Wall clock time and date at job start Tue Mar 31 2020 06:02:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46494 * 109.47150 * 2 1 4 4 C 1.36481 * 119.88771 * 270.01596 * 3 2 1 5 5 S 1.76206 * 119.22951 * 359.97438 * 4 3 2 6 6 C 1.81006 * 99.99985 * 179.97438 * 5 4 3 7 7 C 1.52999 * 109.47372 * 179.97438 * 6 5 4 8 8 C 1.50698 * 109.47271 * 180.02562 * 7 6 5 9 9 H 1.08000 * 119.99655 * 359.97438 * 8 7 6 10 10 C 1.37871 * 120.00235 * 180.02562 * 8 7 6 11 11 N 1.31513 * 119.99882 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 120.00082 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.47437 * 359.97438 * 12 10 8 14 14 H 1.48501 * 109.47026 * 119.99936 * 12 10 8 15 15 H 1.48504 * 109.46775 * 239.99657 * 12 10 8 16 16 N 1.31134 * 121.53687 * 179.97438 * 4 3 2 17 17 C 1.34859 * 121.60898 * 0.02562 * 16 4 3 18 18 S 1.75870 * 130.47707 * 179.97438 * 17 16 4 19 19 C 1.75285 * 92.38833 * 179.78769 * 18 17 16 20 20 C 1.33402 * 111.21208 * 0.34736 * 19 18 17 21 21 C 1.47676 * 122.83646 * 179.85844 * 20 19 18 22 22 C 1.36024 * 125.93243 * 309.43028 * 21 20 19 23 23 C 1.41012 * 106.73263 * 179.85074 * 22 21 20 24 24 C 1.34669 * 107.04266 * 0.40305 * 23 22 21 25 25 O 1.34431 * 108.67768 * 359.75321 * 24 23 22 26 26 C 1.39109 * 119.60243 * 359.97438 * 17 16 4 27 27 C 1.34704 * 119.88462 * 89.99517 * 3 2 1 28 28 O 1.21919 * 120.52995 * 359.97438 * 27 3 2 29 29 H 1.08994 * 109.47895 * 300.00457 * 1 2 3 30 30 H 1.09004 * 109.47261 * 60.00508 * 1 2 3 31 31 H 1.09007 * 109.47634 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47098 * 239.99726 * 2 1 3 33 33 H 1.09000 * 109.46627 * 119.99850 * 2 1 3 34 34 H 1.09005 * 109.46654 * 300.00163 * 6 5 4 35 35 H 1.09002 * 109.47035 * 59.99637 * 6 5 4 36 36 H 1.08999 * 109.46751 * 299.99674 * 7 6 5 37 37 H 1.08994 * 109.46978 * 59.99294 * 7 6 5 38 38 H 0.97005 * 120.00388 * 180.02562 * 11 10 8 39 39 H 1.08004 * 124.39178 * 180.23731 * 19 18 17 40 40 H 1.07998 * 126.63352 * 359.95710 * 22 21 20 41 41 H 1.08008 * 126.48124 * 180.15148 * 23 22 21 42 42 H 1.07997 * 125.66283 * 179.72742 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2447 2.0225 -1.1833 5 16 1.9434 1.1697 -2.6955 6 6 2.3983 2.4604 -3.8802 7 6 2.2128 1.9336 -5.3047 8 6 2.5921 3.0080 -6.2910 9 1 2.9311 3.9704 -5.9372 10 6 2.5053 2.7627 -7.6449 11 7 2.0919 1.5908 -8.0757 12 14 2.9747 4.0947 -8.8675 13 1 3.4035 5.3120 -8.1329 14 1 4.0902 3.6124 -9.7210 15 1 1.8032 4.4188 -9.7205 16 7 2.6811 3.2585 -1.2210 17 6 2.9279 3.9556 -0.0933 18 16 3.5096 5.6006 0.1277 19 6 3.4547 5.4634 1.8743 20 6 3.0334 4.2549 2.2505 21 6 2.8938 3.8606 3.6668 22 6 3.8420 4.0015 4.6318 23 6 3.2839 3.5001 5.8257 24 6 2.0405 3.0746 5.5319 25 8 1.8077 3.2938 4.2262 26 6 2.7167 3.3573 1.1446 27 6 2.2419 2.0140 1.1679 28 8 2.0407 1.4466 2.2282 29 1 -0.3635 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8901 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8932 -0.5138 0.8900 34 1 1.7622 3.3326 -3.7292 35 1 3.4409 2.7406 -3.7298 36 1 2.8492 1.0616 -5.4553 37 1 1.1704 1.6530 -5.4553 38 1 2.0311 1.4180 -9.0283 39 1 3.7283 6.2542 2.5572 40 1 4.8305 4.4185 4.5080 41 1 3.7644 3.4606 6.7923 42 1 1.3457 2.6305 6.2293 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000008981267.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:41 Heat of formation + Delta-G solvation = 32.065191 kcal Electronic energy + Delta-G solvation = -28534.686721 eV Core-core repulsion = 24506.442950 eV Total energy + Delta-G solvation = -4028.243771 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 376.070 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.52705 -41.63424 -37.68638 -37.22597 -34.88134 -33.83672 -32.98092 -31.11405 -30.97420 -30.36981 -28.67880 -25.96335 -25.28391 -24.55411 -23.48337 -22.29207 -21.67567 -21.39567 -20.01585 -19.20199 -18.28999 -17.53523 -16.96905 -16.80882 -16.64503 -16.23778 -15.84471 -15.22308 -15.00329 -14.58793 -14.33069 -14.12436 -14.05200 -13.92319 -13.64535 -13.45932 -13.21253 -12.99606 -12.89351 -12.74250 -12.36380 -12.23948 -12.11363 -11.84735 -11.50581 -11.41636 -11.12857 -10.74673 -10.46337 -10.43882 -10.34530 -10.14220 -10.05050 -9.98598 -9.78548 -9.27575 -8.98656 -8.81642 -8.53264 -8.22136 -7.59229 -6.17405 -4.21887 0.05267 0.82765 1.06762 1.14176 1.54527 1.67981 2.02458 2.23587 2.54719 2.59689 3.05792 3.23286 3.31550 3.35665 3.39554 4.13582 4.33745 4.34480 4.47116 4.72620 4.86613 4.88134 4.90894 4.94709 5.04951 5.18094 5.19360 5.42726 5.52042 5.56987 5.65322 5.75889 5.82426 5.84788 5.89935 5.98307 6.00068 6.04682 6.34886 6.40680 6.53514 7.06440 7.35220 7.37329 7.40476 7.70534 7.78007 8.12931 8.82753 9.43165 10.93406 Molecular weight = 376.07amu Principal moments of inertia in cm(-1) A = 0.014575 B = 0.002391 C = 0.002085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.661646 B =11706.312709 C =13425.377676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.086 3.914 3 N -0.516 5.516 4 C 0.385 3.615 5 S -0.006 6.006 6 C -0.081 4.081 7 C 0.033 3.967 8 C -0.518 4.518 9 H 0.062 0.938 10 C 0.060 3.940 11 N -0.891 5.891 12 Si 0.898 3.102 13 H -0.271 1.271 14 H -0.283 1.283 15 H -0.283 1.283 16 N -0.513 5.513 17 C 0.109 3.891 18 S 0.221 5.779 19 C -0.221 4.221 20 C 0.037 3.963 21 C 0.054 3.946 22 C -0.196 4.196 23 C -0.217 4.217 24 C -0.033 4.033 25 O -0.149 6.149 26 C -0.248 4.248 27 C 0.564 3.436 28 O -0.513 6.513 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.102 0.898 33 H 0.103 0.897 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.028 0.972 37 H 0.028 0.972 38 H 0.263 0.737 39 H 0.180 0.820 40 H 0.148 0.852 41 H 0.148 0.852 42 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.627 2.421 23.164 23.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.036 4.036 3 N -0.239 5.239 4 C 0.011 3.989 5 S 0.232 5.768 6 C -0.229 4.229 7 C -0.006 4.006 8 C -0.558 4.558 9 H 0.080 0.920 10 C -0.142 4.142 11 N -0.529 5.529 12 Si 0.726 3.274 13 H -0.195 1.195 14 H -0.209 1.209 15 H -0.209 1.209 16 N -0.242 5.242 17 C -0.129 4.129 18 S 0.485 5.515 19 C -0.356 4.356 20 C 0.024 3.976 21 C 0.001 3.999 22 C -0.215 4.215 23 C -0.236 4.236 24 C -0.102 4.102 25 O -0.043 6.043 26 C -0.267 4.267 27 C 0.358 3.642 28 O -0.390 6.390 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.099 0.901 32 H 0.120 0.880 33 H 0.122 0.878 34 H 0.110 0.890 35 H 0.109 0.891 36 H 0.047 0.953 37 H 0.047 0.953 38 H 0.073 0.927 39 H 0.198 0.802 40 H 0.166 0.834 41 H 0.166 0.834 42 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 0.381 2.404 21.669 21.806 hybrid contribution 0.371 0.416 1.367 1.477 sum 0.752 2.820 23.037 23.221 Atomic orbital electron populations 1.22112 0.93511 1.03638 1.03319 1.22061 0.96566 0.79505 1.05425 1.46511 1.56050 1.15772 1.05580 1.25656 0.90045 0.90901 0.92344 1.86145 1.78637 1.21772 0.90255 1.24206 1.05254 0.96825 0.96609 1.19035 0.98521 0.97491 0.85559 1.21047 1.45326 0.99079 0.90370 0.91971 1.25006 0.94972 0.95737 0.98509 1.69961 1.46392 1.21774 1.14802 0.86434 0.78220 0.81778 0.81011 1.19530 1.20858 1.20864 1.68641 1.24631 1.04623 1.26311 1.23884 0.98062 0.99813 0.91159 1.84216 1.64434 1.04825 0.97999 1.25233 1.10706 1.00134 0.99548 1.16719 1.01249 0.91946 0.87674 1.19772 0.86971 1.01512 0.91628 1.21741 1.00445 1.07303 0.92048 1.21677 0.95874 1.06387 0.99708 1.24093 0.98910 1.04331 0.82863 1.84223 1.37323 1.60785 1.21954 1.20411 1.16852 0.96637 0.92837 1.16400 0.78750 0.85966 0.83084 1.90919 1.52420 1.67674 1.27942 0.91899 0.91202 0.90072 0.87957 0.87832 0.89039 0.89069 0.95335 0.95322 0.92715 0.80247 0.83410 0.83428 0.78278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.76 10.24 37.16 0.38 -1.38 16 2 C 0.09 1.01 5.61 -4.05 -0.02 0.99 16 3 N -0.52 -7.65 2.61 -119.11 -0.31 -7.96 16 4 C 0.39 6.01 7.79 -88.52 -0.69 5.32 16 5 S -0.01 -0.09 20.01 -107.50 -2.15 -2.24 16 6 C -0.08 -1.52 4.75 37.16 0.18 -1.34 16 7 C 0.03 0.78 4.98 -27.88 -0.14 0.64 16 8 C -0.52 -13.52 9.11 -34.44 -0.31 -13.83 16 9 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 10 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 11 N -0.89 -25.10 13.29 55.43 0.74 -24.36 16 12 Si 0.90 20.52 29.54 -169.99 -5.02 15.50 16 13 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 14 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 15 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 16 N -0.51 -8.46 9.13 -11.44 -0.10 -8.57 16 17 C 0.11 1.68 7.67 -15.90 -0.12 1.55 16 18 S 0.22 2.57 23.22 -107.50 -2.50 0.08 16 19 C -0.22 -2.40 10.80 29.04 0.31 -2.08 16 20 C 0.04 0.51 5.85 -104.66 -0.61 -0.10 16 21 C 0.05 0.76 6.16 -36.52 -0.23 0.53 16 22 C -0.20 -2.29 10.80 -39.33 -0.42 -2.71 16 23 C -0.22 -2.25 10.89 -39.79 -0.43 -2.68 16 24 C -0.03 -0.36 12.08 29.47 0.36 0.00 16 25 O -0.15 -2.18 9.50 -11.36 -0.11 -2.29 16 26 C -0.25 -3.95 6.07 -104.86 -0.64 -4.59 16 27 C 0.56 9.37 7.49 -14.65 -0.11 9.26 16 28 O -0.51 -9.25 14.70 -10.71 -0.16 -9.40 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.08 0.66 8.14 -51.92 -0.42 0.24 16 32 H 0.10 1.07 6.55 -51.93 -0.34 0.73 16 33 H 0.10 1.18 7.43 -51.93 -0.39 0.80 16 34 H 0.09 1.73 8.11 -51.91 -0.42 1.31 16 35 H 0.09 1.72 8.11 -51.92 -0.42 1.30 16 36 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 39 H 0.18 1.37 8.06 -52.48 -0.42 0.95 16 40 H 0.15 1.40 8.06 -52.49 -0.42 0.98 16 41 H 0.15 1.11 8.06 -52.48 -0.42 0.69 16 42 H 0.20 1.38 8.06 -52.49 -0.42 0.96 16 LS Contribution 388.24 15.07 5.85 5.85 Total: -1.00 -31.74 388.24 -11.27 -43.01 By element: Atomic # 1 Polarization: 4.21 SS G_CDS: -4.91 Total: -0.70 kcal Atomic # 6 Polarization: -6.31 SS G_CDS: -2.60 Total: -8.91 kcal Atomic # 7 Polarization: -41.21 SS G_CDS: 0.32 Total: -40.89 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: -0.27 Total: -11.69 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Atomic # 16 Polarization: 2.48 SS G_CDS: -4.65 Total: -2.17 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -31.74 -11.27 -43.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008981267.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.075 kcal (2) G-P(sol) polarization free energy of solvation -31.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds