Wall clock time and date at job start Tue Mar 31 2020 05:33:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46752 * 2 1 4 4 C 1.53000 * 109.46752 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47141 * 179.97438 * 4 3 2 6 6 C 1.33242 * 117.98359 * 270.07500 * 5 4 3 7 7 O 1.21276 * 118.15747 * 2.21226 * 6 5 4 8 8 C 1.50178 * 123.59638 * 182.30214 * 6 5 4 9 9 C 1.53069 * 109.82098 * 342.28284 * 8 6 5 10 10 C 1.53344 * 108.42740 * 48.94141 * 9 8 6 11 11 H 1.08998 * 109.59953 * 52.22695 * 10 9 8 12 12 C 1.50704 * 109.60309 * 172.54681 * 10 9 8 13 13 O 1.21212 * 119.99602 * 120.00255 * 12 10 9 14 14 O 1.34310 * 119.99883 * 300.00105 * 12 10 9 15 15 C 1.34925 * 116.99412 * 179.97438 * 14 12 10 16 16 H 1.07999 * 120.00212 * 0.02562 * 15 14 12 17 17 C 1.38757 * 119.99587 * 180.02562 * 15 14 12 18 18 N 1.31442 * 119.99864 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99735 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47303 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.47004 * 120.00138 * 19 17 15 22 22 H 1.48499 * 109.46896 * 239.99861 * 19 17 15 23 23 C 1.45754 * 117.94915 * 89.99836 * 5 4 3 24 24 H 1.08997 * 109.30011 * 40.61341 * 23 5 4 25 25 C 1.50698 * 109.30015 * 281.23981 * 23 5 4 26 26 C 1.38271 * 119.94317 * 318.68752 * 25 23 5 27 27 C 1.38149 * 120.05477 * 179.72385 * 26 25 23 28 28 C 1.38736 * 119.94108 * 0.55244 * 27 26 25 29 29 O 1.35903 * 120.05324 * 179.74842 * 28 27 26 30 30 C 1.42903 * 116.99788 * 359.97438 * 29 28 27 31 31 C 1.38725 * 119.89168 * 359.71879 * 28 27 26 32 32 C 1.38148 * 119.94345 * 0.02562 * 31 28 27 33 33 H 1.08997 * 109.47357 * 60.00267 * 1 2 3 34 34 H 1.09009 * 109.46894 * 180.02562 * 1 2 3 35 35 H 1.08994 * 109.47224 * 300.00061 * 1 2 3 36 36 H 1.08994 * 109.47224 * 239.99939 * 2 1 3 37 37 H 1.08999 * 109.46851 * 119.99642 * 2 1 3 38 38 H 1.08994 * 109.47306 * 59.99990 * 3 2 1 39 39 H 1.08999 * 109.47150 * 299.99458 * 3 2 1 40 40 H 1.09001 * 109.47568 * 60.00145 * 4 3 2 41 41 H 1.08997 * 109.47357 * 299.99733 * 4 3 2 42 42 H 1.09002 * 109.40116 * 222.19493 * 8 6 5 43 43 H 1.09003 * 109.39968 * 102.37119 * 8 6 5 44 44 H 1.09001 * 109.66951 * 168.67826 * 9 8 6 45 45 H 1.08995 * 109.67237 * 289.17321 * 9 8 6 46 46 H 0.96999 * 119.99701 * 180.02562 * 18 17 15 47 47 H 1.07999 * 119.97323 * 359.97438 * 26 25 23 48 48 H 1.08003 * 120.03139 * 180.27138 * 27 26 25 49 49 H 1.08995 * 109.47200 * 60.00259 * 30 29 28 50 50 H 1.09004 * 109.46490 * 180.02562 * 30 29 28 51 51 H 1.08995 * 109.47130 * 299.99656 * 30 29 28 52 52 H 1.08000 * 120.03044 * 180.02562 * 31 28 27 53 53 H 1.07996 * 119.97159 * 180.02562 * 32 31 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 7 4.0582 2.8237 -0.0013 6 6 4.2647 3.4133 -1.1782 7 8 3.9991 2.7908 -2.1845 8 6 4.8097 4.8049 -1.3262 9 6 4.6660 5.5620 -0.0037 10 6 5.2099 4.6761 1.1236 11 1 6.2143 4.3371 0.8700 12 6 5.2511 5.4618 2.4090 13 8 4.6148 5.0858 3.3697 14 8 5.9928 6.5786 2.4899 15 6 5.9852 7.2348 3.6688 16 1 5.4001 6.8561 4.4939 17 6 6.7291 8.3961 3.8212 18 7 7.4407 8.8573 2.8169 19 14 6.7191 9.3042 5.4536 20 1 5.8460 8.5844 6.4152 21 1 8.1013 9.3682 5.9929 22 1 6.2027 10.6817 5.2506 23 6 4.2865 3.4682 1.2860 24 1 4.7444 2.7540 1.9703 25 6 2.9676 3.9226 1.8563 26 6 2.0215 4.5015 1.0308 27 6 0.8095 4.9137 1.5500 28 6 0.5466 4.7568 2.9032 29 8 -0.6429 5.1661 3.4174 30 6 -1.5766 5.7503 2.5069 31 6 1.4998 4.1808 3.7304 32 6 2.7081 3.7654 3.2052 33 1 -0.3634 0.5138 -0.8900 34 1 -0.3633 -1.0278 0.0005 35 1 -0.3633 0.5138 0.8899 36 1 1.8933 -0.5138 -0.8899 37 1 1.8933 -0.5138 0.8900 38 1 1.6766 1.9564 0.8899 39 1 1.6766 1.9563 -0.8900 40 1 3.9330 0.9289 -0.8909 41 1 3.9337 0.9286 0.8891 42 1 4.2568 5.3292 -2.1056 43 1 5.8632 4.7537 -1.6016 44 1 5.2358 6.4902 -0.0485 45 1 3.6149 5.7852 0.1790 46 1 7.9610 9.6689 2.9235 47 1 2.2285 4.6279 -0.0216 48 1 0.0690 5.3618 0.9041 49 1 -1.8265 5.0282 1.7296 50 1 -2.4812 6.0326 3.0456 51 1 -1.1342 6.6361 2.0513 52 1 1.2973 4.0572 4.7840 53 1 3.4503 3.3166 3.8487 RHF calculation, no. of doubly occupied orbitals= 71 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000008409667.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:49 Heat of formation + Delta-G solvation = -140.443483 kcal Electronic energy + Delta-G solvation = -37030.791363 eV Core-core repulsion = 32446.653413 eV Total energy + Delta-G solvation = -4584.137950 eV No. of doubly occupied orbitals = 71 Molecular weight (most abundant/longest-lived isotopes) = 375.192 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -42.51372 -40.81432 -40.74328 -38.89948 -37.24482 -37.05253 -36.54694 -34.52171 -34.15059 -32.13268 -31.97914 -30.19268 -29.80693 -28.22631 -27.40130 -25.88197 -24.98366 -24.05497 -23.33115 -22.57965 -22.05226 -21.61578 -19.79859 -19.57314 -18.89996 -18.57787 -17.69578 -17.60967 -17.15544 -16.74699 -16.60887 -16.53988 -16.30966 -16.20107 -16.11182 -15.81525 -15.19189 -15.11997 -14.86283 -14.66327 -14.38474 -14.37733 -14.05912 -13.86757 -13.73595 -13.59021 -13.49876 -13.30727 -13.09233 -12.99382 -12.77390 -12.61820 -12.55601 -12.31805 -12.27154 -12.14974 -12.11796 -12.00996 -11.89230 -11.85978 -11.65709 -11.59097 -11.38382 -10.77616 -10.68868 -10.63671 -9.86975 -9.69215 -8.93043 -8.48091 -6.24707 0.45670 0.52704 1.32797 1.36188 1.52471 1.56059 1.70947 1.81011 2.17294 2.40433 2.76199 2.82691 3.04071 3.50445 3.56708 3.61203 3.78359 3.90589 3.95516 3.99586 4.04845 4.06723 4.20541 4.27244 4.30078 4.33357 4.36418 4.40508 4.49228 4.57978 4.59613 4.67012 4.69403 4.76720 4.78641 4.82670 4.83471 4.90691 4.95705 5.00158 5.05957 5.08605 5.15887 5.24936 5.26363 5.34063 5.37070 5.41215 5.43187 5.51077 5.77699 5.87991 5.91086 6.37541 6.48576 6.78480 6.99167 7.08193 7.87020 8.72443 Molecular weight = 375.19amu Principal moments of inertia in cm(-1) A = 0.008765 B = 0.003615 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3193.811980 B = 7743.715135 C = 9731.089728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.117 4.117 3 C -0.125 4.125 4 C 0.109 3.891 5 N -0.585 5.585 6 C 0.517 3.483 7 O -0.583 6.583 8 C -0.125 4.125 9 C -0.116 4.116 10 C -0.073 4.073 11 H 0.123 0.877 12 C 0.409 3.591 13 O -0.548 6.548 14 O -0.241 6.241 15 C -0.405 4.405 16 H 0.083 0.917 17 C -0.003 4.003 18 N -0.903 5.903 19 Si 1.006 2.994 20 H -0.265 1.265 21 H -0.263 1.263 22 H -0.266 1.266 23 C 0.216 3.784 24 H 0.107 0.893 25 C -0.135 4.135 26 C -0.064 4.064 27 C -0.225 4.225 28 C 0.123 3.877 29 O -0.337 6.337 30 C 0.020 3.980 31 C -0.182 4.182 32 C -0.005 4.005 33 H 0.048 0.952 34 H 0.065 0.935 35 H 0.047 0.953 36 H 0.065 0.935 37 H 0.071 0.929 38 H 0.061 0.939 39 H 0.046 0.954 40 H 0.081 0.919 41 H 0.094 0.906 42 H 0.118 0.882 43 H 0.120 0.880 44 H 0.081 0.919 45 H 0.075 0.925 46 H 0.275 0.725 47 H 0.120 0.880 48 H 0.141 0.859 49 H 0.066 0.934 50 H 0.120 0.880 51 H 0.056 0.944 52 H 0.127 0.873 53 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.476 -12.007 -5.215 18.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.155 4.155 3 C -0.164 4.164 4 C -0.013 4.013 5 N -0.314 5.314 6 C 0.307 3.693 7 O -0.465 6.465 8 C -0.164 4.164 9 C -0.154 4.154 10 C -0.093 4.093 11 H 0.141 0.859 12 C 0.256 3.744 13 O -0.444 6.444 14 O -0.150 6.150 15 C -0.481 4.481 16 H 0.100 0.900 17 C -0.203 4.203 18 N -0.541 5.541 19 Si 0.827 3.173 20 H -0.189 1.189 21 H -0.188 1.188 22 H -0.191 1.191 23 C 0.112 3.888 24 H 0.125 0.875 25 C -0.137 4.137 26 C -0.083 4.083 27 C -0.244 4.244 28 C 0.078 3.922 29 O -0.251 6.251 30 C -0.074 4.074 31 C -0.201 4.201 32 C -0.024 4.024 33 H 0.067 0.933 34 H 0.084 0.916 35 H 0.067 0.933 36 H 0.083 0.917 37 H 0.090 0.910 38 H 0.080 0.920 39 H 0.064 0.936 40 H 0.099 0.901 41 H 0.112 0.888 42 H 0.136 0.864 43 H 0.138 0.862 44 H 0.100 0.900 45 H 0.094 0.906 46 H 0.084 0.916 47 H 0.138 0.862 48 H 0.159 0.841 49 H 0.084 0.916 50 H 0.138 0.862 51 H 0.074 0.926 52 H 0.145 0.855 53 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -12.686 -12.237 -5.350 18.420 hybrid contribution 0.148 0.946 0.653 1.158 sum -12.538 -11.292 -4.698 17.515 Atomic orbital electron populations 1.21726 0.95575 1.01989 1.01334 1.21422 0.96204 0.95390 1.02491 1.21894 0.94968 0.97956 1.01556 1.21684 0.94622 0.81269 1.03699 1.47305 1.64454 1.14942 1.04733 1.20443 0.77107 0.89299 0.82447 1.90682 1.53765 1.65445 1.36582 1.21696 1.05138 0.90978 0.98598 1.21741 1.02730 0.98813 0.92123 1.21041 1.02250 0.94556 0.91424 0.85937 1.23570 0.78770 0.81482 0.90627 1.90555 1.43767 1.69627 1.40434 1.83871 1.59302 1.34412 1.37408 1.21341 1.30839 1.07122 0.88837 0.89953 1.26333 0.94581 0.96473 1.02937 1.70071 1.28487 1.22677 1.32825 0.84703 0.78971 0.77848 0.75797 1.18902 1.18801 1.19059 1.19413 0.91927 0.93283 0.84195 0.87507 1.19758 0.95898 1.03915 0.94081 1.20711 0.92562 0.95822 0.99170 1.21228 1.00017 1.08896 0.94262 1.19115 0.85955 0.94808 0.92307 1.86025 1.24549 1.75473 1.39097 1.23294 0.91851 0.97711 0.94541 1.20496 0.93843 1.05728 1.00053 1.20710 0.93188 0.94357 0.94129 0.93316 0.91635 0.93336 0.91673 0.91023 0.92034 0.93563 0.90069 0.88784 0.86351 0.86160 0.89986 0.90609 0.91562 0.86209 0.84125 0.91579 0.86184 0.92578 0.85540 0.85421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.48 9.91 71.98 0.71 -1.77 16 2 C -0.12 -2.03 5.93 30.59 0.18 -1.85 16 3 C -0.13 -2.71 4.88 30.59 0.15 -2.56 16 4 C 0.11 2.38 5.14 86.38 0.44 2.82 16 5 N -0.58 -14.56 1.95 -806.90 -1.57 -16.14 16 6 C 0.52 14.00 6.49 87.73 0.57 14.57 16 7 O -0.58 -18.90 16.20 -3.02 -0.05 -18.94 16 8 C -0.12 -2.97 6.03 29.71 0.18 -2.79 16 9 C -0.12 -3.41 4.97 30.73 0.15 -3.25 16 10 C -0.07 -2.34 2.49 -11.45 -0.03 -2.36 16 11 H 0.12 3.53 8.12 -2.39 -0.02 3.52 16 12 C 0.41 18.02 6.89 71.24 0.49 18.52 16 13 O -0.55 -25.17 10.77 20.77 0.22 -24.95 16 14 O -0.24 -13.05 9.54 14.83 0.14 -12.91 16 15 C -0.41 -23.16 9.65 67.94 0.66 -22.51 16 16 H 0.08 4.79 6.86 -2.91 -0.02 4.77 16 17 C 0.00 -0.18 5.49 84.88 0.47 0.29 16 18 N -0.90 -51.58 13.67 21.63 0.30 -51.29 16 19 Si 1.01 42.54 29.55 68.60 2.03 44.57 16 20 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 21 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 22 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 23 C 0.22 5.94 2.23 44.36 0.10 6.04 16 24 H 0.11 2.74 7.76 -2.39 -0.02 2.72 16 25 C -0.14 -4.05 2.57 -19.85 -0.05 -4.10 16 26 C -0.06 -1.85 6.14 22.26 0.14 -1.72 16 27 C -0.23 -6.30 9.04 22.37 0.20 -6.10 16 28 C 0.12 3.75 6.69 22.51 0.15 3.90 16 29 O -0.34 -9.38 10.50 -92.45 -0.97 -10.35 16 30 C 0.02 0.37 9.81 113.37 1.11 1.48 16 31 C -0.18 -5.88 9.99 22.36 0.22 -5.65 16 32 C -0.01 -0.17 6.94 22.25 0.15 -0.02 16 33 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 35 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.06 1.48 6.05 -2.39 -0.01 1.46 16 39 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.08 1.88 7.20 -2.39 -0.02 1.86 16 41 H 0.09 1.70 7.86 -2.39 -0.02 1.68 16 42 H 0.12 2.49 8.14 -2.39 -0.02 2.47 16 43 H 0.12 2.52 8.14 -2.39 -0.02 2.50 16 44 H 0.08 2.69 7.97 -2.39 -0.02 2.68 16 45 H 0.08 2.29 4.85 -2.39 -0.01 2.28 16 46 H 0.28 14.39 8.31 -92.71 -0.77 13.62 16 47 H 0.12 3.29 5.68 -2.91 -0.02 3.28 16 48 H 0.14 3.22 6.30 -2.91 -0.02 3.21 16 49 H 0.07 1.02 7.66 -2.39 -0.02 1.00 16 50 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 51 H 0.06 1.00 7.66 -2.39 -0.02 0.99 16 52 H 0.13 3.86 8.06 -2.91 -0.02 3.83 16 53 H 0.13 4.13 7.26 -2.91 -0.02 4.11 16 Total: -1.00 -70.80 415.67 7.02 -63.78 By element: Atomic # 1 Polarization: 32.38 SS G_CDS: 0.92 Total: 33.30 kcal Atomic # 6 Polarization: -13.07 SS G_CDS: 6.00 Total: -7.07 kcal Atomic # 7 Polarization: -66.15 SS G_CDS: -1.28 Total: -67.43 kcal Atomic # 8 Polarization: -66.50 SS G_CDS: -0.65 Total: -67.15 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.57 kcal Total: -70.80 7.02 -63.78 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008409667.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.662 kcal (2) G-P(sol) polarization free energy of solvation -70.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds