Wall clock time and date at job start Tue Mar 31 2020 06:42:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35821 * 117.00079 * 2 1 4 4 C 1.38888 * 119.93255 * 179.97438 * 3 2 1 5 5 C 1.37845 * 120.07276 * 179.97438 * 4 3 2 6 6 C 1.39483 * 119.92783 * 0.02562 * 5 4 3 7 7 C 1.48194 * 120.06954 * 179.97438 * 6 5 4 8 8 C 1.40379 * 118.85568 * 179.97438 * 7 6 5 9 9 C 1.38710 * 119.39796 * 180.02562 * 8 7 6 10 10 C 1.47911 * 121.33359 * 179.97438 * 9 8 7 11 11 O 1.21541 * 119.99904 * 130.98045 * 10 9 8 12 12 N 1.34781 * 119.99901 * 310.97747 * 10 9 8 13 13 C 1.46490 * 120.00261 * 4.48309 * 12 10 9 14 14 C 1.46507 * 119.99717 * 184.48486 * 12 10 9 15 15 C 1.50701 * 109.46976 * 90.00125 * 14 12 10 16 16 H 1.08002 * 120.00067 * 359.97438 * 15 14 12 17 17 C 1.37878 * 119.99543 * 180.02562 * 15 14 12 18 18 N 1.31523 * 119.99737 * 179.97438 * 17 15 14 19 19 Si 1.86794 * 120.00325 * 359.97438 * 17 15 14 20 20 H 1.48504 * 109.47098 * 90.00233 * 19 17 15 21 21 H 1.48500 * 109.47152 * 209.99938 * 19 17 15 22 22 H 1.48496 * 109.47332 * 330.00434 * 19 17 15 23 23 C 1.46323 * 117.33203 * 0.02562 * 9 8 7 24 24 C 1.39916 * 121.49682 * 179.97438 * 23 9 8 25 25 C 1.36342 * 119.59996 * 179.97438 * 24 23 9 26 26 C 1.39319 * 120.82499 * 359.97438 * 25 24 23 27 27 C 1.36098 * 121.08264 * 0.02562 * 26 25 24 28 28 C 1.40729 * 119.72314 * 359.97438 * 27 26 25 29 29 N 1.31644 * 118.85959 * 359.97438 * 7 6 5 30 30 C 1.39474 * 119.85934 * 0.24757 * 6 5 4 31 31 C 1.37854 * 119.92873 * 359.46922 * 30 6 5 32 32 H 1.09001 * 109.47112 * 299.99545 * 1 2 3 33 33 H 1.08993 * 109.47348 * 59.99726 * 1 2 3 34 34 H 1.09009 * 109.46782 * 180.02562 * 1 2 3 35 35 H 1.08001 * 119.96475 * 359.97438 * 4 3 2 36 36 H 1.08004 * 120.03754 * 180.02562 * 5 4 3 37 37 H 1.07996 * 120.30171 * 0.02562 * 8 7 6 38 38 H 1.08999 * 109.47439 * 93.03233 * 13 12 10 39 39 H 1.09007 * 109.47469 * 213.03225 * 13 12 10 40 40 H 1.09005 * 109.47556 * 333.03600 * 13 12 10 41 41 H 1.09001 * 109.47065 * 209.99676 * 14 12 10 42 42 H 1.08994 * 109.47176 * 330.00201 * 14 12 10 43 43 H 0.96995 * 119.99867 * 179.97438 * 18 17 15 44 44 H 1.07998 * 120.20106 * 0.02562 * 24 23 9 45 45 H 1.08004 * 119.58729 * 180.27741 * 25 24 23 46 46 H 1.07998 * 119.46406 * 180.02562 * 26 25 24 47 47 H 1.07999 * 120.13846 * 179.97438 * 27 26 25 48 48 H 1.07998 * 120.03803 * 179.75032 * 30 6 5 49 49 H 1.07994 * 119.96413 * 180.25190 * 31 30 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0456 1.2102 0.0000 4 6 3.4326 1.2812 0.0005 5 6 4.0614 2.5079 0.0000 6 6 3.3032 3.6786 -0.0005 7 6 3.9759 4.9990 -0.0005 8 6 3.1880 6.1608 -0.0016 9 6 3.8060 7.4026 -0.0022 10 6 3.0176 8.6541 -0.0039 11 8 3.2771 9.5369 0.7902 12 7 2.0115 8.8156 -0.8861 13 6 1.6347 7.7153 -1.7768 14 6 1.2948 10.0915 -0.9543 15 6 1.9751 10.9973 -1.9481 16 1 2.8537 10.6568 -2.4759 17 6 1.4764 12.2611 -2.1829 18 7 2.0705 13.0519 -3.0499 19 14 -0.0428 12.8503 -1.2696 20 1 0.3660 13.5163 -0.0068 21 1 -0.7880 13.8141 -2.1187 22 1 -0.9140 11.6891 -0.9572 23 6 5.2691 7.4250 -0.0022 24 6 5.9817 8.6290 -0.0032 25 6 7.3449 8.6047 -0.0026 26 6 8.0374 7.3958 -0.0004 27 6 7.3752 6.2068 0.0007 28 6 5.9680 6.1918 0.0001 29 7 5.2917 5.0417 0.0005 30 6 1.9104 3.6039 0.0047 31 6 1.2876 2.3740 -0.0007 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8899 34 1 -0.3633 -1.0278 0.0005 35 1 4.0192 0.3744 0.0014 36 1 5.1401 2.5624 0.0000 37 1 2.1105 6.0884 -0.0020 38 1 0.8335 7.1351 -1.3188 39 1 1.2916 8.1198 -2.7291 40 1 2.4984 7.0720 -1.9453 41 1 0.2664 9.9142 -1.2690 42 1 1.2979 10.5630 0.0284 43 1 1.7194 13.9408 -3.2153 44 1 5.4552 9.5720 -0.0037 45 1 7.8949 9.5343 0.0011 46 1 9.1173 7.4022 0.0004 47 1 7.9273 5.2786 0.0019 48 1 1.3205 4.5085 0.0084 49 1 0.2093 2.3155 -0.0008 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000009576565.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:05 Heat of formation + Delta-G solvation = 25.382283 kcal Electronic energy + Delta-G solvation = -33192.138956 eV Core-core repulsion = 28857.074759 eV Total energy + Delta-G solvation = -4335.064197 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 376.157 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.01487 -40.28964 -38.95043 -38.15092 -36.62496 -35.14343 -33.45526 -32.48567 -31.97267 -31.33240 -30.21690 -29.09914 -28.48917 -27.59535 -26.37155 -24.73324 -24.07053 -23.13783 -22.43152 -21.89195 -21.45994 -19.09085 -18.50506 -18.14549 -17.53223 -17.02059 -16.85571 -16.13169 -16.09612 -16.01542 -15.42606 -15.25413 -15.03083 -14.58125 -14.40457 -14.30191 -14.11219 -13.95100 -13.84185 -13.57935 -13.24794 -13.07447 -13.05205 -12.53509 -12.46035 -12.38241 -12.18024 -12.13676 -11.98650 -11.62423 -11.54239 -11.33863 -11.22730 -11.09028 -11.02546 -10.62600 -10.38297 -10.17961 -9.92516 -9.62080 -9.30340 -9.14534 -9.12786 -8.66606 -8.37287 -7.93004 -7.85871 -6.16246 -4.16479 0.05837 0.60590 1.10141 1.33118 1.84171 2.84227 2.91119 3.12296 3.23773 3.29693 3.31634 3.57081 3.60947 3.88272 4.17021 4.32466 4.35527 4.50353 4.56292 4.61710 4.69469 4.75690 4.77547 4.82671 5.03280 5.04418 5.08690 5.10678 5.17390 5.22214 5.28085 5.40064 5.44612 5.50222 5.58463 5.67152 5.72986 5.76512 5.88198 6.00340 6.06274 6.07218 6.10376 6.28846 6.36143 6.43868 6.49981 6.54371 6.59999 6.81337 6.85883 7.03233 7.12620 7.49966 7.84504 7.98209 8.35732 8.65730 8.86600 9.42741 10.96789 Molecular weight = 376.16amu Principal moments of inertia in cm(-1) A = 0.008049 B = 0.002740 C = 0.002115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3478.046115 B =10215.728280 C =13237.010554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.317 6.317 3 C 0.137 3.863 4 C -0.158 4.158 5 C -0.036 4.036 6 C -0.087 4.087 7 C 0.208 3.792 8 C -0.146 4.146 9 C -0.041 4.041 10 C 0.551 3.449 11 O -0.524 6.524 12 N -0.583 5.583 13 C 0.074 3.926 14 C 0.215 3.785 15 C -0.534 4.534 16 H 0.075 0.925 17 C 0.075 3.925 18 N -0.894 5.894 19 Si 0.876 3.124 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.266 1.266 23 C -0.074 4.074 24 C -0.077 4.077 25 C -0.120 4.120 26 C -0.096 4.096 27 C -0.101 4.101 28 C 0.135 3.865 29 N -0.469 5.469 30 C -0.056 4.056 31 C -0.211 4.211 32 H 0.057 0.943 33 H 0.058 0.942 34 H 0.100 0.900 35 H 0.134 0.866 36 H 0.144 0.856 37 H 0.145 0.855 38 H 0.050 0.950 39 H 0.080 0.920 40 H 0.065 0.935 41 H 0.035 0.965 42 H 0.041 0.959 43 H 0.266 0.734 44 H 0.144 0.856 45 H 0.130 0.870 46 H 0.129 0.871 47 H 0.135 0.865 48 H 0.132 0.868 49 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.852 -24.540 5.535 25.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.230 6.230 3 C 0.091 3.909 4 C -0.177 4.177 5 C -0.055 4.055 6 C -0.088 4.088 7 C 0.056 3.944 8 C -0.167 4.167 9 C -0.052 4.052 10 C 0.337 3.663 11 O -0.401 6.401 12 N -0.314 5.314 13 C -0.070 4.070 14 C 0.095 3.905 15 C -0.572 4.572 16 H 0.093 0.907 17 C -0.128 4.128 18 N -0.532 5.532 19 Si 0.703 3.297 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.190 1.190 23 C -0.077 4.077 24 C -0.096 4.096 25 C -0.138 4.138 26 C -0.116 4.116 27 C -0.120 4.120 28 C 0.014 3.986 29 N -0.177 5.177 30 C -0.075 4.075 31 C -0.229 4.229 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.118 0.882 35 H 0.152 0.848 36 H 0.161 0.839 37 H 0.163 0.837 38 H 0.068 0.932 39 H 0.099 0.901 40 H 0.084 0.916 41 H 0.053 0.947 42 H 0.059 0.941 43 H 0.076 0.924 44 H 0.162 0.838 45 H 0.148 0.852 46 H 0.147 0.853 47 H 0.153 0.847 48 H 0.150 0.850 49 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 2.619 -24.735 5.851 25.552 hybrid contribution -1.590 1.405 0.238 2.135 sum 1.029 -23.330 6.088 24.133 Atomic orbital electron populations 1.23095 0.78181 1.04050 1.01627 1.86055 1.21589 1.27034 1.88334 1.19226 0.92441 0.84133 0.95057 1.20419 0.91205 0.98751 1.07302 1.21150 1.00845 0.89971 0.93485 1.18425 0.92535 0.91044 1.06797 1.19551 0.88767 0.91849 0.94272 1.22327 1.01450 0.91229 1.01649 1.21642 0.92953 0.94332 0.96261 1.17919 0.80628 0.85647 0.82133 1.90777 1.67872 1.42270 1.39154 1.47786 1.33281 1.15430 1.34889 1.21930 0.99922 0.89821 0.95342 1.19774 0.91842 0.80276 0.98653 1.21284 1.14293 0.98615 1.23036 0.90659 1.24845 0.97000 0.96213 0.94783 1.69893 1.40373 1.08748 1.34190 0.86856 0.83329 0.79271 0.80283 1.19806 1.20965 1.19025 1.19594 0.91528 0.94865 1.01693 1.21269 0.94530 0.98022 0.95731 1.21024 0.94219 0.98439 1.00111 1.20926 1.00315 0.92062 0.98306 1.20713 0.91110 0.98860 1.01306 1.18622 0.94059 0.86963 0.98954 1.67423 1.08333 1.28826 1.13141 1.21074 0.93284 0.97609 0.95547 1.21135 1.00218 0.91914 1.09681 0.92459 0.92386 0.88197 0.84843 0.83857 0.83737 0.93175 0.90145 0.91624 0.94739 0.94119 0.92434 0.83831 0.85219 0.85277 0.84705 0.85028 0.84973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 9.81 101.05 0.99 1.12 16 2 O -0.32 -2.80 10.49 -19.18 -0.20 -3.00 16 3 C 0.14 1.31 6.69 -39.10 -0.26 1.05 16 4 C -0.16 -1.52 9.97 -39.48 -0.39 -1.91 16 5 C -0.04 -0.37 9.55 -39.26 -0.37 -0.75 16 6 C -0.09 -1.00 5.88 -104.88 -0.62 -1.62 16 7 C 0.21 2.83 6.73 -83.05 -0.56 2.27 16 8 C -0.15 -2.06 7.06 -38.60 -0.27 -2.33 16 9 C -0.04 -0.71 5.08 -102.51 -0.52 -1.23 16 10 C 0.55 11.40 6.79 -12.30 -0.08 11.31 16 11 O -0.52 -12.63 15.17 5.33 0.08 -12.55 16 12 N -0.58 -11.82 2.86 -184.05 -0.53 -12.35 16 13 C 0.07 1.13 9.13 59.84 0.55 1.67 16 14 C 0.21 5.08 4.28 -5.19 -0.02 5.06 16 15 C -0.53 -14.93 9.94 -34.44 -0.34 -15.27 16 16 H 0.08 2.32 8.06 -52.49 -0.42 1.90 16 17 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 18 N -0.89 -26.99 13.96 55.43 0.77 -26.22 16 19 Si 0.88 21.00 27.47 -169.99 -4.67 16.33 16 20 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.27 -5.95 6.54 56.52 0.37 -5.58 16 23 C -0.07 -1.26 5.90 -104.68 -0.62 -1.88 16 24 C -0.08 -1.30 9.30 -39.64 -0.37 -1.67 16 25 C -0.12 -1.62 9.96 -39.86 -0.40 -2.01 16 26 C -0.10 -1.11 9.94 -39.95 -0.40 -1.51 16 27 C -0.10 -1.27 9.99 -39.41 -0.39 -1.66 16 28 C 0.13 2.05 6.62 -84.90 -0.56 1.49 16 29 N -0.47 -6.80 9.22 -7.62 -0.07 -6.87 16 30 C -0.06 -0.54 9.39 -39.26 -0.37 -0.91 16 31 C -0.21 -1.85 9.02 -39.48 -0.36 -2.20 16 32 H 0.06 0.25 7.66 -51.93 -0.40 -0.15 16 33 H 0.06 0.25 7.65 -51.93 -0.40 -0.14 16 34 H 0.10 0.33 8.14 -51.92 -0.42 -0.10 16 35 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 36 H 0.14 1.45 7.49 -52.48 -0.39 1.06 16 37 H 0.15 1.69 4.71 -52.49 -0.25 1.44 16 38 H 0.05 0.60 7.63 -51.93 -0.40 0.20 16 39 H 0.08 1.26 8.10 -51.93 -0.42 0.84 16 40 H 0.07 0.93 5.68 -51.93 -0.29 0.64 16 41 H 0.03 0.77 7.13 -51.93 -0.37 0.40 16 42 H 0.04 1.02 6.79 -51.93 -0.35 0.67 16 43 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 44 H 0.14 2.78 6.48 -52.49 -0.34 2.44 16 45 H 0.13 1.46 8.06 -52.48 -0.42 1.04 16 46 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 47 H 0.14 1.37 8.06 -52.49 -0.42 0.95 16 48 H 0.13 1.08 6.09 -52.49 -0.32 0.76 16 49 H 0.13 0.85 6.28 -52.49 -0.33 0.52 16 LS Contribution 404.83 15.07 6.10 6.10 Total: -1.00 -34.76 404.83 -9.94 -44.70 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -5.96 Total: 2.83 kcal Atomic # 6 Polarization: -3.49 SS G_CDS: -5.47 Total: -8.96 kcal Atomic # 7 Polarization: -45.62 SS G_CDS: 0.18 Total: -45.44 kcal Atomic # 8 Polarization: -15.44 SS G_CDS: -0.12 Total: -15.56 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -4.67 Total: 16.33 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -34.76 -9.94 -44.70 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000009576565.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.082 kcal (2) G-P(sol) polarization free energy of solvation -34.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds