.9431 -1.6802 4.3559 25 1 2.3418 -0.9966 4.9168 26 6 1.2918 -2.8020 4.8227 27 6 1.0156 -3.2806 6.0998 28 6 0.3277 -4.4635 6.2565 29 6 -0.0951 -5.1879 5.1507 30 6 0.1682 -4.7314 3.8784 31 6 0.8633 -3.5360 3.7043 32 1 -0.3634 0.0050 1.0276 33 1 -0.3633 0.8874 -0.5183 34 1 -0.3633 -0.8925 -0.5095 35 1 1.6584 2.1312 -0.0004 36 1 4.1193 2.1329 -0.0097 37 1 5.3559 0.0047 -0.0087 38 1 4.1337 -2.1312 0.0017 39 1 1.0064 -3.2713 -6.6310 40 1 2.3916 -0.9012 2.3780 41 1 1.3409 -2.7253 6.9671 42 1 0.1151 -4.8310 7.2496 43 1 -0.6332 -6.1140 5.2886 44 1 -0.1584 -5.2992 3.0197 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000008090928.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:09 Heat of formation + Delta-G solvation = 159.823108 kcal Electronic energy + Delta-G solvation = -30885.355869 eV Core-core repulsion = 26895.333992 eV Total energy + Delta-G solvation = -3990.021877 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 376.105 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.17103 -41.10245 -39.37089 -36.89110 -34.43005 -32.72975 -32.63560 -32.54095 -30.07404 -29.73729 -29.34115 -28.17638 -26.94169 -25.66359 -23.70479 -22.92511 -22.27380 -22.13426 -21.57554 -21.09849 -19.53108 -18.37187 -17.91169 -16.99316 -16.34351 -16.15126 -15.89407 -15.57822 -15.11967 -14.90923 -14.71144 -14.43830 -14.22901 -14.14237 -13.83531 -13.64641 -13.59288 -13.27310 -13.01146 -12.69438 -12.37349 -12.07113 -11.71006 -11.68309 -11.67194 -11.40169 -11.29903 -11.13400 -11.08075 -10.89699 -10.56344 -10.32997 -10.21024 -9.98989 -9.76661 -9.39608 -8.97522 -8.84036 -8.82143 -8.70172 -8.29428 -7.64244 -6.62550 -6.44430 -4.18135 1.01668 1.02667 1.22055 1.55569 1.94743 2.44274 2.93208 2.95402 3.22338 3.24541 3.28299 3.36607 3.51490 3.72929 4.02103 4.04292 4.64277 4.67529 4.73443 4.74247 4.74715 4.91290 4.99323 5.07009 5.07703 5.16500 5.18388 5.27647 5.34649 5.52518 5.57037 5.64195 5.64853 5.67183 5.74963 5.82087 6.06492 6.16506 6.19318 6.24534 6.26382 6.32485 6.44111 6.48721 6.55582 6.61510 6.68739 6.75439 6.82300 7.11527 7.36718 7.56570 7.60031 8.39782 9.07709 9.48183 10.63638 Molecular weight = 376.11amu Principal moments of inertia in cm(-1) A = 0.009109 B = 0.003395 C = 0.002611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3073.290271 B = 8244.286977 C =10720.554474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.059 4.059 3 C -0.116 4.116 4 C -0.105 4.105 5 C -0.119 4.119 6 C -0.095 4.095 7 C 0.124 3.876 8 N -0.440 5.440 9 C 0.178 3.822 10 S 0.144 5.856 11 C -0.533 4.533 12 H 0.105 0.895 13 C 0.076 3.924 14 N -0.879 5.879 15 Si 0.931 3.069 16 H -0.274 1.274 17 H -0.282 1.282 18 H -0.265 1.265 19 N -0.302 5.302 20 N -0.274 5.274 21 C 0.226 3.774 22 C -0.080 4.080 23 C 0.066 3.934 24 N -0.587 5.587 25 H 0.417 0.583 26 C 0.095 3.905 27 C -0.137 4.137 28 C -0.097 4.097 29 C -0.152 4.152 30 C -0.052 4.052 31 C -0.075 4.075 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.130 0.870 36 H 0.128 0.872 37 H 0.130 0.870 38 H 0.130 0.870 39 H 0.273 0.727 40 H 0.170 0.830 41 H 0.118 0.882 42 H 0.123 0.877 43 H 0.123 0.877 44 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.859 10.113 20.017 22.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.060 4.060 3 C -0.135 4.135 4 C -0.123 4.123 5 C -0.138 4.138 6 C -0.114 4.114 7 C 0.033 3.967 8 N -0.135 5.135 9 C -0.190 4.190 10 S 0.377 5.623 11 C -0.681 4.681 12 H 0.123 0.877 13 C -0.133 4.133 14 N -0.514 5.514 15 Si 0.756 3.244 16 H -0.199 1.199 17 H -0.207 1.207 18 H -0.190 1.190 19 N -0.147 5.147 20 N -0.115 5.115 21 C -0.039 4.039 22 C -0.090 4.090 23 C -0.065 4.065 24 N -0.189 5.189 25 H 0.254 0.746 26 C -0.011 4.011 27 C -0.158 4.158 28 C -0.116 4.116 29 C -0.171 4.171 30 C -0.071 4.071 31 C -0.081 4.081 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.148 0.852 36 H 0.146 0.854 37 H 0.148 0.852 38 H 0.147 0.853 39 H 0.083 0.917 40 H 0.187 0.813 41 H 0.136 0.864 42 H 0.141 0.859 43 H 0.141 0.859 44 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 4.688 9.816 19.254 22.115 hybrid contribution -0.055 -0.267 0.061 0.279 sum 4.632 9.550 19.316 22.040 Atomic orbital electron populations 1.20820 0.90375 1.04003 1.02447 1.20089 0.96900 0.91696 0.97358 1.20961 0.94204 0.96997 1.01309 1.21247 0.94145 0.98243 0.98649 1.21021 1.00179 0.91551 1.01007 1.21324 0.92456 0.99443 0.98181 1.17346 0.90492 0.83463 1.05425 1.43639 1.46358 1.17997 1.05517 1.28579 0.99924 0.92282 0.98248 1.83616 1.67514 1.31239 0.79889 1.23216 1.41707 1.09427 0.93790 0.87691 1.25041 0.94860 0.97494 0.95919 1.69992 1.42131 1.32729 1.06584 0.85939 0.79163 0.81108 0.78150 1.19935 1.20716 1.18964 1.74722 1.20962 1.17686 1.01299 1.74269 1.16730 1.16208 1.04245 1.21750 1.03179 0.92173 0.86836 1.17310 1.07836 0.97042 0.86847 1.21890 1.02167 0.99498 0.82934 1.41502 1.50287 1.21300 1.05843 0.74612 1.18215 0.99307 0.88961 0.94655 1.19927 1.04426 0.98356 0.93068 1.20787 0.97925 0.94195 0.98738 1.20939 1.03230 1.00900 0.92032 1.20805 0.94845 0.93680 0.97764 1.18744 1.02631 0.96400 0.90302 0.91015 0.90722 0.90803 0.85167 0.85443 0.85176 0.85251 0.91699 0.81260 0.86412 0.85909 0.85900 0.84597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.70 9.77 36.01 0.35 -1.34 16 2 C -0.06 -0.82 5.53 -104.45 -0.58 -1.39 16 3 C -0.12 -1.24 9.70 -39.61 -0.38 -1.63 16 4 C -0.10 -0.99 10.04 -39.55 -0.40 -1.39 16 5 C -0.12 -1.26 10.04 -39.61 -0.40 -1.65 16 6 C -0.09 -1.31 9.56 -39.40 -0.38 -1.69 16 7 C 0.12 1.97 3.44 -83.61 -0.29 1.69 16 8 N -0.44 -8.62 1.94 -58.11 -0.11 -8.74 16 9 C 0.18 4.23 7.54 -87.51 -0.66 3.57 16 10 S 0.14 3.68 21.58 -107.50 -2.32 1.36 16 11 C -0.53 -15.09 9.36 30.84 0.29 -14.80 16 12 H 0.11 3.07 6.92 -52.48 -0.36 2.71 16 13 C 0.08 2.08 5.49 -17.49 -0.10 1.99 16 14 N -0.88 -24.76 13.22 55.48 0.73 -24.02 16 15 Si 0.93 21.53 29.55 -169.99 -5.02 16.51 16 16 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 17 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 18 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 19 N -0.30 -7.71 11.02 30.85 0.34 -7.37 16 20 N -0.27 -6.33 11.92 32.57 0.39 -5.94 16 21 C 0.23 4.51 7.94 -153.59 -1.22 3.29 16 22 C -0.08 -1.32 6.28 -103.25 -0.65 -1.97 16 23 C 0.07 0.84 11.14 -16.36 -0.18 0.66 16 24 N -0.59 -6.04 6.03 -10.38 -0.06 -6.10 16 25 H 0.42 2.68 8.96 -40.82 -0.37 2.31 16 26 C 0.09 1.18 7.26 -83.98 -0.61 0.57 16 27 C -0.14 -1.42 10.07 -39.43 -0.40 -1.82 16 28 C -0.10 -1.00 10.01 -39.56 -0.40 -1.40 16 29 C -0.15 -1.81 10.03 -39.57 -0.40 -2.21 16 30 C -0.05 -0.79 10.09 -39.35 -0.40 -1.18 16 31 C -0.08 -1.17 6.36 -104.95 -0.67 -1.84 16 32 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.07 0.89 8.09 -51.93 -0.42 0.47 16 34 H 0.07 1.33 7.03 -51.93 -0.37 0.96 16 35 H 0.13 1.08 8.06 -52.48 -0.42 0.65 16 36 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 37 H 0.13 1.05 8.06 -52.49 -0.42 0.62 16 38 H 0.13 1.85 8.06 -52.49 -0.42 1.42 16 39 H 0.27 7.17 8.32 -40.82 -0.34 6.83 16 40 H 0.17 1.94 5.69 -52.49 -0.30 1.64 16 41 H 0.12 0.89 8.06 -52.48 -0.42 0.46 16 42 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 43 H 0.12 1.21 8.06 -52.49 -0.42 0.78 16 44 H 0.14 2.22 7.74 -52.49 -0.41 1.81 16 LS Contribution 393.51 15.07 5.93 5.93 Total: -1.00 -33.96 393.51 -12.31 -46.28 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -4.74 Total: 4.64 kcal Atomic # 6 Polarization: -15.09 SS G_CDS: -7.45 Total: -22.54 kcal Atomic # 7 Polarization: -53.46 SS G_CDS: 1.29 Total: -52.17 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 16 Polarization: 3.68 SS G_CDS: -2.32 Total: 1.36 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.96 -12.31 -46.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008090928.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 206.099 kcal (2) G-P(sol) polarization free energy of solvation -33.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 172.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.276 kcal (6) G-S(sol) free energy of system = (1) + (5) 159.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds