Wall clock time and date at job start Tue Mar 31 2020 06:11:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34236 * 116.99741 * 2 1 4 4 O 1.20823 * 120.00049 * 0.02562 * 3 2 1 5 5 C 1.50707 * 119.99491 * 180.02562 * 3 2 1 6 6 N 1.46504 * 109.46732 * 180.02562 * 5 3 2 7 7 C 1.34844 * 125.09733 * 270.36126 * 6 5 3 8 8 O 1.21721 * 126.92005 * 0.02562 * 7 6 5 9 9 C 1.47106 * 106.16303 * 180.14821 * 7 6 5 10 10 C 1.35790 * 127.39829 * 179.83153 * 9 7 6 11 11 C 1.46720 * 120.00301 * 170.39626 * 10 9 7 12 12 C 1.39984 * 120.23263 * 311.76725 * 11 10 9 13 13 C 1.37743 * 119.88942 * 179.97438 * 12 11 10 14 14 C 1.38629 * 120.35756 * 359.97438 * 13 12 11 15 15 C 1.38087 * 120.46709 * 0.02562 * 14 13 12 16 16 C 1.38737 * 120.10380 * 359.97438 * 15 14 13 17 17 O 1.35525 * 120.17707 * 180.02562 * 16 15 14 18 18 C 1.34767 * 117.00108 * 354.32074 * 17 16 15 19 19 H 1.07998 * 120.00098 * 5.08019 * 18 17 16 20 20 C 1.38700 * 120.00276 * 185.07242 * 18 17 16 21 21 N 1.31521 * 120.00087 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00175 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46849 * 90.00464 * 22 20 18 24 24 H 1.48499 * 109.47332 * 210.00099 * 22 20 18 25 25 H 1.48498 * 109.46972 * 330.00453 * 22 20 18 26 26 N 1.40006 * 105.21298 * 359.57313 * 9 7 6 27 27 C 1.46497 * 126.11131 * 180.26303 * 26 9 7 28 28 C 1.34182 * 125.09674 * 90.02061 * 6 5 3 29 29 S 1.71202 * 124.48351 * 0.02650 * 28 6 5 30 30 H 1.08998 * 109.47184 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46938 * 299.99748 * 1 2 3 32 32 H 1.09002 * 109.47320 * 59.99952 * 1 2 3 33 33 H 1.08993 * 109.47437 * 60.00227 * 5 3 2 34 34 H 1.09004 * 109.47041 * 299.99934 * 5 3 2 35 35 H 1.08002 * 119.99413 * 350.39190 * 10 9 7 36 36 H 1.08001 * 120.05382 * 0.02562 * 12 11 10 37 37 H 1.08003 * 119.82344 * 179.97438 * 13 12 11 38 38 H 1.07996 * 119.76871 * 180.02562 * 14 13 12 39 39 H 1.08002 * 119.94165 * 180.27250 * 15 14 13 40 40 H 0.96992 * 120.00544 * 179.97438 * 21 20 18 41 41 H 1.08997 * 109.47234 * 86.80535 * 27 26 9 42 42 H 1.09000 * 109.47080 * 206.80094 * 27 26 9 43 43 H 1.08999 * 109.47034 * 326.80179 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5664 1.2749 -0.0006 6 7 3.9817 2.6798 0.0002 7 6 4.1944 3.4260 -1.1027 8 8 4.0799 3.0686 -2.2606 9 6 4.5955 4.7582 -0.6247 10 6 4.9153 5.8425 -1.3769 11 6 5.0893 7.1523 -0.7392 12 6 4.1324 7.6291 0.1644 13 6 4.3032 8.8596 0.7594 14 6 5.4188 9.6295 0.4689 15 6 6.3719 9.1736 -0.4202 16 6 6.2193 7.9371 -1.0306 17 8 7.1541 7.4880 -1.9030 18 6 8.1486 8.3383 -2.2255 19 1 8.2214 9.2962 -1.7321 20 6 9.0789 7.9832 -3.1910 21 7 8.9902 6.8168 -3.7922 22 14 10.4571 9.1621 -3.6386 23 1 11.6317 8.9039 -2.7675 24 1 10.8401 8.9595 -5.0589 25 1 9.9950 10.5600 -3.4450 26 7 4.5709 4.6700 0.7724 27 6 4.8906 5.7481 1.7113 28 6 4.2013 3.4188 1.0984 29 16 4.0338 2.8446 2.7025 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 3.9557 0.7810 -0.8908 34 1 3.9564 0.7806 0.8892 35 1 5.0415 5.7407 -2.4447 36 1 3.2620 7.0327 0.3952 37 1 3.5640 9.2266 1.4561 38 1 5.5434 10.5927 0.9412 39 1 7.2400 9.7785 -0.6370 40 1 9.6405 6.5686 -4.4677 41 1 3.9963 6.3416 1.9013 42 1 5.2483 5.3201 2.6478 43 1 5.6651 6.3847 1.2835 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000008091456.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:44 Heat of formation + Delta-G solvation = -29.649571 kcal Electronic energy + Delta-G solvation = -31885.289107 eV Core-core repulsion = 27411.616313 eV Total energy + Delta-G solvation = -4473.672795 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 376.097 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.76669 -40.58109 -39.63890 -38.11285 -37.19982 -36.78510 -35.69615 -33.03377 -32.60903 -31.22112 -29.71310 -29.08031 -27.81071 -26.69760 -25.84886 -25.39126 -22.78790 -22.27532 -21.65636 -20.95284 -20.17573 -18.45929 -18.27018 -18.16416 -17.35633 -17.01981 -16.92843 -16.48449 -16.19845 -15.84168 -15.25239 -15.17662 -15.01669 -14.63943 -14.48293 -14.28949 -13.94436 -13.90870 -13.83794 -13.75082 -13.07780 -12.84897 -12.72430 -12.56512 -12.40189 -12.19209 -12.01808 -11.65434 -11.44994 -11.31568 -11.22984 -11.06252 -11.04431 -10.94003 -10.69711 -10.52686 -10.49346 -9.79769 -9.30141 -9.14617 -8.43947 -7.89341 -7.74530 -7.35176 -6.83642 -4.39893 0.05566 1.42480 1.49362 1.83710 1.92134 1.97219 2.14457 2.55703 2.59851 2.88025 2.92607 2.93682 2.99210 3.65548 3.87531 4.11138 4.41378 4.49247 4.66364 4.77458 4.80904 4.86713 4.90611 4.96049 5.02993 5.21852 5.25487 5.31060 5.34711 5.38235 5.55858 5.63171 5.76688 5.78306 5.80823 6.04510 6.05803 6.23635 6.34610 6.54524 6.67964 6.70621 6.80814 6.93981 6.99908 7.31347 7.34164 7.44707 7.58474 8.59661 9.20053 10.31552 Molecular weight = 376.10amu Principal moments of inertia in cm(-1) A = 0.012397 B = 0.002632 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2258.075589 B =10634.094873 C =11769.571838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.353 6.353 3 C 0.455 3.545 4 O -0.491 6.491 5 C 0.127 3.873 6 N -0.525 5.525 7 C 0.558 3.442 8 O -0.462 6.462 9 C -0.078 4.078 10 C 0.103 3.897 11 C -0.201 4.201 12 C -0.038 4.038 13 C -0.220 4.220 14 C -0.048 4.048 15 C -0.230 4.230 16 C 0.176 3.824 17 O -0.153 6.153 18 C -0.394 4.394 19 H 0.100 0.900 20 C 0.045 3.955 21 N -0.842 5.842 22 Si 0.946 3.054 23 H -0.270 1.270 24 H -0.274 1.274 25 H -0.264 1.264 26 N -0.466 5.466 27 C 0.079 3.921 28 C 0.528 3.472 29 S -0.586 6.586 30 H 0.104 0.896 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.144 0.856 34 H 0.154 0.846 35 H 0.160 0.840 36 H 0.117 0.883 37 H 0.115 0.885 38 H 0.114 0.886 39 H 0.134 0.866 40 H 0.278 0.722 41 H 0.089 0.911 42 H 0.101 0.899 43 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.179 -4.969 5.940 12.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.269 6.269 3 C 0.295 3.705 4 O -0.377 6.377 5 C 0.004 3.996 6 N -0.249 5.249 7 C 0.349 3.651 8 O -0.334 6.334 9 C -0.177 4.177 10 C 0.078 3.922 11 C -0.203 4.203 12 C -0.056 4.056 13 C -0.239 4.239 14 C -0.066 4.066 15 C -0.249 4.249 16 C 0.118 3.882 17 O -0.053 6.053 18 C -0.469 4.469 19 H 0.117 0.883 20 C -0.163 4.163 21 N -0.474 5.474 22 Si 0.769 3.231 23 H -0.195 1.195 24 H -0.199 1.199 25 H -0.189 1.189 26 N -0.164 5.164 27 C -0.061 4.061 28 C 0.176 3.824 29 S -0.452 6.452 30 H 0.122 0.878 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.161 0.839 34 H 0.172 0.828 35 H 0.177 0.823 36 H 0.135 0.865 37 H 0.133 0.867 38 H 0.132 0.868 39 H 0.152 0.848 40 H 0.088 0.912 41 H 0.107 0.893 42 H 0.119 0.881 43 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -9.362 -5.523 5.980 12.406 hybrid contribution 0.476 0.994 -1.040 1.515 sum -8.886 -4.529 4.940 11.130 Atomic orbital electron populations 1.23310 0.75644 1.03867 1.02810 1.86453 1.23907 1.32399 1.84177 1.23660 0.91829 0.82107 0.72927 1.90723 1.66593 1.36314 1.44088 1.21113 0.89001 0.79779 1.09689 1.45475 1.60088 1.12398 1.06978 1.18519 0.76950 0.85062 0.84598 1.90924 1.49392 1.76536 1.16501 1.20179 1.18759 0.95795 0.82951 1.21969 0.82134 0.88421 0.99654 1.17746 0.98256 0.95966 1.08282 1.20965 0.96620 0.95510 0.92534 1.20534 1.00568 0.96443 1.06375 1.20989 0.92795 0.98166 0.94676 1.21167 1.02671 0.97998 1.03035 1.19287 0.88050 0.91055 0.89767 1.83862 1.30766 1.40239 1.50392 1.21491 1.03873 0.99406 1.22158 0.88315 1.25422 0.98574 0.97341 0.94978 1.69996 1.34927 1.19470 1.22967 0.85627 0.79555 0.79347 0.78543 1.19492 1.19890 1.18854 1.44954 1.56239 1.09355 1.05804 1.22763 1.03320 0.87390 0.92588 1.22645 0.82980 0.83500 0.93284 1.93244 1.71986 1.80190 0.99782 0.87754 0.91613 0.91803 0.83883 0.82825 0.82274 0.86545 0.86700 0.86765 0.84819 0.91234 0.89295 0.88102 0.87751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.31 10.56 101.05 1.07 1.38 16 2 O -0.35 -3.89 10.57 -39.27 -0.41 -4.30 16 3 C 0.45 6.07 8.03 36.01 0.29 6.36 16 4 O -0.49 -8.20 16.18 -18.75 -0.30 -8.50 16 5 C 0.13 1.52 6.23 -5.19 -0.03 1.48 16 6 N -0.52 -8.01 2.13 -120.02 -0.26 -8.27 16 7 C 0.56 9.45 8.09 -12.63 -0.10 9.35 16 8 O -0.46 -8.54 17.85 5.17 0.09 -8.45 16 9 C -0.08 -1.30 6.60 -81.40 -0.54 -1.84 16 10 C 0.10 1.77 9.31 -37.03 -0.34 1.43 16 11 C -0.20 -3.43 3.92 -104.92 -0.41 -3.84 16 12 C -0.04 -0.55 5.68 -39.11 -0.22 -0.77 16 13 C -0.22 -2.95 10.02 -39.62 -0.40 -3.35 16 14 C -0.05 -0.68 10.03 -39.49 -0.40 -1.08 16 15 C -0.23 -4.01 9.15 -39.45 -0.36 -4.37 16 16 C 0.18 3.47 6.67 -38.50 -0.26 3.22 16 17 O -0.15 -3.65 9.21 0.92 0.01 -3.64 16 18 C -0.39 -9.46 9.49 30.90 0.29 -9.17 16 19 H 0.10 2.15 5.21 -52.49 -0.27 1.88 16 20 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 21 N -0.84 -22.01 13.67 55.48 0.76 -21.26 16 22 Si 0.95 18.16 29.55 -169.99 -5.02 13.13 16 23 H -0.27 -5.10 7.11 56.52 0.40 -4.69 16 24 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 25 H -0.26 -4.86 7.11 56.52 0.40 -4.45 16 26 N -0.47 -7.29 3.20 -121.19 -0.39 -7.68 16 27 C 0.08 1.07 8.54 59.85 0.51 1.58 16 28 C 0.53 8.57 7.66 -87.72 -0.67 7.90 16 29 S -0.59 -10.21 28.94 -107.50 -3.11 -13.32 16 30 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.57 8.13 -51.93 -0.42 0.15 16 32 H 0.06 0.54 8.13 -51.93 -0.42 0.12 16 33 H 0.14 1.33 8.06 -51.93 -0.42 0.91 16 34 H 0.15 1.59 7.42 -51.93 -0.39 1.20 16 35 H 0.16 2.81 8.06 -52.49 -0.42 2.39 16 36 H 0.12 1.56 6.87 -52.49 -0.36 1.20 16 37 H 0.11 1.27 8.06 -52.48 -0.42 0.85 16 38 H 0.11 1.33 8.06 -52.49 -0.42 0.90 16 39 H 0.13 2.34 5.64 -52.49 -0.30 2.04 16 40 H 0.28 6.69 8.31 -40.82 -0.34 6.35 16 41 H 0.09 1.08 5.92 -51.93 -0.31 0.77 16 42 H 0.10 1.33 7.42 -51.93 -0.39 0.94 16 43 H 0.10 1.50 5.74 -51.93 -0.30 1.20 16 LS Contribution 387.26 15.07 5.84 5.84 Total: -1.00 -31.28 387.26 -8.86 -40.15 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -4.40 Total: 7.05 kcal Atomic # 6 Polarization: 10.93 SS G_CDS: -1.67 Total: 9.26 kcal Atomic # 7 Polarization: -37.32 SS G_CDS: 0.12 Total: -37.21 kcal Atomic # 8 Polarization: -24.28 SS G_CDS: -0.62 Total: -24.90 kcal Atomic # 14 Polarization: 18.16 SS G_CDS: -5.02 Total: 13.13 kcal Atomic # 16 Polarization: -10.21 SS G_CDS: -3.11 Total: -13.32 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -31.28 -8.86 -40.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008091456.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.497 kcal (2) G-P(sol) polarization free energy of solvation -31.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds