Wall clock time and date at job start Tue Mar 31 2020 06:23:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38135 * 120.03470 * 2 1 4 4 C 1.38254 * 120.06933 * 180.25130 * 3 2 1 5 5 C 1.38307 * 120.13378 * 359.73553 * 4 3 2 6 6 C 1.38099 * 120.06402 * 359.97438 * 5 4 3 7 7 C 1.38818 * 120.03228 * 179.71356 * 2 1 3 8 8 N 1.40143 * 120.06917 * 0.03029 * 7 2 1 9 9 C 1.37237 * 127.21014 * 89.87025 * 8 7 2 10 10 S 1.76198 * 126.40167 * 0.04564 * 9 8 7 11 11 C 1.76201 * 99.99864 * 180.31370 * 10 9 8 12 12 H 1.08005 * 119.99732 * 359.97438 * 11 10 9 13 13 C 1.38527 * 120.00080 * 179.97438 * 11 10 9 14 14 N 1.31718 * 119.99902 * 0.02562 * 13 11 10 15 15 Si 1.86806 * 120.00269 * 179.97438 * 13 11 10 16 16 H 1.48492 * 109.46937 * 89.99716 * 15 13 11 17 17 H 1.48491 * 109.47365 * 210.00202 * 15 13 11 18 18 H 1.48506 * 109.46947 * 330.00467 * 15 13 11 19 19 N 1.31482 * 107.18975 * 180.28728 * 9 8 7 20 20 N 1.28491 * 110.14181 * 359.73627 * 19 9 8 21 21 C 1.31670 * 110.03110 * 0.02562 * 20 19 9 22 22 C 1.47468 * 126.47358 * 180.02562 * 21 20 19 23 23 C 1.35986 * 126.70657 * 180.02562 * 22 21 20 24 24 N 1.36321 * 109.70385 * 180.02562 * 23 22 21 25 25 H 0.97003 * 124.86894 * 179.97438 * 24 23 22 26 26 C 1.37859 * 110.25033 * 359.97438 * 24 23 22 27 27 C 1.39152 * 133.18621 * 180.02562 * 26 24 23 28 28 C 1.37733 * 119.93163 * 179.97438 * 27 26 24 29 29 C 1.38791 * 120.64388 * 0.02562 * 28 27 26 30 30 C 1.37715 * 120.32215 * 359.97099 * 29 28 27 31 31 C 1.39371 * 119.67366 * 0.02641 * 30 29 28 32 32 H 1.08995 * 109.47765 * 270.28044 * 1 2 3 33 33 H 1.09002 * 109.46917 * 30.28555 * 1 2 3 34 34 H 1.09001 * 109.47122 * 150.28033 * 1 2 3 35 35 H 1.08003 * 119.96652 * 359.97438 * 3 2 1 36 36 H 1.07999 * 119.93706 * 179.72500 * 4 3 2 37 37 H 1.07994 * 119.96877 * 180.02562 * 5 4 3 38 38 H 1.07999 * 120.02937 * 180.02562 * 6 5 4 39 39 H 0.97004 * 119.99709 * 180.02562 * 14 13 11 40 40 H 1.08001 * 125.14418 * 0.02562 * 23 22 21 41 41 H 1.08005 * 120.02943 * 359.93640 * 27 26 24 42 42 H 1.08001 * 119.67977 * 180.02562 * 28 27 26 43 43 H 1.07996 * 119.84269 * 179.97438 * 29 28 27 44 44 H 1.07997 * 120.16417 * 179.74608 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1959 0.0000 4 6 3.5809 1.1967 -0.0052 5 6 4.2760 0.0010 -0.0050 6 6 3.5904 -1.1978 0.0010 7 6 2.2018 -1.2018 0.0060 8 7 1.5032 -2.4167 0.0114 9 6 1.0879 -3.1401 -1.0783 10 16 1.3341 -2.7158 -2.7706 11 6 0.5374 -4.0819 -3.5476 12 1 0.0863 -4.8573 -2.9462 13 6 0.4896 -4.1613 -4.9298 14 7 1.0402 -3.2158 -5.6632 15 14 -0.3545 -5.6100 -5.7535 16 1 -1.7881 -5.2896 -5.9704 17 1 0.2949 -5.8834 -7.0607 18 1 -0.2412 -6.8086 -4.8842 19 7 0.4673 -4.2063 -0.6234 20 7 0.4693 -4.2048 0.6615 21 6 1.0921 -3.1351 1.1103 22 6 1.3047 -2.7730 2.5240 23 6 1.9465 -1.6696 2.9927 24 7 1.9431 -1.6802 4.3559 25 1 2.3418 -0.9966 4.9168 26 6 1.2918 -2.8020 4.8227 27 6 1.0156 -3.2806 6.0998 28 6 0.3277 -4.4635 6.2565 29 6 -0.0951 -5.1879 5.1507 30 6 0.1682 -4.7314 3.8784 31 6 0.8633 -3.5360 3.7043 32 1 -0.3634 0.0050 1.0276 33 1 -0.3633 0.8874 -0.5183 34 1 -0.3633 -0.8925 -0.5095 35 1 1.6584 2.1312 -0.0004 36 1 4.1193 2.1329 -0.0097 37 1 5.3559 0.0047 -0.0087 38 1 4.1337 -2.1312 0.0017 39 1 1.0064 -3.2713 -6.6310 40 1 2.3916 -0.9012 2.3780 41 1 1.3409 -2.7253 6.9671 42 1 0.1151 -4.8310 7.2496 43 1 -0.6332 -6.1140 5.2886 44 1 -0.1584 -5.2992 3.0197 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000008090928.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:08 Heat of formation + Delta-G solvation = 142.101044 kcal Electronic energy + Delta-G solvation = -30886.124355 eV Core-core repulsion = 26895.333992 eV Total energy + Delta-G solvation = -3990.790364 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 376.105 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -43.74007 -42.16065 -40.42859 -37.84572 -35.77772 -34.74639 -33.80819 -33.67451 -31.33301 -30.88753 -30.35004 -29.45619 -28.00946 -27.77956 -25.02592 -23.93402 -23.54805 -23.36915 -22.61674 -22.34335 -20.75926 -20.05658 -19.08150 -18.41837 -17.47308 -17.45867 -16.99055 -16.97152 -16.60858 -16.47459 -15.87905 -15.56981 -15.43564 -15.17477 -15.00474 -14.80190 -14.71041 -14.58886 -14.20967 -13.69413 -13.51525 -13.41025 -13.12108 -13.02186 -12.98149 -12.69535 -12.65732 -12.61258 -12.43616 -12.23739 -12.03048 -11.82973 -11.82196 -11.70034 -11.31510 -11.13130 -10.83247 -10.32062 -9.94985 -9.74142 -9.27127 -8.99381 -8.53567 -8.36764 -6.31554 -0.06337 0.02051 0.28499 0.49467 0.69170 0.73068 1.33969 1.35313 1.47252 1.50213 1.74223 2.03730 2.12272 2.22569 2.58348 2.86458 2.96565 3.03203 3.41975 3.64307 3.71507 3.78657 3.82231 4.05770 4.09846 4.25330 4.30945 4.34792 4.41452 4.47214 4.54934 4.56281 4.59399 4.63828 4.64188 4.75569 4.88656 4.89381 5.05752 5.09938 5.19630 5.33379 5.43615 5.44531 5.44801 5.47075 5.54371 5.63959 5.74614 5.80872 6.14475 6.19234 6.20080 6.57101 6.93868 7.76990 8.56020 Molecular weight = 376.11amu Principal moments of inertia in cm(-1) A = 0.009109 B = 0.003395 C = 0.002611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3073.290271 B = 8244.286977 C =10720.554474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.073 4.073 3 C -0.106 4.106 4 C -0.085 4.085 5 C -0.107 4.107 6 C -0.112 4.112 7 C 0.082 3.918 8 N -0.424 5.424 9 C 0.162 3.838 10 S 0.124 5.876 11 C -0.561 4.561 12 H 0.082 0.918 13 C 0.034 3.966 14 N -0.904 5.904 15 Si 0.994 3.006 16 H -0.264 1.264 17 H -0.262 1.262 18 H -0.273 1.273 19 N -0.343 5.343 20 N -0.325 5.325 21 C 0.256 3.744 22 C -0.144 4.144 23 C 0.113 3.887 24 N -0.560 5.560 25 H 0.441 0.559 26 C 0.089 3.911 27 C -0.120 4.120 28 C -0.096 4.096 29 C -0.144 4.144 30 C -0.095 4.095 31 C -0.104 4.104 32 H 0.079 0.921 33 H 0.097 0.903 34 H 0.022 0.978 35 H 0.164 0.836 36 H 0.173 0.827 37 H 0.162 0.838 38 H 0.112 0.888 39 H 0.281 0.719 40 H 0.188 0.812 41 H 0.161 0.839 42 H 0.162 0.838 43 H 0.139 0.861 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.737 13.698 23.548 28.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.075 4.075 3 C -0.124 4.124 4 C -0.102 4.102 5 C -0.125 4.125 6 C -0.131 4.131 7 C -0.008 4.008 8 N -0.117 5.117 9 C -0.210 4.210 10 S 0.355 5.645 11 C -0.709 4.709 12 H 0.100 0.900 13 C -0.172 4.172 14 N -0.540 5.540 15 Si 0.815 3.185 16 H -0.189 1.189 17 H -0.186 1.186 18 H -0.198 1.198 19 N -0.187 5.187 20 N -0.164 5.164 21 C -0.011 4.011 22 C -0.155 4.155 23 C -0.021 4.021 24 N -0.164 5.164 25 H 0.283 0.717 26 C -0.018 4.018 27 C -0.140 4.140 28 C -0.115 4.115 29 C -0.163 4.163 30 C -0.114 4.114 31 C -0.109 4.109 32 H 0.098 0.902 33 H 0.116 0.884 34 H 0.042 0.958 35 H 0.181 0.819 36 H 0.190 0.810 37 H 0.180 0.820 38 H 0.130 0.870 39 H 0.090 0.910 40 H 0.205 0.795 41 H 0.178 0.822 42 H 0.180 0.820 43 H 0.157 0.843 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 6.587 13.437 22.866 27.327 hybrid contribution -0.549 -1.225 -0.668 1.499 sum 6.038 12.213 22.198 26.045 Atomic orbital electron populations 1.20755 0.91331 1.02536 1.02543 1.20174 0.96461 0.92215 0.98622 1.21347 0.95056 0.96620 0.99375 1.21757 0.93629 0.99433 0.95408 1.21400 1.01712 0.90460 0.98971 1.21357 0.91551 1.00521 0.99679 1.17774 0.91365 0.82465 1.09197 1.43704 1.45338 1.18745 1.03922 1.28163 1.01342 0.93162 0.98359 1.83135 1.68916 1.31142 0.81262 1.23297 1.42834 1.10139 0.94634 0.90026 1.25877 0.95212 1.00085 0.96008 1.70044 1.42741 1.34062 1.07122 0.85027 0.78609 0.77379 0.77487 1.18931 1.18629 1.19798 1.74568 1.21986 1.19273 1.02867 1.74196 1.20088 1.18857 1.03255 1.22452 0.99559 0.90511 0.88541 1.17475 1.12549 1.00158 0.85271 1.22016 0.98527 0.97578 0.84002 1.41449 1.48851 1.21123 1.05020 0.71688 1.18396 0.99609 0.89126 0.94620 1.20436 1.02350 0.98028 0.93222 1.21243 0.96857 0.93819 0.99619 1.21224 1.02186 1.01456 0.91408 1.20733 0.97720 0.94690 0.98240 1.18981 1.03568 0.97150 0.91182 0.90250 0.88429 0.95841 0.81895 0.80962 0.82039 0.86950 0.90988 0.79489 0.82186 0.82008 0.84331 0.88061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.34 9.77 71.24 0.70 -2.64 16 2 C -0.07 -1.98 5.53 -19.75 -0.11 -2.09 16 3 C -0.11 -1.85 9.70 22.25 0.22 -1.63 16 4 C -0.08 -1.17 10.04 22.29 0.22 -0.94 16 5 C -0.11 -1.89 10.04 22.25 0.22 -1.67 16 6 C -0.11 -3.06 9.56 22.39 0.21 -2.85 16 7 C 0.08 2.66 3.44 38.10 0.13 2.79 16 8 N -0.42 -18.01 1.94 -337.76 -0.65 -18.67 16 9 C 0.16 8.45 7.54 179.26 1.35 9.80 16 10 S 0.12 6.83 21.58 -56.49 -1.22 5.61 16 11 C -0.56 -34.17 9.36 67.89 0.64 -33.53 16 12 H 0.08 5.23 6.92 -2.91 -0.02 5.21 16 13 C 0.03 1.98 5.49 84.78 0.47 2.44 16 14 N -0.90 -52.58 13.22 21.60 0.29 -52.29 16 15 Si 0.99 45.87 29.55 68.60 2.03 47.90 16 16 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 17 H -0.26 -11.17 7.11 99.48 0.71 -10.47 16 18 H -0.27 -12.83 7.11 99.48 0.71 -12.12 16 19 N -0.34 -19.52 11.02 -56.31 -0.62 -20.14 16 20 N -0.32 -16.74 11.92 -50.88 -0.61 -17.35 16 21 C 0.26 11.14 7.94 135.98 1.08 12.22 16 22 C -0.14 -4.94 6.28 -18.98 -0.12 -5.06 16 23 C 0.11 2.72 11.14 83.47 0.93 3.65 16 24 N -0.56 -9.68 6.03 -186.74 -1.13 -10.80 16 25 H 0.44 3.46 8.96 -92.71 -0.83 2.63 16 26 C 0.09 2.00 7.26 38.96 0.28 2.28 16 27 C -0.12 -1.98 10.07 22.37 0.23 -1.76 16 28 C -0.10 -1.65 10.01 22.28 0.22 -1.43 16 29 C -0.14 -3.38 10.03 22.28 0.22 -3.15 16 30 C -0.09 -3.06 10.09 22.42 0.23 -2.84 16 31 C -0.10 -3.31 6.36 -20.07 -0.13 -3.44 16 32 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.10 2.27 8.09 -2.39 -0.02 2.25 16 34 H 0.02 0.90 7.03 -2.39 -0.02 0.88 16 35 H 0.16 1.81 8.06 -2.91 -0.02 1.79 16 36 H 0.17 0.98 8.06 -2.91 -0.02 0.96 16 37 H 0.16 1.85 8.06 -2.91 -0.02 1.82 16 38 H 0.11 3.38 8.06 -2.91 -0.02 3.35 16 39 H 0.28 15.00 8.32 -92.71 -0.77 14.23 16 40 H 0.19 3.84 5.69 -2.91 -0.02 3.83 16 41 H 0.16 1.35 8.06 -2.91 -0.02 1.32 16 42 H 0.16 1.55 8.06 -2.91 -0.02 1.52 16 43 H 0.14 2.67 8.06 -2.91 -0.02 2.64 16 44 H 0.10 3.85 7.74 -2.91 -0.02 3.83 16 Total: -1.00 -86.15 393.51 5.32 -80.84 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: 0.24 Total: 14.74 kcal Atomic # 6 Polarization: -36.82 SS G_CDS: 6.99 Total: -29.83 kcal Atomic # 7 Polarization: -116.53 SS G_CDS: -2.72 Total: -119.25 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.90 kcal Atomic # 16 Polarization: 6.83 SS G_CDS: -1.22 Total: 5.61 kcal Total: -86.15 5.32 -80.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008090928.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 222.936 kcal (2) G-P(sol) polarization free energy of solvation -86.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 142.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds