Wall clock time and date at job start Tue Mar 31 2020 05:06:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46499 * 109.47058 * 2 1 4 4 C 1.35593 * 124.73338 * 265.31203 * 3 2 1 5 5 C 1.37837 * 109.48199 * 180.18299 * 4 3 2 6 6 C 1.46142 * 126.87112 * 179.83125 * 5 4 3 7 7 C 1.36275 * 119.99830 * 318.33958 * 6 5 4 8 8 O 1.35402 * 125.74472 * 172.26939 * 7 6 5 9 9 C 1.35039 * 111.43462 * 179.97438 * 8 7 6 10 10 C 1.38788 * 132.14016 * 180.31808 * 9 8 7 11 11 C 1.38690 * 119.89995 * 180.19174 * 10 9 8 12 12 O 1.35601 * 119.73696 * 179.73102 * 11 10 9 13 13 C 1.34793 * 116.99897 * 5.30398 * 12 11 10 14 14 H 1.07998 * 120.00060 * 354.89282 * 13 12 11 15 15 C 1.38722 * 119.99893 * 174.88368 * 13 12 11 16 16 N 1.31513 * 119.99759 * 0.02562 * 15 13 12 17 17 Si 1.86792 * 119.99801 * 179.72713 * 15 13 12 18 18 H 1.48507 * 109.47155 * 180.27780 * 17 15 13 19 19 H 1.48503 * 109.47339 * 300.27662 * 17 15 13 20 20 H 1.48500 * 109.47418 * 60.28065 * 17 15 13 21 21 C 1.39385 * 120.52612 * 359.45104 * 11 10 9 22 22 C 1.36572 * 120.21519 * 0.27933 * 21 11 10 23 23 C 1.39534 * 119.87544 * 359.97438 * 22 21 11 24 24 C 1.42006 * 125.74675 * 352.22974 * 7 6 5 25 25 O 1.22015 * 127.39638 * 0.05611 * 24 7 6 26 26 C 1.47578 * 106.26269 * 359.56380 * 5 4 3 27 27 C 1.39245 * 133.87569 * 180.29547 * 26 5 4 28 28 C 1.37781 * 119.68484 * 179.97438 * 27 26 5 29 29 C 1.38730 * 120.27929 * 0.02562 * 28 27 26 30 30 C 1.37770 * 120.63269 * 359.97438 * 29 28 27 31 31 C 1.38015 * 124.72424 * 85.00490 * 3 2 1 32 32 H 1.08993 * 109.47181 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.46734 * 299.99740 * 1 2 3 34 34 H 1.08994 * 109.47007 * 59.99369 * 1 2 3 35 35 H 1.09002 * 109.46893 * 240.00765 * 2 1 3 36 36 H 1.09002 * 109.47315 * 120.00510 * 2 1 3 37 37 H 1.08002 * 125.26092 * 0.03757 * 4 3 2 38 38 H 1.07999 * 119.99796 * 138.34423 * 6 5 4 39 39 H 1.08001 * 120.04696 * 359.93806 * 10 9 8 40 40 H 0.96995 * 119.99909 * 359.72156 * 16 15 13 41 41 H 1.08004 * 119.89229 * 180.29222 * 21 11 10 42 42 H 1.08003 * 120.06419 * 179.97438 * 22 21 11 43 43 H 1.08000 * 120.15058 * 359.97438 * 27 26 5 44 44 H 1.08001 * 119.86025 * 179.97438 * 28 27 26 45 45 H 1.08004 * 119.68198 * 179.97438 * 29 28 27 46 46 H 1.08006 * 120.02302 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3617 2.0792 -1.1106 5 6 2.7809 3.3415 -0.7489 6 6 3.2391 4.4030 -1.6428 7 6 4.0610 4.1058 -2.6883 8 8 4.4353 4.9618 -3.6684 9 6 5.2562 4.3642 -4.5587 10 6 5.8867 4.8315 -5.7034 11 6 6.6890 3.9794 -6.4475 12 8 7.2991 4.4378 -7.5683 13 6 7.1732 5.7522 -7.8395 14 1 6.5391 6.3724 -7.2234 15 6 7.8584 6.3083 -8.9099 16 7 8.6303 5.5529 -9.6603 17 14 7.6779 8.1281 -9.2903 18 1 8.5014 8.4696 -10.4781 19 1 6.2526 8.4362 -9.5711 20 1 8.1364 8.9255 -8.1244 21 6 6.8779 2.6570 -6.0492 22 6 6.2681 2.1850 -4.9219 23 6 5.4540 3.0297 -4.1665 24 6 4.6699 2.8464 -2.9330 25 8 4.5657 1.8307 -2.2650 26 6 2.6684 3.4089 0.7211 27 6 2.9302 4.3989 1.6646 28 6 2.7150 4.1419 3.0010 29 6 2.2401 2.9033 3.4075 30 6 1.9769 1.9150 2.4844 31 6 2.1873 2.1553 1.1300 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5138 0.8901 34 1 -0.3633 0.5139 -0.8899 35 1 1.8933 -0.5137 -0.8901 36 1 1.8934 -0.5139 0.8899 37 1 2.3162 1.7034 -2.1221 38 1 2.9264 5.4230 -1.4746 39 1 5.7495 5.8560 -6.0164 40 1 8.7237 4.6079 -9.4629 41 1 7.5086 2.0037 -6.6337 42 1 6.4158 1.1599 -4.6158 43 1 3.3003 5.3636 1.3503 44 1 2.9175 4.9075 3.7353 45 1 2.0752 2.7121 4.4576 46 1 1.6079 0.9542 2.8118 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000009422385.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:31 Heat of formation + Delta-G solvation = 29.318786 kcal Electronic energy + Delta-G solvation = -32182.549171 eV Core-core repulsion = 27777.248491 eV Total energy + Delta-G solvation = -4405.300680 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 375.130 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.92902 -41.41241 -39.05550 -37.82919 -37.29529 -36.17423 -34.64630 -32.62042 -32.26907 -30.95942 -29.99466 -29.68266 -29.32840 -27.86357 -25.84116 -24.75563 -23.72111 -22.80215 -22.47973 -21.39857 -21.24114 -20.49159 -19.34888 -18.55093 -17.60518 -17.15732 -16.98944 -16.49704 -15.86206 -15.76729 -15.62876 -15.26203 -14.83625 -14.80489 -14.61644 -14.18054 -14.04554 -14.00830 -13.85960 -13.76022 -13.32543 -13.30414 -13.07672 -13.04920 -12.88593 -12.70246 -12.38023 -12.33091 -11.88978 -11.62680 -11.50586 -11.36216 -11.26710 -11.05917 -10.90469 -10.71999 -10.42004 -10.05660 -9.83016 -9.30490 -9.12004 -9.03241 -8.31306 -8.13026 -7.65565 -7.27643 -7.10347 -4.36196 0.35695 1.04114 1.46926 1.80754 2.05603 2.54255 2.64994 3.08285 3.12816 3.15560 3.33112 3.36133 3.78521 3.88713 4.27792 4.30539 4.34533 4.44987 4.61733 4.66075 4.72333 4.80437 4.85957 4.89174 4.93013 5.05154 5.14537 5.23630 5.25713 5.30597 5.37100 5.47805 5.52638 5.62538 5.64271 5.72512 5.75763 5.84042 5.97849 6.09743 6.11884 6.29752 6.40709 6.45763 6.58483 6.62674 6.67920 6.82567 6.88225 7.02785 7.09776 7.12610 7.28381 7.56614 7.83974 8.04669 8.53249 9.17470 10.32200 Molecular weight = 375.13amu Principal moments of inertia in cm(-1) A = 0.017302 B = 0.001886 C = 0.001770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.941860 B =14845.055142 C =15816.564052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.102 3.898 3 N -0.469 5.469 4 C 0.140 3.860 5 C -0.179 4.179 6 C 0.013 3.987 7 C -0.047 4.047 8 O -0.223 6.223 9 C 0.182 3.818 10 C -0.253 4.253 11 C 0.204 3.796 12 O -0.171 6.171 13 C -0.469 4.469 14 H 0.095 0.905 15 C 0.016 3.984 16 N -0.858 5.858 17 Si 1.096 2.904 18 H -0.270 1.270 19 H -0.277 1.277 20 H -0.277 1.277 21 C -0.219 4.219 22 C 0.027 3.973 23 C -0.365 4.365 24 C 0.412 3.588 25 O -0.460 6.460 26 C -0.073 4.073 27 C -0.077 4.077 28 C -0.142 4.142 29 C -0.109 4.109 30 C -0.123 4.123 31 C 0.088 3.912 32 H 0.074 0.926 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.094 0.906 36 H 0.087 0.913 37 H 0.171 0.829 38 H 0.139 0.861 39 H 0.143 0.857 40 H 0.286 0.714 41 H 0.128 0.872 42 H 0.124 0.876 43 H 0.123 0.877 44 H 0.122 0.878 45 H 0.123 0.877 46 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.732 -6.877 20.391 26.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.019 4.019 3 N -0.150 5.150 4 C 0.010 3.990 5 C -0.185 4.185 6 C -0.007 4.007 7 C -0.092 4.092 8 O -0.132 6.132 9 C 0.137 3.863 10 C -0.273 4.273 11 C 0.146 3.854 12 O -0.071 6.071 13 C -0.544 4.544 14 H 0.112 0.888 15 C -0.192 4.192 16 N -0.487 5.487 17 Si 0.919 3.081 18 H -0.195 1.195 19 H -0.203 1.203 20 H -0.203 1.203 21 C -0.238 4.238 22 C 0.008 3.992 23 C -0.368 4.368 24 C 0.299 3.701 25 O -0.343 6.343 26 C -0.077 4.077 27 C -0.096 4.096 28 C -0.161 4.161 29 C -0.128 4.128 30 C -0.143 4.143 31 C -0.016 4.016 32 H 0.093 0.907 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.112 0.888 36 H 0.106 0.894 37 H 0.189 0.811 38 H 0.157 0.843 39 H 0.160 0.840 40 H 0.097 0.903 41 H 0.146 0.854 42 H 0.142 0.858 43 H 0.141 0.859 44 H 0.140 0.860 45 H 0.141 0.859 46 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -14.280 -6.392 19.388 24.913 hybrid contribution -0.438 -1.166 0.973 1.581 sum -14.718 -7.558 20.361 26.236 Atomic orbital electron populations 1.22200 0.94483 1.03001 1.03239 1.21833 0.95284 0.80172 1.04639 1.43773 1.54584 1.11973 1.04672 1.22415 0.95321 0.90162 0.91147 1.18589 1.14728 0.94423 0.90800 1.20479 0.92409 0.98328 0.89520 1.20669 1.02549 0.91870 0.94070 1.84302 1.58706 1.37602 1.32563 1.19192 0.87969 0.90007 0.89149 1.19844 1.07503 1.02854 0.97052 1.18887 0.89614 0.92057 0.84868 1.83643 1.61745 1.27862 1.33836 1.22513 1.32616 0.81246 1.18012 0.88791 1.26798 0.92757 1.08237 0.91435 1.70569 1.32062 1.09372 1.36697 0.83101 0.77297 0.70293 0.77457 1.19477 1.20262 1.20252 1.19890 1.08779 0.94429 1.00694 1.19799 0.90514 0.97742 0.91142 1.20538 1.14999 0.96924 1.04299 1.19178 0.79829 0.87248 0.83857 1.90655 1.60076 1.32646 1.50878 1.18923 1.03009 0.93705 0.92049 1.20483 0.99057 0.98078 0.91935 1.20881 1.02509 0.97360 0.95385 1.20735 1.00217 0.93198 0.98659 1.19998 1.05089 1.00035 0.89227 1.18196 1.03925 0.91201 0.88282 0.90663 0.91865 0.91759 0.88756 0.89413 0.81140 0.84342 0.83977 0.90319 0.85407 0.85836 0.85919 0.86013 0.85938 0.86571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.03 10.24 37.16 0.38 -0.65 16 2 C 0.10 0.77 6.66 -4.04 -0.03 0.74 16 3 N -0.47 -5.25 2.75 -113.74 -0.31 -5.57 16 4 C 0.14 1.81 8.61 -16.04 -0.14 1.68 16 5 C -0.18 -2.49 5.54 -103.06 -0.57 -3.06 16 6 C 0.01 0.18 10.23 -37.12 -0.38 -0.20 16 7 C -0.05 -0.79 6.87 -38.85 -0.27 -1.06 16 8 O -0.22 -4.19 10.59 0.51 0.01 -4.19 16 9 C 0.18 3.71 7.33 -38.53 -0.28 3.43 16 10 C -0.25 -5.50 9.18 -39.21 -0.36 -5.86 16 11 C 0.20 4.65 6.65 -38.99 -0.26 4.39 16 12 O -0.17 -4.42 9.14 0.61 0.01 -4.42 16 13 C -0.47 -12.21 9.48 30.91 0.29 -11.92 16 14 H 0.09 2.30 5.17 -52.49 -0.27 2.03 16 15 C 0.02 0.42 5.49 -17.51 -0.10 0.32 16 16 N -0.86 -23.73 13.70 55.48 0.76 -22.97 16 17 Si 1.10 21.91 29.92 -169.99 -5.09 16.83 16 18 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 19 H -0.28 -5.21 7.11 56.52 0.40 -4.81 16 20 H -0.28 -5.23 7.11 56.52 0.40 -4.83 16 21 C -0.22 -4.36 9.93 -39.76 -0.39 -4.75 16 22 C 0.03 0.50 10.04 -39.70 -0.40 0.10 16 23 C -0.36 -7.16 6.37 -104.88 -0.67 -7.83 16 24 C 0.41 7.58 7.16 -34.45 -0.25 7.33 16 25 O -0.46 -8.53 14.10 4.91 0.07 -8.46 16 26 C -0.07 -0.96 6.35 -104.91 -0.67 -1.62 16 27 C -0.08 -0.87 10.09 -39.37 -0.40 -1.27 16 28 C -0.14 -1.37 10.03 -39.57 -0.40 -1.76 16 29 C -0.11 -0.98 10.01 -39.57 -0.40 -1.38 16 30 C -0.12 -1.21 9.96 -39.41 -0.39 -1.60 16 31 C 0.09 1.05 6.78 -83.94 -0.57 0.48 16 32 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.09 0.65 8.11 -51.93 -0.42 0.23 16 36 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.17 2.13 7.19 -52.49 -0.38 1.76 16 38 H 0.14 1.61 8.06 -52.49 -0.42 1.19 16 39 H 0.14 3.08 5.59 -52.49 -0.29 2.78 16 40 H 0.29 8.05 7.97 -40.82 -0.33 7.72 16 41 H 0.13 2.32 8.06 -52.48 -0.42 1.89 16 42 H 0.12 1.96 8.06 -52.48 -0.42 1.54 16 43 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 44 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 45 H 0.12 0.79 8.06 -52.48 -0.42 0.36 16 46 H 0.12 0.88 8.06 -52.48 -0.42 0.45 16 LS Contribution 397.52 15.07 5.99 5.99 Total: -1.00 -30.75 397.52 -9.94 -40.68 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: -5.14 Total: 6.60 kcal Atomic # 6 Polarization: -18.27 SS G_CDS: -6.23 Total: -24.50 kcal Atomic # 7 Polarization: -28.99 SS G_CDS: 0.45 Total: -28.54 kcal Atomic # 8 Polarization: -17.14 SS G_CDS: 0.08 Total: -17.06 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.09 Total: 16.83 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -30.75 -9.94 -40.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000009422385.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.003 kcal (2) G-P(sol) polarization free energy of solvation -30.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.684 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds