Wall clock time and date at job start Tue Mar 31 2020 05:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38784 * 120.04952 * 2 1 4 4 C 1.40490 * 119.08308 * 179.97438 * 3 2 1 5 5 C 1.39532 * 120.39829 * 359.97438 * 4 3 2 6 6 C 1.36568 * 119.87828 * 0.02562 * 5 4 3 7 7 C 1.38689 * 120.04836 * 179.97438 * 2 1 3 8 8 O 1.35603 * 119.73810 * 359.75218 * 7 2 1 9 9 C 1.34794 * 116.99894 * 174.20171 * 8 7 2 10 10 H 1.08003 * 120.00293 * 354.48877 * 9 8 7 11 11 C 1.38713 * 119.99695 * 174.48409 * 9 8 7 12 12 N 1.31509 * 120.00312 * 0.02562 * 11 9 8 13 13 Si 1.86807 * 119.99984 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.46670 * 60.00089 * 13 11 9 15 15 H 1.48499 * 109.47184 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.46995 * 300.00733 * 13 11 9 17 17 C 1.47309 * 106.07947 * 179.97438 * 4 3 2 18 18 O 1.22013 * 127.39742 * 179.97438 * 17 4 3 19 19 C 1.41997 * 105.19744 * 359.97438 * 17 4 3 20 20 C 1.36280 * 125.74316 * 180.02562 * 19 17 4 21 21 C 1.46137 * 120.00030 * 7.97971 * 20 19 17 22 22 C 1.37842 * 126.87036 * 37.38351 * 21 20 19 23 23 N 1.35595 * 109.48142 * 179.88627 * 22 21 20 24 24 C 1.46499 * 124.73125 * 180.11895 * 23 22 21 25 25 C 1.38015 * 110.54275 * 0.38683 * 23 22 21 26 26 C 1.39156 * 132.96109 * 179.81852 * 25 23 22 27 27 C 1.37774 * 119.95019 * 180.02562 * 26 25 23 28 28 C 1.38735 * 120.63193 * 359.95838 * 27 26 25 29 29 C 1.37779 * 120.28001 * 359.97438 * 28 27 26 30 30 C 1.39242 * 119.68498 * 0.02562 * 29 28 27 31 31 O 1.35041 * 132.13647 * 359.97109 * 3 2 1 32 32 H 1.09008 * 109.47096 * 270.02896 * 1 2 3 33 33 H 1.09001 * 109.47428 * 30.02069 * 1 2 3 34 34 H 1.09001 * 109.47354 * 150.02738 * 1 2 3 35 35 H 1.08003 * 120.05951 * 180.02562 * 5 4 3 36 36 H 1.08007 * 119.89375 * 180.02562 * 6 5 4 37 37 H 0.97004 * 120.00462 * 179.97438 * 12 11 9 38 38 H 1.07999 * 120.00007 * 187.98804 * 20 19 17 39 39 H 1.08000 * 125.25658 * 0.02562 * 22 21 20 40 40 H 1.09001 * 109.46839 * 270.31100 * 24 23 22 41 41 H 1.09000 * 109.46797 * 30.30309 * 24 23 22 42 42 H 1.08992 * 109.47289 * 150.30963 * 24 23 22 43 43 H 1.07992 * 120.02089 * 0.02562 * 26 25 23 44 44 H 1.07999 * 119.68381 * 179.97438 * 27 26 25 45 45 H 1.08005 * 119.85539 * 180.02562 * 28 27 26 46 46 H 1.08005 * 120.15854 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2020 1.2013 0.0000 4 6 3.6067 1.1776 0.0005 5 6 4.2923 -0.0376 0.0016 6 6 3.5953 -1.2120 0.0016 7 6 2.2015 -1.2005 0.0005 8 8 1.5191 -2.3723 0.0062 9 6 2.2433 -3.5027 -0.1149 10 1 3.3059 -3.4462 -0.2997 11 6 1.6237 -4.7387 -0.0021 12 7 0.3298 -4.8076 0.2225 13 14 2.6271 -6.3053 -0.1706 14 1 3.6791 -6.3343 0.8771 15 1 1.7367 -7.4830 -0.0114 16 1 3.2632 -6.3438 -1.5119 17 6 4.0385 2.5860 -0.0002 18 8 5.1825 3.0103 0.0004 19 6 2.8375 3.3436 -0.0018 20 6 2.7543 4.7038 -0.0035 21 6 3.9608 5.5094 -0.1794 22 6 5.0306 5.2279 -1.0018 23 7 5.9555 6.2136 -0.8939 24 6 7.2244 6.2511 -1.6251 25 6 5.5377 7.1735 0.0054 26 6 6.1094 8.3566 0.4636 27 6 5.4416 9.1306 1.3873 28 6 4.1992 8.7432 1.8681 29 6 3.6161 7.5760 1.4255 30 6 4.2800 6.7842 0.4921 31 8 1.7888 2.4870 -0.0005 32 1 -0.3634 0.0005 1.0277 33 1 -0.3634 0.8898 -0.5141 34 1 -0.3634 -0.8902 -0.5134 35 1 5.3723 -0.0495 0.0025 36 1 4.1258 -2.1529 0.0029 37 1 -0.1036 -5.6719 0.3011 38 1 1.7968 5.1864 0.1254 39 1 5.1175 4.3580 -1.6359 40 1 7.9940 5.7436 -1.0435 41 1 7.1052 5.7497 -2.5856 42 1 7.5181 7.2876 -1.7902 43 1 7.0757 8.6678 0.0954 44 1 5.8895 10.0477 1.7403 45 1 3.6866 9.3597 2.5917 46 1 2.6486 7.2765 1.8008 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000009420654.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:04 Heat of formation + Delta-G solvation = 36.536154 kcal Electronic energy + Delta-G solvation = -32307.857862 eV Core-core repulsion = 27902.870150 eV Total energy + Delta-G solvation = -4404.987712 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 375.130 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.89068 -41.33885 -39.04010 -37.82693 -37.15397 -36.04266 -34.07504 -32.74026 -32.11974 -31.09487 -30.44722 -29.48642 -28.73481 -26.73007 -26.30513 -25.47017 -24.45887 -22.87691 -22.24154 -21.48538 -21.20450 -19.86190 -19.20804 -18.55395 -17.14699 -17.02074 -16.72605 -16.26999 -15.88710 -15.81270 -15.62420 -15.50266 -14.88446 -14.48162 -14.35805 -14.16213 -14.10321 -13.97985 -13.79688 -13.28574 -13.21055 -13.10361 -12.97762 -12.74728 -12.62877 -12.40992 -12.32829 -12.08459 -11.91348 -11.80274 -11.50078 -11.28452 -11.21391 -11.07600 -11.01845 -10.81841 -10.66239 -10.05361 -9.66436 -9.26883 -9.11031 -9.02461 -8.29602 -7.92677 -7.51457 -7.19289 -6.77367 -4.31160 0.38389 1.06091 1.47886 1.86604 2.11463 2.59293 2.70420 2.95857 2.99940 3.02694 3.10832 3.39988 3.75628 3.80464 4.30614 4.39171 4.46809 4.50141 4.69990 4.81813 4.83108 4.89437 4.96812 5.01040 5.13912 5.18674 5.21060 5.31183 5.35244 5.49674 5.53024 5.63945 5.67232 5.75323 5.85446 5.95385 6.11837 6.14261 6.22983 6.33307 6.36912 6.41717 6.46174 6.59262 6.63372 6.72587 6.78258 6.93401 7.02548 7.07765 7.09790 7.10547 7.20076 7.66917 7.67972 7.88911 8.66191 9.29326 10.37952 Molecular weight = 375.13amu Principal moments of inertia in cm(-1) A = 0.021281 B = 0.001860 C = 0.001755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.426345 B =15051.284223 C =15949.332854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.178 4.178 3 C 0.174 3.826 4 C -0.362 4.362 5 C 0.029 3.971 6 C -0.258 4.258 7 C 0.202 3.798 8 O -0.142 6.142 9 C -0.392 4.392 10 H 0.100 0.900 11 C 0.044 3.956 12 N -0.842 5.842 13 Si 0.947 3.053 14 H -0.266 1.266 15 H -0.275 1.275 16 H -0.266 1.266 17 C 0.412 3.588 18 O -0.463 6.463 19 C -0.048 4.048 20 C 0.012 3.988 21 C -0.182 4.182 22 C 0.142 3.858 23 N -0.475 5.475 24 C 0.076 3.924 25 C 0.084 3.916 26 C -0.123 4.123 27 C -0.109 4.109 28 C -0.142 4.142 29 C -0.077 4.077 30 C -0.072 4.072 31 O -0.219 6.219 32 H 0.058 0.942 33 H 0.054 0.946 34 H 0.073 0.927 35 H 0.118 0.882 36 H 0.139 0.861 37 H 0.277 0.723 38 H 0.139 0.861 39 H 0.176 0.824 40 H 0.073 0.927 41 H 0.085 0.915 42 H 0.081 0.919 43 H 0.117 0.883 44 H 0.123 0.877 45 H 0.122 0.878 46 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.987 21.110 -1.995 23.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.180 4.180 3 C 0.128 3.872 4 C -0.365 4.365 5 C 0.010 3.990 6 C -0.277 4.277 7 C 0.143 3.857 8 O -0.042 6.042 9 C -0.467 4.467 10 H 0.118 0.882 11 C -0.163 4.163 12 N -0.473 5.473 13 Si 0.770 3.230 14 H -0.191 1.191 15 H -0.200 1.200 16 H -0.191 1.191 17 C 0.299 3.701 18 O -0.347 6.347 19 C -0.093 4.093 20 C -0.008 4.008 21 C -0.188 4.188 22 C 0.012 3.988 23 N -0.156 5.156 24 C -0.066 4.066 25 C -0.020 4.020 26 C -0.143 4.143 27 C -0.128 4.128 28 C -0.161 4.161 29 C -0.096 4.096 30 C -0.076 4.076 31 O -0.128 6.128 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.092 0.908 35 H 0.136 0.864 36 H 0.156 0.844 37 H 0.088 0.912 38 H 0.157 0.843 39 H 0.193 0.807 40 H 0.092 0.908 41 H 0.104 0.896 42 H 0.100 0.900 43 H 0.135 0.865 44 H 0.141 0.859 45 H 0.140 0.860 46 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 9.164 21.097 -2.131 23.100 hybrid contribution 0.613 -1.020 0.020 1.190 sum 9.778 20.077 -2.111 22.431 Atomic orbital electron populations 1.20342 0.90345 1.02169 1.01694 1.17561 0.96014 0.86447 1.18025 1.18714 0.91630 0.82793 0.94020 1.20494 0.94230 0.95390 1.26351 1.19906 0.98759 0.89630 0.90685 1.20844 0.93663 0.98789 1.14416 1.18788 0.90012 0.86376 0.90498 1.83902 1.35315 1.11033 1.73904 1.21539 0.93780 0.80991 1.50424 0.88219 1.25446 0.96316 0.98906 0.95675 1.70000 1.08908 1.27009 1.41423 0.85674 0.78905 0.78815 0.79564 1.19096 1.19965 1.19100 1.19195 0.88432 0.88467 0.73983 1.90641 1.22696 1.79163 1.42182 1.20613 0.87863 0.91284 1.09517 1.20441 0.97161 0.87912 0.95306 1.18612 0.96653 0.97161 1.06401 1.22586 0.86791 0.90667 0.98739 1.43614 1.17242 1.18721 1.35987 1.22013 0.83783 1.03784 0.96979 1.18226 0.95463 0.92784 0.95522 1.20001 1.00413 0.93362 1.00571 1.20736 0.95359 0.99415 0.97336 1.20887 0.96196 0.97265 1.01755 1.20481 0.99502 0.93775 0.95804 1.18932 0.94402 0.95009 0.99281 1.84267 1.31641 1.13534 1.83331 0.92354 0.92693 0.90835 0.86379 0.84355 0.91245 0.84350 0.80712 0.90817 0.89614 0.90025 0.86520 0.85910 0.85990 0.85869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.71 9.79 36.01 0.35 -1.35 16 2 C -0.18 -3.79 5.91 -104.25 -0.62 -4.40 16 3 C 0.17 3.50 6.99 -38.53 -0.27 3.23 16 4 C -0.36 -7.18 6.37 -104.88 -0.67 -7.85 16 5 C 0.03 0.56 10.04 -39.70 -0.40 0.16 16 6 C -0.26 -5.36 9.06 -39.76 -0.36 -5.72 16 7 C 0.20 4.62 6.62 -38.99 -0.26 4.37 16 8 O -0.14 -3.69 8.76 0.60 0.01 -3.69 16 9 C -0.39 -9.96 9.43 30.91 0.29 -9.67 16 10 H 0.10 2.31 5.27 -52.48 -0.28 2.03 16 11 C 0.04 1.11 5.49 -17.51 -0.10 1.01 16 12 N -0.84 -22.52 13.67 55.48 0.76 -21.76 16 13 Si 0.95 18.72 29.55 -169.99 -5.02 13.69 16 14 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 15 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 16 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 17 C 0.41 7.62 7.10 -34.46 -0.24 7.37 16 18 O -0.46 -8.65 13.75 4.91 0.07 -8.59 16 19 C -0.05 -0.81 6.87 -38.85 -0.27 -1.08 16 20 C 0.01 0.17 10.24 -37.12 -0.38 -0.21 16 21 C -0.18 -2.56 5.67 -103.06 -0.58 -3.15 16 22 C 0.14 1.89 8.58 -16.03 -0.14 1.76 16 23 N -0.47 -5.45 3.15 -121.12 -0.38 -5.83 16 24 C 0.08 0.55 10.98 59.85 0.66 1.20 16 25 C 0.08 1.02 6.78 -83.94 -0.57 0.45 16 26 C -0.12 -1.22 9.89 -39.41 -0.39 -1.61 16 27 C -0.11 -0.99 10.01 -39.57 -0.40 -1.39 16 28 C -0.14 -1.36 10.03 -39.57 -0.40 -1.76 16 29 C -0.08 -0.87 10.09 -39.38 -0.40 -1.27 16 30 C -0.07 -0.96 6.35 -104.92 -0.67 -1.62 16 31 O -0.22 -4.04 10.59 0.50 0.01 -4.04 16 32 H 0.06 1.07 8.14 -51.92 -0.42 0.65 16 33 H 0.05 0.93 8.09 -51.93 -0.42 0.51 16 34 H 0.07 1.50 7.52 -51.93 -0.39 1.11 16 35 H 0.12 1.98 8.06 -52.48 -0.42 1.56 16 36 H 0.14 2.75 5.68 -52.48 -0.30 2.45 16 37 H 0.28 6.80 8.31 -40.82 -0.34 6.46 16 38 H 0.14 1.60 8.06 -52.49 -0.42 1.17 16 39 H 0.18 2.28 6.75 -52.49 -0.35 1.92 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.09 0.49 8.13 -51.93 -0.42 0.07 16 42 H 0.08 0.43 7.97 -51.93 -0.41 0.01 16 43 H 0.12 0.87 7.98 -52.49 -0.42 0.46 16 44 H 0.12 0.79 8.06 -52.49 -0.42 0.36 16 45 H 0.12 0.87 8.06 -52.48 -0.42 0.45 16 46 H 0.12 1.20 8.06 -52.48 -0.42 0.78 16 LS Contribution 395.35 15.07 5.96 5.96 Total: -1.00 -30.54 395.35 -9.49 -40.03 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -5.09 Total: 5.73 kcal Atomic # 6 Polarization: -15.71 SS G_CDS: -5.79 Total: -21.50 kcal Atomic # 7 Polarization: -27.97 SS G_CDS: 0.38 Total: -27.60 kcal Atomic # 8 Polarization: -16.39 SS G_CDS: 0.08 Total: -16.32 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -5.02 Total: 13.69 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -30.54 -9.49 -40.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000009420654.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.567 kcal (2) G-P(sol) polarization free energy of solvation -30.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds