Wall clock time and date at job start Tue Mar 31 2020 05:18:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35753 * 117.00121 * 2 1 4 4 C 1.38967 * 119.90693 * 180.02562 * 3 2 1 5 5 C 1.37729 * 120.09224 * 180.25546 * 4 3 2 6 6 C 1.39753 * 119.90708 * 359.49940 * 5 4 3 7 7 C 1.47557 * 120.09528 * 180.25700 * 6 5 4 8 8 N 1.37386 * 120.10155 * 306.26074 * 7 6 5 9 9 H 0.97003 * 119.88105 * 0.02562 * 8 7 6 10 10 C 1.37954 * 120.23866 * 179.77248 * 8 7 6 11 11 N 1.31333 * 130.71446 * 180.16891 * 10 8 7 12 12 C 1.35774 * 109.84776 * 180.31216 * 11 10 8 13 13 C 1.39765 * 133.38080 * 180.02562 * 12 11 10 14 14 C 1.37662 * 119.78409 * 179.97438 * 13 12 11 15 15 C 1.38715 * 120.51505 * 359.97438 * 14 13 12 16 16 C 1.37945 * 120.42090 * 0.04497 * 15 14 13 17 17 C 1.38659 * 119.84496 * 359.95500 * 16 15 14 18 18 N 1.36996 * 119.82860 * 0.50919 * 10 8 7 19 19 C 1.34673 * 120.58029 * 359.74509 * 18 10 8 20 20 O 1.21859 * 119.97694 * 180.02562 * 19 18 10 21 21 C 1.36643 * 120.10942 * 126.54196 * 7 6 5 22 22 C 1.50700 * 120.24124 * 359.97438 * 21 7 6 23 23 C 1.50698 * 109.47430 * 95.93632 * 22 21 7 24 24 H 1.08001 * 119.99689 * 359.97438 * 23 22 21 25 25 C 1.37879 * 120.00016 * 180.02562 * 23 22 21 26 26 N 1.31517 * 119.99612 * 179.97438 * 25 23 22 27 27 Si 1.86797 * 120.00086 * 359.97438 * 25 23 22 28 28 H 1.48501 * 109.47168 * 90.00328 * 27 25 23 29 29 H 1.48505 * 109.47043 * 210.00366 * 27 25 23 30 30 H 1.48505 * 109.47264 * 330.00161 * 27 25 23 31 31 C 1.39754 * 119.81166 * 0.47888 * 6 5 4 32 32 C 1.37729 * 119.90642 * 359.77349 * 31 6 5 33 33 H 1.08997 * 109.47068 * 299.99684 * 1 2 3 34 34 H 1.09002 * 109.47377 * 59.99807 * 1 2 3 35 35 H 1.09010 * 109.47258 * 179.97438 * 1 2 3 36 36 H 1.08000 * 119.95397 * 359.97438 * 4 3 2 37 37 H 1.08006 * 120.04914 * 179.72727 * 5 4 3 38 38 H 1.08003 * 120.10305 * 0.02562 * 13 12 11 39 39 H 1.08003 * 119.73988 * 179.97438 * 14 13 12 40 40 H 1.08001 * 119.78844 * 180.02562 * 15 14 13 41 41 H 1.07999 * 120.07599 * 179.97438 * 16 15 14 42 42 H 1.09005 * 109.47321 * 215.93837 * 22 21 7 43 43 H 1.09002 * 109.46925 * 335.92987 * 22 21 7 44 44 H 0.97000 * 119.99651 * 179.97438 * 26 25 23 45 45 H 1.08007 * 120.04783 * 179.79805 * 31 6 5 46 46 H 1.07997 * 119.95517 * 179.97438 * 32 31 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2096 0.0000 4 6 3.4332 1.2800 -0.0005 5 6 4.0625 2.5051 0.0048 6 6 3.3033 3.6784 0.0001 7 6 3.9732 4.9932 0.0001 8 7 4.9091 5.2897 0.9611 9 1 5.1294 4.6328 1.6400 10 6 5.5406 6.5162 0.9609 11 7 6.4541 7.0095 1.7652 12 6 6.7765 8.2705 1.3783 13 6 7.6689 9.2270 1.8704 14 6 7.7753 10.4487 1.2450 15 6 7.0037 10.7383 0.1292 16 6 6.1179 9.8054 -0.3687 17 6 5.9977 8.5696 0.2486 18 7 5.2248 7.4451 0.0047 19 6 4.3056 7.1701 -0.9404 20 8 4.0336 8.0043 -1.7861 21 6 3.6605 5.9218 -0.9523 22 6 2.6312 5.6095 -2.0078 23 6 1.2928 6.1552 -1.5815 24 1 1.1970 6.6758 -0.6401 25 6 0.1904 5.9890 -2.3927 26 7 -0.9778 6.4649 -2.0203 27 14 0.3560 5.0880 -4.0206 28 1 0.1108 3.6385 -3.8113 29 1 -0.6371 5.6237 -4.9861 30 1 1.7259 5.2857 -4.5588 31 6 1.9078 3.6030 0.0002 32 6 1.2865 2.3738 0.0002 33 1 -0.3633 0.5138 0.8900 34 1 -0.3634 0.5139 -0.8900 35 1 -0.3634 -1.0277 -0.0005 36 1 4.0192 0.3728 -0.0005 37 1 5.1412 2.5590 0.0088 38 1 8.2737 9.0079 2.7380 39 1 8.4648 11.1874 1.6261 40 1 7.0969 11.7004 -0.3526 41 1 5.5196 10.0369 -1.2376 42 1 2.9271 6.0688 -2.9511 43 1 2.5590 4.5295 -2.1366 44 1 -1.7532 6.3483 -2.5912 45 1 1.3173 4.5074 -0.0001 46 1 0.2082 2.3146 0.0007 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000009926748.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:31 Heat of formation + Delta-G solvation = 67.177788 kcal Electronic energy + Delta-G solvation = -33685.242814 eV Core-core repulsion = 29313.876574 eV Total energy + Delta-G solvation = -4371.366240 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 375.137 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -42.94747 -40.27471 -39.45724 -38.16673 -37.44971 -36.14246 -33.80689 -33.47917 -31.99462 -30.95258 -30.67670 -30.01917 -28.78996 -27.65332 -27.23320 -24.63785 -23.65069 -22.56567 -22.33882 -22.19007 -21.60515 -20.80066 -18.51961 -18.23768 -18.05466 -17.56690 -17.06340 -16.68769 -16.44484 -16.11853 -15.85482 -15.76656 -14.91000 -14.72017 -14.44671 -14.29707 -14.00658 -13.80561 -13.73565 -13.68708 -13.37073 -13.05136 -12.92992 -12.64228 -12.29563 -12.13374 -12.04256 -11.94753 -11.77622 -11.54197 -11.44884 -11.05313 -10.74747 -10.67786 -10.58107 -10.50151 -10.14827 -10.08505 -9.86173 -9.51089 -8.91232 -8.69523 -8.64827 -8.40648 -8.02437 -7.36953 -6.17892 -4.15930 0.77532 0.89481 1.31343 1.49963 1.72213 2.13865 2.43486 2.71085 3.20609 3.21438 3.31012 3.36615 3.67016 3.85729 3.90924 4.13055 4.33756 4.46127 4.76099 4.87692 4.92739 4.98160 5.05270 5.07713 5.11761 5.13709 5.17411 5.30405 5.37013 5.42290 5.47677 5.52075 5.61350 5.68758 5.79315 5.89381 6.14781 6.20569 6.20934 6.33380 6.42295 6.49841 6.53598 6.58058 6.72617 6.74450 6.84543 6.92312 7.00574 7.13910 7.31023 7.36338 7.56898 7.63399 8.09348 8.36940 8.83567 9.42102 10.94047 Molecular weight = 375.14amu Principal moments of inertia in cm(-1) A = 0.009849 B = 0.003324 C = 0.002611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2842.115679 B = 8422.582131 C =10722.599189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.319 6.319 3 C 0.142 3.858 4 C -0.165 4.165 5 C -0.058 4.058 6 C -0.111 4.111 7 C 0.224 3.776 8 N -0.592 5.592 9 H 0.434 0.566 10 C 0.520 3.480 11 N -0.519 5.519 12 C 0.091 3.909 13 C -0.086 4.086 14 C -0.110 4.110 15 C -0.122 4.122 16 C -0.077 4.077 17 C 0.042 3.958 18 N -0.472 5.472 19 C 0.552 3.448 20 O -0.477 6.477 21 C -0.188 4.188 22 C 0.048 3.952 23 C -0.509 4.509 24 H 0.073 0.927 25 C 0.078 3.922 26 N -0.894 5.894 27 Si 0.868 3.132 28 H -0.274 1.274 29 H -0.285 1.285 30 H -0.263 1.263 31 C -0.011 4.011 32 C -0.211 4.211 33 H 0.058 0.942 34 H 0.060 0.940 35 H 0.098 0.902 36 H 0.132 0.868 37 H 0.129 0.871 38 H 0.131 0.869 39 H 0.130 0.870 40 H 0.131 0.869 41 H 0.134 0.866 42 H 0.038 0.962 43 H 0.034 0.966 44 H 0.265 0.735 45 H 0.170 0.830 46 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.343 -6.798 7.477 15.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.232 6.232 3 C 0.097 3.903 4 C -0.184 4.184 5 C -0.077 4.077 6 C -0.112 4.112 7 C 0.120 3.880 8 N -0.217 5.217 9 H 0.274 0.726 10 C 0.166 3.834 11 N -0.249 5.249 12 C -0.025 4.025 13 C -0.107 4.107 14 C -0.130 4.130 15 C -0.142 4.142 16 C -0.097 4.097 17 C -0.060 4.060 18 N -0.184 5.184 19 C 0.350 3.650 20 O -0.348 6.348 21 C -0.198 4.198 22 C 0.010 3.990 23 C -0.547 4.547 24 H 0.091 0.909 25 C -0.125 4.125 26 N -0.532 5.532 27 Si 0.694 3.306 28 H -0.200 1.200 29 H -0.211 1.211 30 H -0.187 1.187 31 C -0.029 4.029 32 C -0.229 4.229 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.116 0.884 36 H 0.149 0.851 37 H 0.147 0.853 38 H 0.149 0.851 39 H 0.148 0.852 40 H 0.149 0.851 41 H 0.152 0.848 42 H 0.056 0.944 43 H 0.052 0.948 44 H 0.075 0.925 45 H 0.187 0.813 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 11.316 -6.793 7.424 15.143 hybrid contribution -0.669 -0.193 -1.282 1.459 sum 10.647 -6.985 6.142 14.138 Atomic orbital electron populations 1.23107 0.78109 1.03785 1.02053 1.85993 1.21682 1.27196 1.88292 1.19318 0.92387 0.84218 0.94407 1.20144 0.91193 0.98168 1.08876 1.20961 0.99359 0.90652 0.96698 1.18122 0.93567 0.88940 1.10612 1.18741 0.87538 0.94243 0.87458 1.40669 1.38141 1.12008 1.30918 0.72595 1.19955 0.92097 0.84209 0.87141 1.70564 1.17026 1.10090 1.27179 1.18853 0.98323 0.91412 0.93939 1.20141 0.98099 0.91647 1.00770 1.20918 0.99817 0.96213 0.96041 1.20896 0.96837 0.99102 0.97340 1.20277 0.99227 0.89908 1.00266 1.18723 0.97211 0.89855 1.00255 1.44652 1.34137 1.13404 1.26249 1.17116 0.78048 0.89552 0.80270 1.90881 1.60272 1.48074 1.35552 1.20671 1.04976 0.90936 1.03265 1.18487 0.91641 0.97132 0.91720 1.20814 0.89875 1.36998 1.06968 0.90930 1.24881 0.95093 0.95104 0.97409 1.69889 0.99862 1.45460 1.37947 0.86944 0.78817 0.80157 0.84644 1.19997 1.21097 1.18693 1.21951 0.93000 0.99607 0.88375 1.21295 1.00652 0.91759 1.09222 0.92311 0.92168 0.88362 0.85052 0.85291 0.85067 0.85169 0.85078 0.84843 0.94364 0.94816 0.92488 0.81288 0.84747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 101.05 0.99 1.22 16 2 O -0.32 -3.98 10.49 -18.97 -0.20 -4.18 16 3 C 0.14 1.93 6.69 -39.04 -0.26 1.67 16 4 C -0.17 -2.01 9.97 -39.50 -0.39 -2.41 16 5 C -0.06 -0.71 9.74 -39.20 -0.38 -1.09 16 6 C -0.11 -1.68 4.63 -104.96 -0.49 -2.16 16 7 C 0.22 3.71 6.29 -82.15 -0.52 3.20 16 8 N -0.59 -8.49 5.43 -9.81 -0.05 -8.54 16 9 H 0.43 4.67 8.81 -40.82 -0.36 4.31 16 10 C 0.52 8.83 8.94 -318.87 -2.85 5.98 16 11 N -0.52 -8.65 11.31 -11.34 -0.13 -8.78 16 12 C 0.09 1.49 7.22 -84.72 -0.61 0.87 16 13 C -0.09 -1.10 10.10 -39.22 -0.40 -1.50 16 14 C -0.11 -1.20 10.01 -39.62 -0.40 -1.60 16 15 C -0.12 -1.48 10.03 -39.51 -0.40 -1.87 16 16 C -0.08 -1.21 9.80 -39.53 -0.39 -1.60 16 17 C 0.04 0.76 6.92 -83.81 -0.58 0.18 16 18 N -0.47 -9.14 2.93 -63.96 -0.19 -9.33 16 19 C 0.55 12.06 7.57 -15.44 -0.12 11.94 16 20 O -0.48 -11.77 16.15 5.05 0.08 -11.69 16 21 C -0.19 -3.88 5.06 -104.34 -0.53 -4.41 16 22 C 0.05 1.12 3.12 -29.04 -0.09 1.03 16 23 C -0.51 -13.41 7.23 -34.44 -0.25 -13.66 16 24 H 0.07 2.11 7.98 -52.49 -0.42 1.69 16 25 C 0.08 2.11 5.47 -17.82 -0.10 2.01 16 26 N -0.89 -25.78 13.96 55.43 0.77 -25.01 16 27 Si 0.87 20.61 27.47 -169.99 -4.67 15.94 16 28 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 29 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 30 H -0.26 -6.19 6.54 56.52 0.37 -5.82 16 31 C -0.01 -0.19 7.79 -39.20 -0.31 -0.49 16 32 C -0.21 -3.13 9.01 -39.50 -0.36 -3.48 16 33 H 0.06 0.51 7.65 -51.93 -0.40 0.11 16 34 H 0.06 0.59 7.65 -51.93 -0.40 0.20 16 35 H 0.10 0.68 8.14 -51.92 -0.42 0.25 16 36 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 37 H 0.13 1.24 8.06 -52.48 -0.42 0.81 16 38 H 0.13 1.36 8.06 -52.48 -0.42 0.94 16 39 H 0.13 0.97 8.06 -52.48 -0.42 0.55 16 40 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 41 H 0.13 2.22 7.54 -52.49 -0.40 1.83 16 42 H 0.04 0.96 6.84 -51.93 -0.36 0.60 16 43 H 0.03 0.74 5.56 -51.93 -0.29 0.45 16 44 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 45 H 0.17 3.35 5.57 -52.48 -0.29 3.06 16 46 H 0.13 1.85 6.28 -52.49 -0.33 1.53 16 LS Contribution 384.51 15.07 5.79 5.79 Total: -1.00 -33.20 384.51 -11.93 -45.13 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -4.94 Total: 6.83 kcal Atomic # 6 Polarization: 2.23 SS G_CDS: -8.41 Total: -6.18 kcal Atomic # 7 Polarization: -52.06 SS G_CDS: 0.40 Total: -51.65 kcal Atomic # 8 Polarization: -15.75 SS G_CDS: -0.12 Total: -15.87 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -4.67 Total: 15.94 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.20 -11.93 -45.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000009926748.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.312 kcal (2) G-P(sol) polarization free energy of solvation -33.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.134 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds