Wall clock time and date at job start Tue Mar 31 2020 05:33:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47136 * 2 1 4 4 C 1.53000 * 109.47136 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47267 * 180.02562 * 4 3 2 6 6 C 1.33352 * 117.94691 * 269.98361 * 5 4 3 7 7 O 1.21274 * 118.24633 * 2.21884 * 6 5 4 8 8 C 1.50179 * 123.50522 * 182.24387 * 6 5 4 9 9 C 1.53071 * 109.89336 * 342.41636 * 8 6 5 10 10 C 1.53266 * 108.24411 * 48.96688 * 9 8 6 11 11 H 1.09002 * 109.74751 * 52.05342 * 10 9 8 12 12 C 1.50704 * 109.41887 * 172.51150 * 10 9 8 13 13 O 1.21213 * 119.99769 * 119.12348 * 12 10 9 14 14 O 1.34306 * 119.99982 * 299.12358 * 12 10 9 15 15 C 1.34924 * 116.99739 * 180.02562 * 14 12 10 16 16 H 1.08002 * 120.00223 * 359.97438 * 15 14 12 17 17 C 1.38759 * 119.99627 * 180.02562 * 15 14 12 18 18 N 1.31436 * 120.00084 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99561 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.46831 * 90.00050 * 19 17 15 21 21 H 1.48499 * 109.46917 * 209.99621 * 19 17 15 22 22 H 1.48489 * 109.47348 * 329.99975 * 19 17 15 23 23 C 1.45753 * 117.94536 * 90.00322 * 5 4 3 24 24 H 1.09003 * 109.29793 * 281.01173 * 23 5 4 25 25 C 1.50696 * 109.30104 * 40.58829 * 23 5 4 26 26 C 1.38266 * 119.94521 * 220.41279 * 25 23 5 27 27 C 1.38149 * 120.05411 * 179.72456 * 26 25 23 28 28 C 1.38726 * 119.94477 * 0.28574 * 27 26 25 29 29 O 1.35899 * 120.05788 * 179.97438 * 28 27 26 30 30 C 1.42897 * 117.00302 * 179.97438 * 29 28 27 31 31 C 1.38729 * 119.89044 * 359.97438 * 28 27 26 32 32 C 1.38144 * 119.94142 * 0.02562 * 31 28 27 33 33 H 1.08999 * 109.46677 * 299.99848 * 1 2 3 34 34 H 1.09001 * 109.46985 * 59.99330 * 1 2 3 35 35 H 1.08996 * 109.46877 * 180.02562 * 1 2 3 36 36 H 1.09004 * 109.47365 * 240.00194 * 2 1 3 37 37 H 1.09003 * 109.47360 * 120.00284 * 2 1 3 38 38 H 1.08999 * 109.47214 * 60.00481 * 3 2 1 39 39 H 1.09003 * 109.47228 * 300.00365 * 3 2 1 40 40 H 1.09004 * 109.47365 * 60.00194 * 4 3 2 41 41 H 1.09003 * 109.47360 * 300.00284 * 4 3 2 42 42 H 1.09003 * 109.40231 * 102.54728 * 8 6 5 43 43 H 1.09000 * 109.39935 * 222.37079 * 8 6 5 44 44 H 1.08996 * 109.67126 * 168.63246 * 9 8 6 45 45 H 1.08993 * 109.67106 * 289.13302 * 9 8 6 46 46 H 0.97006 * 119.99730 * 180.02562 * 18 17 15 47 47 H 1.08002 * 119.97497 * 0.02562 * 26 25 23 48 48 H 1.08000 * 120.02723 * 180.30253 * 27 26 25 49 49 H 1.09002 * 109.47042 * 299.99130 * 30 29 28 50 50 H 1.08996 * 109.47358 * 59.99767 * 30 29 28 51 51 H 1.09009 * 109.47263 * 179.97438 * 30 29 28 52 52 H 1.08006 * 120.02919 * 180.02562 * 31 28 27 53 53 H 1.08007 * 119.97030 * 180.02562 * 32 31 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0584 2.8237 0.0013 6 6 4.2675 3.4132 -1.1765 7 8 4.0045 2.7917 -2.1841 8 6 4.8119 4.8053 -1.3217 9 6 4.6672 5.5618 0.0011 10 6 5.2120 4.6727 1.1244 11 1 6.2152 4.3309 0.8697 12 6 5.2531 5.4582 2.4098 13 8 4.6048 5.0906 3.3657 14 8 6.0082 6.5656 2.4962 15 6 6.0006 7.2216 3.6752 16 1 5.4045 6.8506 4.4959 17 6 6.7580 8.3735 3.8330 18 7 7.4830 8.8253 2.8342 19 14 6.7469 9.2822 5.4652 20 1 7.8271 8.7509 6.3347 21 1 6.9708 10.7307 5.2267 22 1 5.4343 9.0872 6.1314 23 6 4.2856 3.4673 1.2891 24 1 3.3318 3.7993 1.6992 25 6 4.9174 2.4790 2.2352 26 6 4.5185 2.4384 3.5585 27 6 5.0922 1.5294 4.4264 28 6 6.0734 0.6611 3.9707 29 8 6.6397 -0.2336 4.8226 30 6 7.6431 -1.0968 4.2841 31 6 6.4758 0.7075 2.6438 32 6 5.8990 1.6183 1.7799 33 1 -0.3633 0.5138 0.8900 34 1 -0.3633 0.5139 -0.8899 35 1 -0.3633 -1.0276 0.0005 36 1 1.8934 -0.5138 -0.8900 37 1 1.8934 -0.5139 0.8900 38 1 1.6768 1.9563 0.8900 39 1 1.6766 1.9564 -0.8900 40 1 3.9338 0.9286 -0.8891 41 1 3.9330 0.9288 0.8908 42 1 5.8654 4.7553 -1.5969 43 1 4.2589 5.3308 -2.1003 44 1 5.2374 6.4897 -0.0426 45 1 3.6160 5.7852 0.1829 46 1 8.0128 9.6304 2.9447 47 1 3.7544 3.1144 3.9127 48 1 4.7768 1.4947 5.4587 49 1 7.2157 -1.6914 3.4768 50 1 8.4678 -0.4983 3.8974 51 1 8.0114 -1.7590 5.0678 52 1 7.2392 0.0323 2.2866 53 1 6.2116 1.6546 0.7467 RHF calculation, no. of doubly occupied orbitals= 71 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000008409668.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:53 Heat of formation + Delta-G solvation = -150.032678 kcal Electronic energy + Delta-G solvation = -36300.320682 eV Core-core repulsion = 31715.766913 eV Total energy + Delta-G solvation = -4584.553769 eV No. of doubly occupied orbitals = 71 Molecular weight (most abundant/longest-lived isotopes) = 375.192 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -42.40230 -40.90869 -40.79302 -38.95366 -37.44917 -37.04577 -36.55367 -34.57396 -34.18194 -32.32470 -32.04522 -30.10253 -29.82155 -28.23144 -27.43496 -25.89797 -24.98027 -23.84489 -23.66653 -22.34362 -21.97937 -21.78424 -19.84669 -19.55499 -19.11496 -18.66300 -17.76622 -17.59464 -17.33860 -16.69235 -16.61976 -16.53318 -16.26050 -16.16938 -15.95048 -15.87301 -15.26715 -15.13468 -15.01373 -14.65967 -14.57565 -14.38351 -14.12677 -13.93956 -13.66124 -13.61331 -13.50705 -13.26669 -13.08871 -13.02718 -12.89843 -12.67577 -12.53027 -12.28934 -12.27547 -12.19747 -12.12785 -11.99523 -11.92697 -11.91848 -11.77825 -11.68167 -11.43313 -10.86443 -10.71922 -10.64853 -9.95191 -9.81695 -9.08806 -8.49532 -6.27049 0.32584 0.40077 1.32671 1.36003 1.51597 1.55137 1.67113 1.78410 2.16249 2.36426 2.67606 2.78170 3.01998 3.41111 3.47879 3.62528 3.78235 3.88364 3.93453 3.96643 3.97824 4.02482 4.12225 4.22169 4.29609 4.33613 4.39759 4.40129 4.43512 4.51319 4.63597 4.64159 4.72652 4.73701 4.74907 4.80020 4.80771 4.89309 4.92963 4.97564 5.03801 5.07478 5.09218 5.21132 5.23361 5.26692 5.31465 5.33156 5.38078 5.45958 5.68601 5.78241 5.88602 6.35909 6.43499 6.73224 6.97072 7.05992 7.82755 8.70753 Molecular weight = 375.19amu Principal moments of inertia in cm(-1) A = 0.007186 B = 0.003506 C = 0.002708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3895.284542 B = 7983.379872 C =10338.910629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.116 4.116 3 C -0.126 4.126 4 C 0.105 3.895 5 N -0.587 5.587 6 C 0.517 3.483 7 O -0.582 6.582 8 C -0.123 4.123 9 C -0.109 4.109 10 C -0.071 4.071 11 H 0.112 0.888 12 C 0.411 3.589 13 O -0.558 6.558 14 O -0.239 6.239 15 C -0.411 4.411 16 H 0.083 0.917 17 C -0.002 4.002 18 N -0.901 5.901 19 Si 1.008 2.992 20 H -0.264 1.264 21 H -0.264 1.264 22 H -0.263 1.263 23 C 0.222 3.778 24 H 0.083 0.917 25 C -0.144 4.144 26 C -0.041 4.041 27 C -0.172 4.172 28 C 0.126 3.874 29 O -0.335 6.335 30 C 0.018 3.982 31 C -0.211 4.211 32 C -0.064 4.064 33 H 0.052 0.948 34 H 0.050 0.950 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.058 0.942 39 H 0.051 0.949 40 H 0.080 0.920 41 H 0.090 0.910 42 H 0.119 0.881 43 H 0.122 0.878 44 H 0.087 0.913 45 H 0.076 0.924 46 H 0.276 0.724 47 H 0.127 0.873 48 H 0.132 0.868 49 H 0.069 0.931 50 H 0.060 0.940 51 H 0.119 0.881 52 H 0.153 0.847 53 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.326 -17.942 -3.914 18.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.154 4.154 3 C -0.165 4.165 4 C -0.017 4.017 5 N -0.318 5.318 6 C 0.307 3.693 7 O -0.463 6.463 8 C -0.163 4.163 9 C -0.147 4.147 10 C -0.090 4.090 11 H 0.130 0.870 12 C 0.257 3.743 13 O -0.455 6.455 14 O -0.147 6.147 15 C -0.487 4.487 16 H 0.101 0.899 17 C -0.202 4.202 18 N -0.539 5.539 19 Si 0.828 3.172 20 H -0.189 1.189 21 H -0.188 1.188 22 H -0.187 1.187 23 C 0.118 3.882 24 H 0.101 0.899 25 C -0.145 4.145 26 C -0.060 4.060 27 C -0.191 4.191 28 C 0.081 3.919 29 O -0.249 6.249 30 C -0.076 4.076 31 C -0.230 4.230 32 C -0.083 4.083 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.076 0.924 39 H 0.069 0.931 40 H 0.099 0.901 41 H 0.109 0.891 42 H 0.137 0.863 43 H 0.140 0.860 44 H 0.105 0.895 45 H 0.095 0.905 46 H 0.086 0.914 47 H 0.145 0.855 48 H 0.150 0.850 49 H 0.088 0.912 50 H 0.078 0.922 51 H 0.137 0.863 52 H 0.170 0.830 53 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -4.502 -18.188 -4.045 19.169 hybrid contribution 0.255 0.760 0.766 1.108 sum -4.247 -17.429 -3.280 18.236 Atomic orbital electron populations 1.21747 0.95172 1.02181 1.01648 1.21408 0.96486 0.95142 1.02408 1.21848 0.94904 0.98284 1.01464 1.21747 0.94613 0.81759 1.03580 1.47376 1.64396 1.15254 1.04725 1.20524 0.77031 0.89458 0.82238 1.90678 1.53738 1.65649 1.36277 1.21691 1.05019 0.90816 0.98736 1.21612 1.02522 0.98700 0.91831 1.21066 1.02266 0.94234 0.91472 0.87041 1.23551 0.79103 0.81340 0.90287 1.90508 1.44930 1.69398 1.40623 1.83871 1.58648 1.34760 1.37464 1.21346 1.30407 1.07834 0.89089 0.89887 1.26370 0.94383 0.96426 1.03059 1.70064 1.27531 1.23237 1.33069 0.84739 0.79422 0.77429 0.75586 1.18941 1.18776 1.18710 1.19296 0.97665 0.89405 0.81834 0.89946 1.19669 1.00564 0.99571 0.94665 1.20932 0.98349 0.94416 0.92283 1.20543 0.99500 0.97896 1.01134 1.19150 0.93120 0.90212 0.89433 1.86047 1.53802 1.47007 1.38026 1.23355 0.89395 0.92914 1.01985 1.21355 1.05055 1.04072 0.92499 1.20858 0.93847 0.93706 0.99839 0.92904 0.93083 0.91588 0.91616 0.91372 0.92364 0.93052 0.90127 0.89149 0.86295 0.86019 0.89482 0.90494 0.91444 0.85498 0.85049 0.91219 0.92164 0.86251 0.82953 0.85002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.45 9.91 71.98 0.71 -1.73 16 2 C -0.12 -2.09 5.93 30.60 0.18 -1.90 16 3 C -0.13 -2.81 5.53 30.60 0.17 -2.64 16 4 C 0.10 2.46 4.39 86.38 0.38 2.84 16 5 N -0.59 -15.39 2.20 -806.71 -1.77 -17.16 16 6 C 0.52 14.34 7.46 87.71 0.65 14.99 16 7 O -0.58 -19.08 16.21 -3.01 -0.05 -19.13 16 8 C -0.12 -2.94 6.02 29.71 0.18 -2.76 16 9 C -0.11 -3.16 5.30 30.71 0.16 -2.99 16 10 C -0.07 -2.36 2.12 -11.48 -0.02 -2.38 16 11 H 0.11 3.57 8.06 -2.39 -0.02 3.55 16 12 C 0.41 18.68 6.97 71.24 0.50 19.18 16 13 O -0.56 -26.72 11.94 20.77 0.25 -26.47 16 14 O -0.24 -13.12 9.56 14.88 0.14 -12.98 16 15 C -0.41 -23.69 9.65 67.94 0.66 -23.03 16 16 H 0.08 4.85 6.86 -2.91 -0.02 4.83 16 17 C 0.00 -0.11 5.49 84.88 0.47 0.35 16 18 N -0.90 -51.58 13.67 21.63 0.30 -51.28 16 19 Si 1.01 42.45 29.55 68.60 2.03 44.47 16 20 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 21 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 22 H -0.26 -10.79 7.11 99.48 0.71 -10.09 16 23 C 0.22 6.53 2.15 44.36 0.10 6.63 16 24 H 0.08 2.62 7.63 -2.39 -0.02 2.60 16 25 C -0.14 -4.23 3.30 -19.85 -0.07 -4.29 16 26 C -0.04 -1.32 8.11 22.26 0.18 -1.14 16 27 C -0.17 -5.15 9.99 22.37 0.22 -4.92 16 28 C 0.13 3.40 6.69 22.50 0.15 3.55 16 29 O -0.33 -8.14 10.50 -92.42 -0.97 -9.11 16 30 C 0.02 0.26 9.81 113.37 1.11 1.37 16 31 C -0.21 -5.02 9.04 22.36 0.20 -4.82 16 32 C -0.06 -1.65 7.47 22.25 0.17 -1.48 16 33 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 37 H 0.07 1.14 8.14 -2.39 -0.02 1.13 16 38 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.08 1.97 7.21 -2.38 -0.02 1.96 16 41 H 0.09 2.04 5.29 -2.39 -0.01 2.02 16 42 H 0.12 2.51 8.14 -2.39 -0.02 2.49 16 43 H 0.12 2.53 8.14 -2.39 -0.02 2.51 16 44 H 0.09 2.79 7.98 -2.39 -0.02 2.77 16 45 H 0.08 2.19 8.13 -2.39 -0.02 2.17 16 46 H 0.28 14.46 8.31 -92.70 -0.77 13.69 16 47 H 0.13 4.39 6.79 -2.91 -0.02 4.37 16 48 H 0.13 3.70 8.06 -2.91 -0.02 3.67 16 49 H 0.07 0.81 7.66 -2.39 -0.02 0.79 16 50 H 0.06 0.83 7.66 -2.39 -0.02 0.81 16 51 H 0.12 1.20 8.14 -2.38 -0.02 1.18 16 52 H 0.15 2.69 6.30 -2.91 -0.02 2.67 16 53 H 0.13 3.06 7.58 -2.91 -0.02 3.04 16 Total: -1.00 -70.97 425.20 6.93 -64.04 By element: Atomic # 1 Polarization: 31.91 SS G_CDS: 0.91 Total: 32.82 kcal Atomic # 6 Polarization: -11.29 SS G_CDS: 6.10 Total: -5.19 kcal Atomic # 7 Polarization: -66.97 SS G_CDS: -1.48 Total: -68.45 kcal Atomic # 8 Polarization: -67.07 SS G_CDS: -0.63 Total: -67.70 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.47 kcal Total: -70.97 6.93 -64.04 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008409668.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.990 kcal (2) G-P(sol) polarization free energy of solvation -70.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds