Wall clock time and date at job start Tue Mar 31 2020 05:33:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46801 * 2 1 4 4 C 1.53005 * 109.46801 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.46801 * 180.02562 * 4 3 2 6 6 C 1.53005 * 109.46801 * 179.97438 * 5 4 3 7 7 N 1.46498 * 109.46848 * 179.97438 * 6 5 4 8 8 C 1.38535 * 126.38415 * 89.99957 * 7 6 5 9 9 C 1.38652 * 133.88291 * 359.95941 * 8 7 6 10 10 C 1.37966 * 119.85591 * 180.02562 * 9 8 7 11 11 C 1.38698 * 120.43418 * 359.97438 * 10 9 8 12 12 C 1.37695 * 120.49634 * 0.02562 * 11 10 9 13 13 C 1.39724 * 119.77399 * 0.02562 * 12 11 10 14 14 N 1.35878 * 133.37284 * 180.02562 * 13 12 11 15 15 C 1.31057 * 109.61882 * 179.97438 * 14 13 12 16 16 S 1.76201 * 125.07921 * 180.02562 * 15 14 13 17 17 C 1.81001 * 99.99804 * 359.97174 * 16 15 14 18 18 C 1.50699 * 109.46836 * 179.97438 * 17 16 15 19 19 O 1.21282 * 120.00459 * 0.02562 * 18 17 16 20 20 N 1.34782 * 119.99817 * 179.97438 * 18 17 16 21 21 C 1.46505 * 119.99733 * 180.02562 * 20 18 17 22 22 C 1.50696 * 109.46856 * 180.02562 * 21 20 18 23 23 H 1.08001 * 120.00126 * 0.02562 * 22 21 20 24 24 C 1.37878 * 120.00231 * 180.02562 * 22 21 20 25 25 N 1.31520 * 119.99457 * 359.97438 * 24 22 21 26 26 Si 1.86796 * 120.00544 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.47437 * 59.99386 * 26 24 22 28 28 H 1.48488 * 109.47543 * 180.02562 * 26 24 22 29 29 H 1.48501 * 109.46751 * 299.99836 * 26 24 22 30 30 H 1.08992 * 109.47022 * 60.00655 * 1 2 3 31 31 H 1.09006 * 109.47014 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47053 * 299.99599 * 1 2 3 33 33 H 1.08995 * 109.46897 * 239.99646 * 2 1 3 34 34 H 1.09003 * 109.46618 * 119.99646 * 2 1 3 35 35 H 1.09002 * 109.46897 * 59.99880 * 3 2 1 36 36 H 1.08992 * 109.46798 * 299.99482 * 3 2 1 37 37 H 1.08995 * 109.46897 * 59.99646 * 4 3 2 38 38 H 1.09003 * 109.46618 * 299.99646 * 4 3 2 39 39 H 1.08995 * 109.47130 * 59.99603 * 5 4 3 40 40 H 1.08997 * 109.46706 * 299.99966 * 5 4 3 41 41 H 1.08995 * 109.46897 * 59.99646 * 6 5 4 42 42 H 1.09003 * 109.46618 * 299.99646 * 6 5 4 43 43 H 1.08004 * 120.06708 * 0.02661 * 9 8 7 44 44 H 1.08002 * 119.78401 * 180.02562 * 10 9 8 45 45 H 1.08002 * 119.75670 * 180.02562 * 11 10 9 46 46 H 1.07996 * 120.10966 * 179.72183 * 12 11 10 47 47 H 1.08995 * 109.47370 * 300.00342 * 17 16 15 48 48 H 1.08999 * 109.46948 * 60.00239 * 17 16 15 49 49 H 0.96998 * 120.00007 * 0.02562 * 20 18 17 50 50 H 1.08994 * 109.47259 * 300.00813 * 21 20 18 51 51 H 1.08999 * 109.46903 * 60.00767 * 21 20 18 52 52 H 0.97002 * 119.99743 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0799 2.8851 0.0013 6 6 5.6100 2.8851 0.0026 7 7 6.0983 4.2663 0.0026 8 6 6.3712 5.0414 1.1179 9 6 6.2912 4.8211 2.4844 10 6 6.6446 5.8239 3.3637 11 6 7.0803 7.0524 2.8898 12 6 7.1659 7.2888 1.5360 13 6 6.8108 6.2840 0.6324 14 7 6.7884 6.2145 -0.7244 15 6 6.3692 5.0301 -1.0975 16 16 6.1851 4.5010 -2.7681 17 6 6.7173 5.9993 -3.6328 18 6 6.6412 5.7743 -5.1209 19 8 6.2638 4.7062 -5.5543 20 7 6.9915 6.7604 -5.9704 21 6 6.9170 6.5417 -7.4171 22 6 7.3602 7.7892 -8.1371 23 1 7.6671 8.6578 -7.5734 24 6 7.3739 7.8217 -9.5154 25 7 7.0006 6.7637 -10.2017 26 14 7.9239 9.3677 -10.4079 27 1 9.3233 9.6875 -10.0276 28 1 7.8471 9.1467 -11.8742 29 1 7.0380 10.4984 -10.0312 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 1.6766 1.9563 0.8900 36 1 1.6767 1.9562 -0.8900 37 1 3.9337 0.9285 -0.8890 38 1 3.9329 0.9289 0.8909 39 1 3.7162 3.3986 0.8912 40 1 3.7169 3.3991 -0.8887 41 1 5.9740 2.3713 -0.8871 42 1 5.9725 2.3711 0.8929 43 1 5.9531 3.8665 2.8597 44 1 6.5822 5.6508 4.4279 45 1 7.3545 7.8296 3.5879 46 1 7.5017 8.2492 1.1739 47 1 6.0664 6.8289 -3.3566 48 1 7.7442 6.2347 -3.3533 49 1 7.2930 7.6147 -5.6238 50 1 7.5681 5.7124 -7.6933 51 1 5.8901 6.3061 -7.6965 52 1 7.0098 6.7867 -11.1714 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000008759537.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:45 Heat of formation + Delta-G solvation = -14.255204 kcal Electronic energy + Delta-G solvation = -30113.694923 eV Core-core repulsion = 26010.074529 eV Total energy + Delta-G solvation = -4103.620394 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 375.172 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -43.01946 -40.59664 -38.36381 -37.54000 -36.24423 -35.66325 -34.43635 -33.18001 -31.69315 -31.17699 -30.35520 -28.93263 -28.76690 -25.38841 -24.87978 -24.45949 -23.12877 -22.52145 -21.95461 -21.73428 -21.43468 -19.33611 -18.46619 -18.24884 -17.64743 -17.56850 -17.08136 -16.92516 -16.84183 -16.54244 -16.12889 -15.70020 -15.50768 -15.23751 -14.85955 -14.84330 -14.81808 -14.62345 -14.31432 -14.08066 -14.01485 -13.75416 -13.71179 -13.56622 -12.95224 -12.91779 -12.79948 -12.68800 -12.65114 -12.46927 -12.36029 -12.25607 -11.95722 -11.86116 -11.73389 -11.72909 -11.53024 -11.39062 -11.21928 -11.13694 -11.01835 -10.81582 -10.11927 -9.92282 -9.12856 -8.56806 -8.30175 -6.46640 -0.15369 -0.12211 0.54769 0.80883 1.43384 1.46810 1.51331 1.55175 1.56070 1.67328 2.26789 2.46943 2.89622 3.04818 3.30620 3.57262 3.66278 3.71052 3.94883 3.97502 3.99464 4.03028 4.13950 4.24155 4.26224 4.27906 4.30199 4.38351 4.48070 4.54506 4.57290 4.74205 4.75317 4.82538 4.90026 5.01451 5.03773 5.06471 5.09683 5.20014 5.21558 5.21829 5.32355 5.40205 5.40910 5.43869 5.49664 5.56623 5.58196 5.60214 5.81456 5.90508 5.92690 6.61342 6.62898 6.71131 7.17501 7.31947 8.81550 Molecular weight = 375.17amu Principal moments of inertia in cm(-1) A = 0.007256 B = 0.001959 C = 0.001582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3857.904485 B =14289.310837 C =17698.254192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.124 4.124 3 C -0.119 4.119 4 C -0.110 4.110 5 C -0.128 4.128 6 C 0.104 3.896 7 N -0.470 5.470 8 C 0.041 3.959 9 C -0.113 4.113 10 C -0.097 4.097 11 C -0.120 4.120 12 C -0.088 4.088 13 C 0.018 3.982 14 N -0.523 5.523 15 C 0.237 3.763 16 S 0.063 5.937 17 C -0.125 4.125 18 C 0.518 3.482 19 O -0.582 6.582 20 N -0.696 5.696 21 C 0.267 3.733 22 C -0.559 4.559 23 H 0.084 0.916 24 C 0.005 3.995 25 N -0.928 5.928 26 Si 0.984 3.016 27 H -0.263 1.263 28 H -0.285 1.285 29 H -0.263 1.263 30 H 0.047 0.953 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.070 0.930 35 H 0.064 0.936 36 H 0.051 0.949 37 H 0.066 0.934 38 H 0.082 0.918 39 H 0.069 0.931 40 H 0.054 0.946 41 H 0.095 0.905 42 H 0.118 0.882 43 H 0.145 0.855 44 H 0.165 0.835 45 H 0.158 0.842 46 H 0.130 0.870 47 H 0.137 0.863 48 H 0.138 0.862 49 H 0.411 0.589 50 H -0.006 1.006 51 H -0.006 1.006 52 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.281 -7.708 33.032 34.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.162 4.162 3 C -0.157 4.157 4 C -0.148 4.148 5 C -0.167 4.167 6 C -0.017 4.017 7 N -0.161 5.161 8 C -0.070 4.070 9 C -0.134 4.134 10 C -0.117 4.117 11 C -0.141 4.141 12 C -0.108 4.108 13 C -0.102 4.102 14 N -0.248 5.248 15 C -0.137 4.137 16 S 0.293 5.707 17 C -0.276 4.276 18 C 0.302 3.698 19 O -0.464 6.464 20 N -0.346 5.346 21 C 0.144 3.856 22 C -0.597 4.597 23 H 0.102 0.898 24 C -0.195 4.195 25 N -0.567 5.567 26 Si 0.807 3.193 27 H -0.187 1.187 28 H -0.210 1.210 29 H -0.188 1.188 30 H 0.067 0.933 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.070 0.930 37 H 0.085 0.915 38 H 0.101 0.899 39 H 0.088 0.912 40 H 0.072 0.928 41 H 0.113 0.887 42 H 0.136 0.864 43 H 0.163 0.837 44 H 0.182 0.818 45 H 0.176 0.824 46 H 0.148 0.852 47 H 0.155 0.845 48 H 0.156 0.844 49 H 0.248 0.752 50 H 0.012 0.988 51 H 0.012 0.988 52 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.744 -9.049 31.493 33.267 hybrid contribution 0.463 1.503 -0.179 1.583 sum -5.281 -7.546 31.314 32.641 Atomic orbital electron populations 1.21797 0.95919 1.01887 1.01694 1.21529 0.95928 0.96402 1.02315 1.21591 0.95045 0.97236 1.01843 1.21486 0.95712 0.94278 1.03322 1.21911 0.92953 0.99161 1.02632 1.22207 0.95860 0.77664 1.05971 1.45358 1.54270 1.13494 1.03025 1.19296 1.05209 0.92227 0.90224 1.20298 1.03790 1.01795 0.87493 1.21349 0.97576 0.92052 1.00746 1.21292 1.00146 0.98659 0.93967 1.20546 1.00362 0.97512 0.92399 1.19539 1.05309 0.95421 0.89931 1.70925 1.24221 1.17314 1.12376 1.25806 1.01634 0.90375 0.95852 1.86215 1.82705 1.16674 0.85122 1.23562 1.09515 1.01579 0.92981 1.20140 0.77479 0.84163 0.87983 1.90688 1.49251 1.26940 1.79514 1.46089 1.64931 1.16085 1.07499 1.18636 0.94903 0.96546 0.75480 1.21579 1.46434 0.99326 0.92340 0.89811 1.26037 0.94662 1.00401 0.98369 1.70123 1.47453 1.31330 1.07774 0.85216 0.79284 0.78084 0.76708 1.18737 1.21036 1.18754 0.93336 0.92289 0.92525 0.92228 0.91169 0.91747 0.93040 0.91478 0.89894 0.91211 0.92751 0.88655 0.86400 0.83678 0.81769 0.82420 0.85188 0.84468 0.84433 0.75238 0.98805 0.98824 0.92188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.74 9.91 71.98 0.71 -1.03 16 2 C -0.12 -1.37 5.93 30.60 0.18 -1.19 16 3 C -0.12 -1.46 5.21 30.60 0.16 -1.30 16 4 C -0.11 -1.22 5.21 30.60 0.16 -1.06 16 5 C -0.13 -1.88 5.54 30.60 0.17 -1.71 16 6 C 0.10 1.63 5.94 86.38 0.51 2.14 16 7 N -0.47 -10.78 2.83 -515.62 -1.46 -12.25 16 8 C 0.04 0.92 6.87 38.72 0.27 1.19 16 9 C -0.11 -1.75 10.04 22.30 0.22 -1.53 16 10 C -0.10 -1.19 10.03 22.32 0.22 -0.96 16 11 C -0.12 -1.72 10.01 22.25 0.22 -1.49 16 12 C -0.09 -1.86 10.10 22.50 0.23 -1.63 16 13 C 0.02 0.49 7.22 39.42 0.28 0.77 16 14 N -0.52 -15.90 10.57 -188.40 -1.99 -17.89 16 15 C 0.24 6.65 7.93 179.58 1.42 8.07 16 16 S 0.06 1.84 20.68 -56.49 -1.17 0.67 16 17 C -0.12 -3.76 5.64 71.24 0.40 -3.36 16 18 C 0.52 20.75 7.85 87.66 0.69 21.44 16 19 O -0.58 -28.16 15.86 -3.04 -0.05 -28.21 16 20 N -0.70 -29.35 5.55 -466.78 -2.59 -31.94 16 21 C 0.27 14.50 5.43 85.63 0.46 14.96 16 22 C -0.56 -30.25 9.28 25.60 0.24 -30.01 16 23 H 0.08 4.10 7.60 -2.91 -0.02 4.07 16 24 C 0.01 0.29 5.46 84.65 0.46 0.75 16 25 N -0.93 -55.63 13.29 21.45 0.28 -55.34 16 26 Si 0.98 42.30 29.54 68.60 2.03 44.33 16 27 H -0.26 -10.73 7.11 99.48 0.71 -10.03 16 28 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 29 H -0.26 -10.74 7.11 99.48 0.71 -10.04 16 30 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.06 0.59 8.14 -2.38 -0.02 0.57 16 32 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 39 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.10 1.55 7.68 -2.39 -0.02 1.53 16 42 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 43 H 0.15 1.43 8.06 -2.91 -0.02 1.41 16 44 H 0.16 0.82 8.06 -2.91 -0.02 0.79 16 45 H 0.16 1.25 8.06 -2.91 -0.02 1.22 16 46 H 0.13 2.54 8.06 -2.91 -0.02 2.51 16 47 H 0.14 3.73 8.14 -2.40 -0.02 3.71 16 48 H 0.14 3.73 8.14 -2.40 -0.02 3.71 16 49 H 0.41 14.41 8.32 -92.71 -0.77 13.64 16 50 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 51 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 52 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 Total: -1.00 -75.01 447.65 2.21 -72.80 By element: Atomic # 1 Polarization: 23.64 SS G_CDS: 0.13 Total: 23.78 kcal Atomic # 6 Polarization: -2.97 SS G_CDS: 7.02 Total: 4.05 kcal Atomic # 7 Polarization: -111.66 SS G_CDS: -5.76 Total: -117.42 kcal Atomic # 8 Polarization: -28.16 SS G_CDS: -0.05 Total: -28.21 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 2.03 Total: 44.33 kcal Atomic # 16 Polarization: 1.84 SS G_CDS: -1.17 Total: 0.67 kcal Total: -75.01 2.21 -72.80 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008759537.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.541 kcal (2) G-P(sol) polarization free energy of solvation -75.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds