Wall clock time and date at job start Tue Mar 31 2020 05:56:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.76207 * 102.99967 * 2 1 4 4 C 1.38996 * 120.08001 * 0.02562 * 3 2 1 5 5 C 1.38051 * 119.91832 * 179.97438 * 4 3 2 6 6 C 1.38325 * 120.08239 * 359.97438 * 5 4 3 7 7 S 1.76206 * 119.92099 * 180.02562 * 6 5 4 8 8 O 1.42102 * 106.39950 * 203.53864 * 7 6 5 9 9 O 1.42101 * 106.39925 * 336.45448 * 7 6 5 10 10 N 1.65598 * 107.21688 * 89.99389 * 7 6 5 11 11 C 1.46498 * 120.00178 * 65.00569 * 10 7 6 12 12 C 1.50692 * 109.47364 * 164.99445 * 11 10 7 13 13 O 1.21219 * 119.99845 * 359.97438 * 12 11 10 14 14 O 1.34307 * 120.00376 * 179.97438 * 12 11 10 15 15 C 1.34918 * 117.00500 * 180.02562 * 14 12 11 16 16 H 1.07997 * 119.99737 * 359.97438 * 15 14 12 17 17 C 1.38754 * 120.00208 * 180.02562 * 15 14 12 18 18 N 1.31438 * 119.99953 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00039 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47134 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47427 * 119.99778 * 19 17 15 22 22 H 1.48501 * 109.47081 * 239.99908 * 19 17 15 23 23 C 1.38276 * 120.16057 * 0.02562 * 6 5 4 24 24 C 1.38104 * 120.07944 * 359.72398 * 23 6 5 25 25 N 1.48012 * 120.04351 * 180.27667 * 24 23 6 26 26 O 1.21796 * 119.99629 * 0.25462 * 25 24 23 27 27 O 1.21801 * 119.99851 * 180.25763 * 25 24 23 28 28 H 1.09001 * 109.47190 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47089 * 299.99885 * 1 2 3 30 30 H 1.09004 * 109.47568 * 59.99895 * 1 2 3 31 31 H 1.08009 * 120.03806 * 0.02582 * 4 3 2 32 32 H 1.08001 * 119.95805 * 179.97438 * 5 4 3 33 33 H 0.97001 * 119.99906 * 244.99540 * 10 7 6 34 34 H 1.08998 * 109.46577 * 284.99582 * 11 10 7 35 35 H 1.09005 * 109.47033 * 44.99262 * 11 10 7 36 36 H 0.97003 * 120.00466 * 179.97438 * 18 17 15 37 37 H 1.08004 * 119.96168 * 180.02562 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7169 0.0000 4 6 1.1951 2.6663 0.0005 5 6 1.5095 4.0105 0.0011 6 6 2.8328 4.4131 0.0016 7 16 3.2292 6.1300 0.0030 8 8 4.5373 6.2402 -0.5411 9 8 2.1019 6.8025 -0.5413 10 7 3.3390 6.6065 1.5851 11 6 4.3928 6.0595 2.4434 12 6 4.5124 6.8991 3.6890 13 8 3.7893 7.8595 3.8443 14 8 5.4201 6.5832 4.6272 15 6 5.4748 7.3754 5.7180 16 1 4.8069 8.2195 5.8063 17 6 6.3899 7.1064 6.7256 18 7 7.2032 6.0795 6.6178 19 14 6.4662 8.2037 8.2355 20 1 5.4535 9.2831 8.1145 21 1 6.1863 7.3956 9.4495 22 1 7.8197 8.8052 8.3424 23 6 3.8455 3.4715 0.0011 24 6 3.5386 2.1250 0.0058 25 7 4.6231 1.1178 0.0114 26 8 5.7871 1.4764 0.0165 27 8 4.3516 -0.0695 0.0108 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 0.1616 2.3526 0.0014 32 1 0.7211 4.7487 0.0011 33 1 2.7057 7.2478 1.9436 34 1 4.1420 5.0350 2.7184 35 1 5.3410 6.0697 1.9059 36 1 7.8432 5.8916 7.3221 37 1 4.8776 3.7895 0.0019 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000009592456.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:10 Heat of formation + Delta-G solvation = -111.581775 kcal Electronic energy + Delta-G solvation = -29298.287393 eV Core-core repulsion = 24684.839514 eV Total energy + Delta-G solvation = -4613.447879 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 376.037 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.44285 -39.85070 -39.24073 -37.53910 -36.80765 -36.14042 -35.93706 -34.30136 -32.70360 -32.57048 -32.27642 -29.52657 -27.69147 -26.99265 -25.03716 -24.47245 -23.12581 -20.62568 -20.50159 -19.48088 -18.93290 -18.35028 -17.96366 -17.85290 -17.79060 -17.31939 -16.67394 -16.28893 -16.00211 -15.53551 -15.26410 -15.22575 -14.91119 -14.61596 -14.45546 -13.94772 -13.85340 -13.74690 -13.26224 -13.16954 -12.90343 -12.52767 -12.35771 -12.24845 -12.20999 -12.03515 -11.66625 -11.63089 -11.47721 -11.36539 -11.28955 -11.05125 -10.58602 -10.47528 -10.45183 -10.26784 -9.96114 -9.77512 -9.28922 -8.69929 -8.37765 -6.52449 -4.21516 -0.67036 -0.18516 0.09067 0.52462 0.91408 1.06751 1.60467 2.28539 2.73889 2.99203 3.13792 3.20963 3.31573 3.42801 3.56499 3.78570 3.91445 4.06585 4.26587 4.34055 4.41678 4.43196 4.47995 4.61381 4.79378 4.97194 5.00116 5.05765 5.10625 5.16895 5.46706 5.55580 5.59643 6.09052 6.51931 6.90653 7.28129 7.39884 7.80712 8.51075 8.95398 9.65143 10.64618 Molecular weight = 376.04amu Principal moments of inertia in cm(-1) A = 0.009970 B = 0.002641 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2807.716419 B =10601.402415 C =11852.823667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 S 0.041 5.959 3 C -0.002 4.002 4 C -0.161 4.161 5 C 0.053 3.947 6 C -0.695 4.695 7 S 2.707 3.293 8 O -0.941 6.941 9 O -0.947 6.947 10 N -1.099 6.099 11 C 0.130 3.870 12 C 0.393 3.607 13 O -0.550 6.550 14 O -0.206 6.206 15 C -0.385 4.385 16 H 0.099 0.901 17 C 0.044 3.956 18 N -0.858 5.858 19 Si 0.945 3.055 20 H -0.265 1.265 21 H -0.275 1.275 22 H -0.275 1.275 23 C 0.071 3.929 24 C -0.061 4.061 25 N 0.031 4.969 26 O -0.147 6.147 27 O -0.146 6.146 28 H 0.118 0.882 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.156 0.844 32 H 0.164 0.836 33 H 0.431 0.569 34 H 0.093 0.907 35 H 0.114 0.886 36 H 0.272 0.728 37 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.482 -11.552 -14.600 23.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.372 4.372 2 S 0.291 5.709 3 C -0.119 4.119 4 C -0.187 4.187 5 C 0.031 3.969 6 C -0.783 4.783 7 S 2.792 3.208 8 O -0.931 6.931 9 O -0.938 6.938 10 N -0.865 5.865 11 C 0.003 3.997 12 C 0.238 3.762 13 O -0.448 6.448 14 O -0.112 6.112 15 C -0.461 4.461 16 H 0.117 0.883 17 C -0.161 4.161 18 N -0.494 5.494 19 Si 0.770 3.230 20 H -0.189 1.189 21 H -0.201 1.201 22 H -0.200 1.200 23 C 0.050 3.950 24 C -0.153 4.153 25 N 0.547 4.453 26 O -0.363 6.363 27 O -0.358 6.358 28 H 0.136 0.864 29 H 0.110 0.890 30 H 0.108 0.892 31 H 0.173 0.827 32 H 0.181 0.819 33 H 0.270 0.730 34 H 0.111 0.889 35 H 0.132 0.868 36 H 0.082 0.918 37 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -14.127 -11.796 -15.197 23.868 hybrid contribution -0.987 0.822 1.248 1.791 sum -15.114 -10.974 -13.949 23.312 Atomic orbital electron populations 1.24279 0.98593 1.08143 1.06215 1.87268 1.02670 0.95828 1.85148 1.22258 0.93896 1.01775 0.94014 1.21330 0.98729 0.92358 1.06287 1.21247 0.94990 0.96621 0.84051 1.31414 0.99977 1.26867 1.20032 1.01773 0.74090 0.72716 0.72219 1.93639 1.38360 1.84996 1.76134 1.93616 1.52632 1.71540 1.75969 1.55233 1.42605 1.58106 1.30517 1.20475 0.91954 0.96741 0.90555 1.22647 0.81962 0.85672 0.85949 1.90555 1.45429 1.29881 1.78891 1.83845 1.48900 1.51496 1.26923 1.21309 1.21104 1.09923 0.93788 0.88342 1.25383 0.94833 0.97120 0.98780 1.69993 1.19413 1.26236 1.33801 0.85581 0.78699 0.79253 0.79513 1.18903 1.20096 1.20013 1.20801 1.01702 0.88949 0.83577 1.20550 0.85992 0.89434 1.19372 1.43397 1.01988 1.01534 0.98341 1.94611 1.02665 1.85838 1.53183 1.94447 1.87952 0.99777 1.53599 0.86382 0.89043 0.89167 0.82652 0.81879 0.72979 0.88872 0.86840 0.91845 0.80543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -0.76 9.15 101.05 0.92 0.17 16 2 S 0.04 0.33 19.39 -107.50 -2.08 -1.75 16 3 C 0.00 -0.02 6.11 -39.04 -0.24 -0.26 16 4 C -0.16 -1.14 9.36 -39.37 -0.37 -1.51 16 5 C 0.05 0.41 9.51 -39.62 -0.38 0.04 16 6 C -0.69 -6.92 5.95 -39.54 -0.24 -7.16 16 7 S 2.71 32.02 5.74 -107.50 -0.62 31.41 16 8 O -0.94 -13.60 16.74 -57.17 -0.96 -14.56 16 9 O -0.95 -12.37 17.27 -57.17 -0.99 -13.36 16 10 N -1.10 -14.67 5.93 -11.66 -0.07 -14.74 16 11 C 0.13 2.05 6.81 -5.20 -0.04 2.01 16 12 C 0.39 8.81 7.97 36.00 0.29 9.10 16 13 O -0.55 -13.37 14.97 -19.06 -0.29 -13.65 16 14 O -0.21 -5.53 9.75 -20.69 -0.20 -5.74 16 15 C -0.39 -10.88 9.65 30.92 0.30 -10.58 16 16 H 0.10 2.79 6.86 -52.49 -0.36 2.43 16 17 C 0.04 1.20 5.49 -17.53 -0.10 1.10 16 18 N -0.86 -24.31 13.67 55.48 0.76 -23.55 16 19 Si 0.95 20.56 29.55 -169.99 -5.02 15.53 16 20 H -0.26 -5.67 7.11 56.52 0.40 -5.27 16 21 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 22 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 23 C 0.07 0.78 9.02 -39.62 -0.36 0.43 16 24 C -0.06 -0.71 6.87 -79.74 -0.55 -1.26 16 25 N 0.03 0.43 4.45 34.07 0.15 0.58 16 26 O -0.15 -2.17 18.45 -29.46 -0.54 -2.72 16 27 O -0.15 -1.99 15.81 -29.46 -0.47 -2.46 16 28 H 0.12 0.29 8.14 -51.92 -0.42 -0.13 16 29 H 0.09 0.27 7.75 -51.92 -0.40 -0.13 16 30 H 0.09 0.23 7.75 -51.92 -0.40 -0.17 16 31 H 0.16 0.58 5.88 -52.48 -0.31 0.27 16 32 H 0.16 0.88 7.61 -52.49 -0.40 0.48 16 33 H 0.43 5.83 7.70 -34.47 -0.27 5.56 16 34 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.11 1.64 7.75 -51.93 -0.40 1.23 16 36 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 37 H 0.18 1.85 7.16 -52.48 -0.38 1.48 16 LS Contribution 362.00 15.07 5.46 5.46 Total: -1.00 -36.53 362.00 -8.51 -45.04 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -2.90 Total: 2.44 kcal Atomic # 6 Polarization: -7.18 SS G_CDS: -0.75 Total: -7.93 kcal Atomic # 7 Polarization: -38.56 SS G_CDS: 0.84 Total: -37.71 kcal Atomic # 8 Polarization: -49.04 SS G_CDS: -3.44 Total: -52.48 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.53 kcal Atomic # 16 Polarization: 32.35 SS G_CDS: -2.70 Total: 29.65 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -36.53 -8.51 -45.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000009592456.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.540 kcal (2) G-P(sol) polarization free energy of solvation -36.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds