Wall clock time and date at job start Tue Mar 31 2020 06:35:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.77877 * 2 1 4 4 C 1.53659 * 109.78345 * 239.34280 * 2 1 3 5 5 C 1.52950 * 109.32814 * 295.18863 * 4 2 1 6 6 C 1.52957 * 109.81711 * 296.27378 * 5 4 2 7 7 C 1.53228 * 109.40482 * 63.59409 * 6 5 4 8 8 H 1.09003 * 109.62622 * 65.09120 * 7 6 5 9 9 C 1.53004 * 109.62737 * 185.65784 * 7 6 5 10 10 C 1.50701 * 109.47120 * 184.04507 * 9 7 6 11 11 H 1.08000 * 120.00214 * 0.02562 * 10 9 7 12 12 C 1.37875 * 119.99778 * 179.97438 * 10 9 7 13 13 N 1.31522 * 120.00075 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 119.99879 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.47021 * 60.00750 * 14 12 10 16 16 H 1.48504 * 109.47213 * 180.02562 * 14 12 10 17 17 H 1.48494 * 109.47289 * 300.00391 * 14 12 10 18 18 C 1.51262 * 108.53716 * 305.37515 * 7 6 5 19 19 N 1.28018 * 120.84899 * 231.32308 * 18 7 6 20 20 N 1.40109 * 120.00226 * 175.05993 * 19 18 7 21 21 C 1.39597 * 120.00163 * 185.22371 * 20 19 18 22 22 C 1.38988 * 120.07807 * 5.54000 * 21 20 19 23 23 C 1.38066 * 119.91531 * 179.97438 * 22 21 20 24 24 C 1.38323 * 120.08200 * 359.74272 * 23 22 21 25 25 N 1.48032 * 119.91940 * 180.28148 * 24 23 22 26 26 O 1.21800 * 119.99424 * 180.23529 * 25 24 23 27 27 O 1.21792 * 119.99950 * 0.22839 * 25 24 23 28 28 C 1.38278 * 120.15833 * 0.50795 * 24 23 22 29 29 C 1.38107 * 120.08050 * 359.49847 * 28 24 23 30 30 N 1.48026 * 120.04202 * 180.23114 * 29 28 24 31 31 O 1.21802 * 119.99599 * 354.20048 * 30 29 28 32 32 O 1.21800 * 120.00063 * 174.20638 * 30 29 28 33 33 H 1.09000 * 109.47141 * 299.52341 * 1 2 3 34 34 H 1.08997 * 109.47453 * 59.51659 * 1 2 3 35 35 H 1.08995 * 109.47199 * 179.52376 * 1 2 3 36 36 H 1.09006 * 109.62984 * 175.16516 * 4 2 1 37 37 H 1.09004 * 109.42737 * 55.08514 * 4 2 1 38 38 H 1.09000 * 109.41965 * 176.16390 * 5 4 2 39 39 H 1.09001 * 109.41375 * 56.37740 * 5 4 2 40 40 H 1.08997 * 109.48593 * 303.61614 * 6 5 4 41 41 H 1.09005 * 109.48598 * 183.57589 * 6 5 4 42 42 H 1.08998 * 109.46998 * 304.04958 * 9 7 6 43 43 H 1.08997 * 109.46794 * 64.04225 * 9 7 6 44 44 H 0.96999 * 119.99609 * 179.97438 * 13 12 10 45 45 H 0.97004 * 119.99419 * 5.22542 * 20 19 18 46 46 H 1.07997 * 120.04261 * 359.95478 * 22 21 20 47 47 H 1.08004 * 119.96144 * 180.02562 * 23 22 21 48 48 H 1.07997 * 119.95806 * 179.76407 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8988 1.0257 0.0000 4 6 2.0501 -0.7373 -1.2438 5 6 1.6434 -2.2097 -1.1665 6 6 2.3164 -2.8710 0.0374 7 6 1.8114 -2.2150 1.3268 8 1 0.7470 -2.4164 1.4475 9 6 2.5830 -2.7737 2.5241 10 6 2.0173 -2.2010 3.7980 11 1 1.1898 -1.5081 3.7578 12 6 2.5553 -2.5624 5.0149 13 7 3.5627 -3.4065 5.0639 14 14 1.8545 -1.8519 6.5940 15 1 0.4216 -2.2237 6.7108 16 1 2.6034 -2.3943 7.7560 17 1 1.9818 -0.3726 6.5705 18 6 2.0381 -0.7227 1.2279 19 7 2.6399 -0.0868 2.1618 20 7 2.9324 1.2746 2.0067 21 6 3.6835 1.9421 2.9757 22 6 4.2392 1.2350 4.0354 23 6 4.9820 1.8984 4.9917 24 6 5.1778 3.2641 4.8931 25 7 5.9801 3.9708 5.9171 26 8 6.1498 5.1740 5.8339 27 8 6.4702 3.3490 6.8425 28 6 4.6221 3.9716 3.8430 29 6 3.8779 3.3147 2.8828 30 7 3.2877 4.0722 1.7563 31 8 3.3679 5.2873 1.7311 32 8 2.7218 3.4803 0.8546 33 1 -0.3633 0.5064 0.8942 34 1 -0.3634 0.5213 -0.8856 35 1 -0.3633 -1.0276 -0.0085 36 1 3.1367 -0.6620 -1.2865 37 1 1.6191 -0.2876 -2.1384 38 1 1.9520 -2.7193 -2.0792 39 1 0.5609 -2.2815 -1.0611 40 1 3.3966 -2.7453 -0.0354 41 1 2.0740 -3.9337 0.0512 42 1 2.4904 -3.8596 2.5412 43 1 3.6346 -2.5002 2.4382 44 1 3.9414 -3.6605 5.9200 45 1 2.6128 1.7534 1.2259 46 1 4.0899 0.1680 4.1110 47 1 5.4145 1.3496 5.8153 48 1 4.7739 5.0384 3.7713 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000008652101.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:29 Heat of formation + Delta-G solvation = 56.193210 kcal Electronic energy + Delta-G solvation = -35827.974955 eV Core-core repulsion = 31083.397557 eV Total energy + Delta-G solvation = -4744.577398 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 376.163 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -42.66696 -42.16215 -40.06255 -39.37218 -37.19607 -36.61282 -36.20123 -34.12280 -33.27931 -32.30938 -32.11815 -30.55603 -29.02789 -27.02417 -26.91274 -25.95305 -25.17917 -23.44585 -22.91025 -22.64770 -21.39664 -20.48586 -20.21539 -19.25045 -18.78421 -18.43482 -18.07170 -17.92527 -17.76959 -17.56333 -16.54450 -16.31118 -15.45551 -15.07395 -14.80359 -14.54332 -14.46806 -14.30341 -13.83718 -13.61569 -13.29212 -13.00730 -12.59246 -12.56305 -12.44149 -12.39860 -11.92853 -11.86540 -11.63091 -11.62083 -11.52763 -11.51426 -11.26885 -11.23589 -11.18916 -11.15389 -10.96287 -10.72021 -10.62168 -10.56000 -10.23012 -10.18586 -10.03465 -9.77204 -9.20664 -9.06974 -8.45338 -8.08138 -6.08929 -4.07290 -0.43361 -0.27416 0.88282 0.96797 1.17358 1.40368 2.24198 2.40904 2.95144 3.21128 3.29311 3.31328 3.80535 4.13321 4.19064 4.28746 4.35521 4.47443 4.53903 4.65021 4.84030 4.96295 5.07592 5.17474 5.27297 5.30328 5.35223 5.38596 5.51974 5.54768 5.65797 5.67282 5.73604 5.86993 5.89147 5.94097 6.01396 6.12903 6.16680 6.20761 6.26505 6.35169 6.44152 6.60720 6.61826 6.76678 7.32890 7.49830 7.58799 7.60234 7.87219 8.24308 8.29409 8.93671 9.53146 11.02253 Molecular weight = 376.16amu Principal moments of inertia in cm(-1) A = 0.007243 B = 0.004141 C = 0.002862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3864.639450 B = 6760.085477 C = 9780.456444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.102 4.102 3 H 0.072 0.928 4 C -0.105 4.105 5 C -0.124 4.124 6 C -0.112 4.112 7 C -0.028 4.028 8 H 0.087 0.913 9 C 0.031 3.969 10 C -0.491 4.491 11 H 0.050 0.950 12 C 0.061 3.939 13 N -0.895 5.895 14 Si 0.876 3.124 15 H -0.279 1.279 16 H -0.286 1.286 17 H -0.279 1.279 18 C 0.147 3.853 19 N -0.214 5.214 20 N -0.558 5.558 21 C 0.345 3.655 22 C -0.147 4.147 23 C 0.016 3.984 24 C -0.104 4.104 25 N 0.043 4.957 26 O -0.169 6.169 27 O -0.157 6.157 28 C 0.052 3.948 29 C -0.137 4.137 30 N 0.056 4.944 31 O -0.139 6.139 32 O -0.204 6.204 33 H 0.054 0.946 34 H 0.062 0.938 35 H 0.070 0.930 36 H 0.062 0.938 37 H 0.067 0.933 38 H 0.062 0.938 39 H 0.068 0.932 40 H 0.062 0.938 41 H 0.073 0.927 42 H 0.023 0.977 43 H 0.023 0.977 44 H 0.260 0.740 45 H 0.404 0.596 46 H 0.195 0.805 47 H 0.170 0.830 48 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.306 7.328 -10.288 12.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.124 4.124 3 H 0.090 0.910 4 C -0.144 4.144 5 C -0.162 4.162 6 C -0.150 4.150 7 C -0.049 4.049 8 H 0.105 0.895 9 C -0.006 4.006 10 C -0.530 4.530 11 H 0.069 0.931 12 C -0.140 4.140 13 N -0.535 5.535 14 Si 0.704 3.296 15 H -0.205 1.205 16 H -0.212 1.212 17 H -0.205 1.205 18 C -0.045 4.045 19 N -0.016 5.016 20 N -0.281 5.281 21 C 0.226 3.774 22 C -0.169 4.169 23 C -0.005 4.005 24 C -0.191 4.191 25 N 0.560 4.440 26 O -0.382 6.382 27 O -0.373 6.373 28 C 0.032 3.968 29 C -0.229 4.229 30 N 0.568 4.432 31 O -0.361 6.361 32 O -0.400 6.400 33 H 0.073 0.927 34 H 0.081 0.919 35 H 0.089 0.911 36 H 0.081 0.919 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.081 0.919 41 H 0.092 0.908 42 H 0.041 0.959 43 H 0.041 0.959 44 H 0.070 0.930 45 H 0.258 0.742 46 H 0.212 0.788 47 H 0.187 0.813 48 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -1.013 6.388 -9.397 11.408 hybrid contribution -0.806 1.354 0.005 1.576 sum -1.819 7.742 -9.392 12.307 Atomic orbital electron populations 1.21759 0.92901 1.03094 1.01957 1.21069 0.97695 0.98836 0.94811 0.90953 1.21614 1.00817 0.95907 0.96021 1.21625 1.01148 0.94789 0.98622 1.21688 1.00470 0.99818 0.93067 1.20575 1.01918 0.85048 0.97353 0.89526 1.19120 0.95347 0.96110 0.89989 1.20945 1.16173 1.25290 0.90565 0.93144 1.24860 0.95195 0.95404 0.98525 1.69926 1.24361 1.33750 1.25431 0.86926 0.79424 0.79420 0.83820 1.20454 1.21186 1.20456 1.25683 0.91778 0.97892 0.89180 1.75320 1.16416 0.87376 1.22477 1.47543 1.49305 1.09226 1.22002 1.17565 0.85072 0.86546 0.88201 1.21358 0.99287 1.03962 0.92335 1.21235 0.91025 0.90563 0.97674 1.20493 1.09682 0.93293 0.95674 1.43254 0.99055 1.00914 1.00745 1.94537 1.64809 0.96840 1.82044 1.94563 1.50127 1.68102 1.24511 1.20229 0.86988 1.02382 0.87233 1.20098 1.16399 0.89978 0.96440 1.43164 0.98247 1.01218 1.00614 1.94553 1.62585 0.95267 1.83649 1.94180 1.45387 1.69906 1.30512 0.92694 0.91887 0.91088 0.91874 0.91396 0.91908 0.91382 0.91873 0.90827 0.95857 0.95862 0.92969 0.74153 0.78837 0.81297 0.80505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 8.91 37.16 0.33 -1.18 16 2 C -0.10 -1.25 2.95 -91.15 -0.27 -1.52 16 3 H 0.07 0.91 5.57 -51.93 -0.29 0.62 16 4 C -0.11 -1.10 5.44 -26.41 -0.14 -1.24 16 5 C -0.12 -1.27 5.65 -26.78 -0.15 -1.42 16 6 C -0.11 -1.46 5.23 -26.64 -0.14 -1.60 16 7 C -0.03 -0.46 2.15 -91.38 -0.20 -0.66 16 8 H 0.09 1.39 7.80 -51.93 -0.41 0.98 16 9 C 0.03 0.68 4.13 -27.88 -0.12 0.56 16 10 C -0.49 -11.83 7.51 -34.44 -0.26 -12.09 16 11 H 0.05 1.23 7.46 -52.49 -0.39 0.84 16 12 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 13 N -0.89 -24.13 13.29 55.43 0.74 -23.40 16 14 Si 0.88 20.08 29.54 -169.99 -5.02 15.06 16 15 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 16 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 17 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 18 C 0.15 2.31 5.48 -78.36 -0.43 1.88 16 19 N -0.21 -3.78 7.85 35.87 0.28 -3.50 16 20 N -0.56 -8.80 6.22 32.42 0.20 -8.60 16 21 C 0.35 5.24 6.70 -83.78 -0.56 4.68 16 22 C -0.15 -2.26 9.51 -39.37 -0.37 -2.64 16 23 C 0.02 0.22 9.55 -39.61 -0.38 -0.15 16 24 C -0.10 -1.42 6.85 -79.89 -0.55 -1.96 16 25 N 0.04 0.63 4.45 33.99 0.15 0.78 16 26 O -0.17 -2.52 18.44 -29.46 -0.54 -3.06 16 27 O -0.16 -2.44 18.44 -29.46 -0.54 -2.98 16 28 C 0.05 0.66 9.06 -39.61 -0.36 0.31 16 29 C -0.14 -1.91 6.86 -79.73 -0.55 -2.45 16 30 N 0.06 0.81 4.45 34.07 0.15 0.96 16 31 O -0.14 -1.97 18.46 -29.46 -0.54 -2.52 16 32 O -0.20 -3.01 15.71 -29.46 -0.46 -3.47 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.73 5.95 -51.93 -0.31 0.42 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.07 0.65 6.39 -51.93 -0.33 0.32 16 40 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.02 0.55 8.08 -51.93 -0.42 0.13 16 44 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 45 H 0.40 5.91 2.59 -182.95 -0.47 5.43 16 46 H 0.19 3.47 7.37 -52.49 -0.39 3.08 16 47 H 0.17 2.10 7.60 -52.48 -0.40 1.70 16 48 H 0.18 1.95 7.17 -52.49 -0.38 1.57 16 LS Contribution 399.05 15.07 6.01 6.01 Total: -1.00 -27.21 399.05 -10.11 -37.33 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: -6.30 Total: 5.41 kcal Atomic # 6 Polarization: -13.80 SS G_CDS: -4.24 Total: -18.03 kcal Atomic # 7 Polarization: -35.27 SS G_CDS: 1.52 Total: -33.75 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: -2.09 Total: -12.03 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -27.21 -10.11 -37.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008652101.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.519 kcal (2) G-P(sol) polarization free energy of solvation -27.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.326 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds