Wall clock time and date at job start Tue Mar 31 2020 05:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30836 * 125.90309 * 2 1 4 4 N 1.40080 * 108.20867 * 179.81600 * 3 2 1 5 5 C 1.46508 * 126.03855 * 180.23079 * 4 3 2 6 6 C 1.50697 * 109.47006 * 270.15508 * 5 4 3 7 7 H 1.08000 * 120.00487 * 359.97438 * 6 5 4 8 8 C 1.37881 * 119.99681 * 179.97438 * 6 5 4 9 9 N 1.31513 * 119.99863 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 119.99959 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47336 * 0.02562 * 10 8 6 12 12 H 1.48502 * 109.47111 * 119.99886 * 10 8 6 13 13 H 1.48492 * 109.47429 * 240.00016 * 10 8 6 14 14 C 1.34946 * 107.92639 * 0.36494 * 4 3 2 15 15 C 1.50703 * 126.12821 * 179.90663 * 14 4 3 16 16 C 1.35310 * 107.74594 * 359.64128 * 14 4 3 17 17 C 1.50701 * 126.04421 * 180.20870 * 16 14 4 18 18 H 1.09007 * 110.34290 * 359.30028 * 17 16 14 19 19 C 1.51102 * 110.38916 * 237.01212 * 17 16 14 20 20 C 1.30717 * 110.98985 * 224.83680 * 19 17 16 21 21 C 1.51110 * 111.14120 * 359.84120 * 20 19 17 22 22 H 1.08995 * 110.38606 * 135.34907 * 21 20 19 23 23 N 1.46494 * 110.48214 * 257.67828 * 21 20 19 24 24 C 1.34781 * 120.00129 * 270.35399 * 23 21 20 25 25 O 1.21289 * 119.99626 * 0.02562 * 24 23 21 26 26 C 1.50691 * 120.00276 * 179.97438 * 24 23 21 27 27 C 1.53001 * 109.47196 * 180.02562 * 26 24 23 28 28 C 1.53001 * 109.47376 * 180.02562 * 27 26 24 29 29 C 1.50694 * 109.47405 * 180.02562 * 28 27 26 30 30 O 1.20828 * 119.99847 * 359.97438 * 29 28 27 31 31 O 1.34226 * 120.00366 * 180.02562 * 29 28 27 32 32 C 1.54630 * 104.72178 * 16.53605 * 21 20 19 33 33 H 1.09003 * 109.46956 * 269.95831 * 1 2 3 34 34 H 1.08999 * 109.47037 * 29.95728 * 1 2 3 35 35 H 1.09003 * 109.47071 * 149.95864 * 1 2 3 36 36 H 1.08995 * 109.46473 * 30.15511 * 5 4 3 37 37 H 1.09002 * 109.46903 * 150.15480 * 5 4 3 38 38 H 0.96999 * 119.99922 * 179.97438 * 9 8 6 39 39 H 1.09002 * 109.47152 * 269.68605 * 15 14 4 40 40 H 1.09001 * 109.46980 * 149.68706 * 15 14 4 41 41 H 1.09004 * 109.47113 * 29.68687 * 15 14 4 42 42 H 1.07999 * 124.44509 * 44.73012 * 19 17 16 43 43 H 1.08005 * 124.41415 * 179.91668 * 20 19 17 44 44 H 0.97000 * 120.00097 * 90.35996 * 23 21 20 45 45 H 1.08999 * 109.47351 * 300.00275 * 26 24 23 46 46 H 1.09002 * 109.46931 * 60.00710 * 26 24 23 47 47 H 1.08999 * 109.47185 * 300.00364 * 27 26 24 48 48 H 1.08994 * 109.47209 * 60.00504 * 27 26 24 49 49 H 1.08999 * 109.47125 * 300.00234 * 28 27 26 50 50 H 1.09002 * 109.47247 * 59.99824 * 28 27 26 51 51 H 0.96700 * 117.00576 * 180.02562 * 31 29 28 52 52 H 1.09000 * 111.03704 * 217.33905 * 32 21 20 53 53 H 1.09000 * 111.03755 * 93.39709 * 32 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6087 0.6340 0.0043 5 6 4.7899 1.5007 0.0105 6 6 5.1981 1.8037 -1.4082 7 1 4.6344 1.3916 -2.2321 8 6 6.2913 2.6071 -1.6543 9 7 6.9781 3.1085 -0.6511 10 14 6.7977 2.9822 -3.4128 11 1 5.8689 2.3024 -4.3511 12 1 6.7454 4.4486 -3.6409 13 1 8.1809 2.4942 -3.6444 14 6 3.6142 -0.7154 -0.0013 15 6 4.8350 -1.5990 -0.0015 16 6 2.3272 -1.1331 -0.0009 17 6 1.8599 -2.5658 -0.0016 18 1 2.7140 -3.2430 -0.0150 19 6 0.9628 -2.8263 -1.1892 20 6 -0.0965 -3.5059 -0.8358 21 6 -0.0782 -3.8133 0.6436 22 1 -1.0579 -3.6253 1.0826 23 7 0.3247 -5.2029 0.8734 24 6 -0.6065 -6.1763 0.9166 25 8 -1.7782 -5.9017 0.7647 26 6 -0.1921 -7.6058 1.1524 27 6 -1.4318 -8.5025 1.1546 28 6 -1.0111 -9.9538 1.3946 29 6 -2.2320 -10.8371 1.3962 30 8 -3.3265 -10.3552 1.2235 31 8 -2.1038 -12.1590 1.5904 32 6 0.9718 -2.8435 1.2335 33 1 -0.3633 -0.0007 1.0277 34 1 -0.3633 0.8904 -0.5132 35 1 -0.3633 -0.8896 -0.5145 36 1 4.5552 2.4310 0.5276 37 1 5.6082 0.9959 0.5241 38 1 7.7474 3.6733 -0.8242 39 1 5.1291 -1.8123 -1.0292 40 1 4.6077 -2.5329 0.5126 41 1 5.6513 -1.0909 0.5120 42 1 1.1694 -2.4932 -2.1956 43 1 -0.8813 -3.8089 -1.5131 44 1 1.2618 -5.4225 0.9945 45 1 0.4843 -7.9236 0.3589 46 1 0.3144 -7.6832 2.1144 47 1 -2.1086 -8.1848 1.9478 48 1 -1.9379 -8.4250 0.1924 49 1 -0.3341 -10.2717 0.6017 50 1 -0.5051 -10.0310 2.3570 51 1 -2.9154 -12.6847 1.5826 52 1 1.5446 -3.3227 2.0275 53 1 0.5012 -1.9275 1.5909 RHF calculation, no. of doubly occupied orbitals= 71 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000008636088.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:42 Heat of formation + Delta-G solvation = -85.345853 kcal Electronic energy + Delta-G solvation = -33211.464943 eV Core-core repulsion = 28662.008956 eV Total energy + Delta-G solvation = -4549.455986 eV No. of doubly occupied orbitals = 71 Molecular weight (most abundant/longest-lived isotopes) = 375.199 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -42.27317 -41.25486 -40.87626 -39.18184 -37.15074 -35.90499 -35.28919 -34.75699 -34.15466 -32.85554 -30.64334 -30.25105 -29.83212 -28.60652 -27.60552 -26.59657 -24.67424 -24.24490 -22.00619 -21.73402 -21.18898 -20.40105 -20.22738 -19.51343 -18.99605 -18.79867 -18.21878 -17.41438 -17.32525 -17.29221 -16.93072 -16.45915 -16.29171 -15.98173 -15.83129 -15.41185 -14.84531 -14.66578 -14.60655 -14.49338 -14.09451 -13.98762 -13.74539 -13.56587 -13.38606 -13.32616 -13.26206 -13.07003 -12.92026 -12.88826 -12.76098 -12.66828 -12.56989 -12.49119 -12.45850 -12.41058 -12.34334 -12.18718 -11.80487 -11.70004 -11.66492 -11.61132 -11.24146 -10.86378 -10.75525 -9.99588 -9.90504 -9.79153 -8.96509 -8.34729 -6.52636 1.18379 1.27965 1.29191 1.34274 1.37147 1.48825 1.80060 1.95981 1.97322 2.16188 2.33020 2.58889 2.94703 3.67755 3.76270 3.85127 3.86692 3.96365 4.07162 4.09326 4.20367 4.30227 4.33434 4.46757 4.54623 4.60148 4.63608 4.66826 4.68666 4.71278 4.77622 4.78440 4.82354 4.83552 4.91229 4.91751 4.95795 5.04115 5.14537 5.17492 5.20368 5.29219 5.37437 5.43783 5.51313 5.56938 5.62921 5.67010 5.70087 5.80622 5.93701 6.08402 6.34674 6.63825 6.72694 7.04008 7.15157 7.19098 7.43516 8.71275 Molecular weight = 375.20amu Principal moments of inertia in cm(-1) A = 0.020659 B = 0.001408 C = 0.001370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.048833 B =19877.813111 C =20425.626076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.058 3.942 3 N -0.355 5.355 4 N -0.356 5.356 5 C 0.275 3.725 6 C -0.551 4.551 7 H 0.048 0.952 8 C 0.023 3.977 9 N -0.919 5.919 10 Si 0.971 3.029 11 H -0.274 1.274 12 H -0.276 1.276 13 H -0.265 1.265 14 C 0.077 3.923 15 C -0.083 4.083 16 C -0.245 4.245 17 C 0.023 3.977 18 H 0.106 0.894 19 C -0.122 4.122 20 C -0.184 4.184 21 C 0.172 3.828 22 H 0.076 0.924 23 N -0.706 5.706 24 C 0.505 3.495 25 O -0.592 6.592 26 C -0.130 4.130 27 C -0.094 4.094 28 C -0.107 4.107 29 C 0.476 3.524 30 O -0.564 6.564 31 O -0.515 6.515 32 C -0.114 4.114 33 H 0.084 0.916 34 H 0.059 0.941 35 H 0.091 0.909 36 H 0.015 0.985 37 H 0.048 0.952 38 H 0.273 0.727 39 H 0.078 0.922 40 H 0.115 0.885 41 H 0.058 0.942 42 H 0.115 0.885 43 H 0.117 0.883 44 H 0.417 0.583 45 H 0.128 0.872 46 H 0.131 0.869 47 H 0.051 0.949 48 H 0.049 0.951 49 H 0.137 0.863 50 H 0.138 0.862 51 H 0.424 0.576 52 H 0.100 0.900 53 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.601 -30.302 5.810 32.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.106 4.106 3 N -0.179 5.179 4 N -0.136 5.136 5 C 0.156 3.844 6 C -0.589 4.589 7 H 0.066 0.934 8 C -0.178 4.178 9 N -0.557 5.557 10 Si 0.794 3.206 11 H -0.198 1.198 12 H -0.202 1.202 13 H -0.190 1.190 14 C -0.053 4.053 15 C -0.141 4.141 16 C -0.256 4.256 17 C 0.004 3.996 18 H 0.124 0.876 19 C -0.141 4.141 20 C -0.203 4.203 21 C 0.067 3.933 22 H 0.094 0.906 23 N -0.358 5.358 24 C 0.293 3.707 25 O -0.472 6.472 26 C -0.169 4.169 27 C -0.132 4.132 28 C -0.143 4.143 29 C 0.320 3.680 30 O -0.456 6.456 31 O -0.329 6.329 32 C -0.152 4.152 33 H 0.103 0.897 34 H 0.078 0.922 35 H 0.110 0.890 36 H 0.033 0.967 37 H 0.066 0.934 38 H 0.082 0.918 39 H 0.097 0.903 40 H 0.134 0.866 41 H 0.077 0.923 42 H 0.133 0.867 43 H 0.135 0.865 44 H 0.255 0.745 45 H 0.146 0.854 46 H 0.149 0.851 47 H 0.070 0.930 48 H 0.068 0.932 49 H 0.155 0.845 50 H 0.156 0.844 51 H 0.286 0.714 52 H 0.118 0.882 53 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -10.018 -28.245 5.753 30.516 hybrid contribution -0.065 0.059 -1.016 1.020 sum -10.083 -28.186 4.736 30.308 Atomic orbital electron populations 1.20267 0.85527 1.03318 1.03288 1.22598 0.97624 0.90454 0.99973 1.77217 0.87987 1.25212 1.27480 1.48975 1.05145 1.05324 1.54192 1.19109 0.79095 0.88691 0.97504 1.21457 1.13317 1.32320 0.91821 0.93416 1.25732 0.95481 0.94477 1.02133 1.70009 1.19477 1.33389 1.32842 0.85321 0.78474 0.78144 0.78616 1.19836 1.20175 1.18957 1.21558 0.98355 0.84616 1.00747 1.20481 0.91915 0.98103 1.03599 1.19582 0.89901 0.96143 1.20023 1.19283 0.97708 0.89898 0.92720 0.87609 1.23351 0.95387 0.96625 0.98758 1.23457 0.98463 1.01030 0.97322 1.20472 0.98763 0.81525 0.92539 0.90626 1.45987 1.11091 1.06214 1.72531 1.21415 0.85268 0.89085 0.74911 1.90726 1.20392 1.84623 1.51506 1.21684 0.99290 0.88470 1.07454 1.21061 0.97193 0.92490 1.02484 1.21472 0.93230 0.91054 1.08587 1.24166 0.91669 0.81688 0.70427 1.90766 1.31229 1.76108 1.47464 1.84506 1.44366 1.20377 1.83613 1.22804 0.96164 0.98986 0.97284 0.89699 0.92154 0.89039 0.96669 0.93437 0.91761 0.90315 0.86649 0.92310 0.86675 0.86529 0.74543 0.85376 0.85100 0.93006 0.93168 0.84507 0.84370 0.71433 0.88190 0.90307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.82 9.01 71.23 0.64 -1.18 16 2 C 0.06 2.13 6.86 43.10 0.30 2.42 16 3 N -0.36 -16.57 12.58 -47.38 -0.60 -17.17 16 4 N -0.36 -16.72 3.60 -338.40 -1.22 -17.94 16 5 C 0.28 14.58 6.00 85.63 0.51 15.10 16 6 C -0.55 -30.95 9.39 25.60 0.24 -30.71 16 7 H 0.05 2.78 7.81 -2.91 -0.02 2.75 16 8 C 0.02 1.24 5.46 84.66 0.46 1.70 16 9 N -0.92 -52.00 13.29 21.45 0.28 -51.71 16 10 Si 0.97 43.01 29.54 68.60 2.03 45.04 16 11 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 12 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 13 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 14 C 0.08 2.85 6.93 41.40 0.29 3.14 16 15 C -0.08 -2.37 9.76 71.24 0.70 -1.67 16 16 C -0.24 -7.77 4.89 -20.14 -0.10 -7.87 16 17 C 0.02 0.48 3.11 -11.60 -0.04 0.45 16 18 H 0.11 1.76 6.88 -2.38 -0.02 1.74 16 19 C -0.12 -2.57 8.36 26.06 0.22 -2.36 16 20 C -0.18 -3.62 9.89 26.07 0.26 -3.36 16 21 C 0.17 3.02 3.24 44.93 0.15 3.17 16 22 H 0.08 1.65 7.56 -2.39 -0.02 1.63 16 23 N -0.71 -8.86 5.09 -442.84 -2.26 -11.12 16 24 C 0.50 8.09 7.83 87.65 0.69 8.77 16 25 O -0.59 -16.10 15.63 -3.06 -0.05 -16.15 16 26 C -0.13 -0.79 5.70 29.85 0.17 -0.62 16 27 C -0.09 -1.10 3.79 30.59 0.12 -0.99 16 28 C -0.11 -0.52 5.81 29.85 0.17 -0.35 16 29 C 0.48 5.77 8.33 71.23 0.59 6.37 16 30 O -0.56 -12.55 16.74 21.96 0.37 -12.18 16 31 O -0.52 -3.69 13.42 -51.38 -0.69 -4.38 16 32 C -0.11 -1.98 6.09 31.71 0.19 -1.78 16 33 H 0.08 2.04 7.73 -2.39 -0.02 2.02 16 34 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.09 2.20 5.81 -2.39 -0.01 2.19 16 36 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.05 2.49 7.04 -2.39 -0.02 2.47 16 38 H 0.27 14.38 8.31 -92.71 -0.77 13.60 16 39 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 40 H 0.12 2.18 7.18 -2.39 -0.02 2.17 16 41 H 0.06 1.84 7.07 -2.38 -0.02 1.82 16 42 H 0.12 2.66 8.06 -2.91 -0.02 2.64 16 43 H 0.12 2.45 8.06 -2.91 -0.02 2.42 16 44 H 0.42 2.41 8.62 -92.71 -0.80 1.61 16 45 H 0.13 0.06 8.14 -2.39 -0.02 0.04 16 46 H 0.13 -0.03 8.14 -2.39 -0.02 -0.05 16 47 H 0.05 0.90 8.06 -2.39 -0.02 0.88 16 48 H 0.05 0.89 8.06 -2.39 -0.02 0.87 16 49 H 0.14 -0.06 8.14 -2.39 -0.02 -0.08 16 50 H 0.14 -0.10 8.14 -2.39 -0.02 -0.12 16 51 H 0.42 0.24 9.10 -74.06 -0.67 -0.43 16 52 H 0.10 1.29 8.06 -2.39 -0.02 1.27 16 53 H 0.08 1.60 6.13 -2.39 -0.01 1.59 16 Total: -1.00 -85.51 438.18 2.91 -82.60 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -0.52 Total: 12.78 kcal Atomic # 6 Polarization: -15.32 SS G_CDS: 5.55 Total: -9.77 kcal Atomic # 7 Polarization: -94.15 SS G_CDS: -3.78 Total: -97.94 kcal Atomic # 8 Polarization: -32.34 SS G_CDS: -0.37 Total: -32.71 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Total: -85.51 2.91 -82.60 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008636088.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.748 kcal (2) G-P(sol) polarization free energy of solvation -85.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds