Wall clock time and date at job start Tue Mar 31 2020 05:02:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50702 * 119.99885 * 2 1 4 4 N 1.46505 * 109.46747 * 124.99543 * 3 2 1 5 5 C 1.36933 * 127.17976 * 270.16252 * 4 3 2 6 6 S 1.76201 * 126.36985 * 359.96503 * 5 4 3 7 7 C 1.76198 * 100.00107 * 180.30419 * 6 5 4 8 8 H 1.08006 * 119.99667 * 0.02562 * 7 6 5 9 9 C 1.38524 * 120.00365 * 179.97438 * 7 6 5 10 10 N 1.31723 * 119.99595 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 120.00080 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.46899 * 90.00231 * 11 9 7 13 13 H 1.48494 * 109.47045 * 210.00019 * 11 9 7 14 14 H 1.48498 * 109.47030 * 330.00305 * 11 9 7 15 15 N 1.31551 * 107.25819 * 180.24586 * 5 4 3 16 16 N 1.28509 * 110.09833 * 359.75459 * 15 5 4 17 17 C 1.31786 * 109.95040 * 0.02562 * 16 15 5 18 18 C 1.47008 * 126.47615 * 179.97438 * 17 16 15 19 19 C 1.35737 * 125.33953 * 15.00229 * 18 17 16 20 20 C 1.38574 * 115.23080 * 180.02562 * 19 18 17 21 21 C 1.35024 * 113.92297 * 359.97438 * 20 19 18 22 22 S 1.75713 * 125.33712 * 194.99590 * 18 17 16 23 23 C 1.51505 * 124.65637 * 180.02562 * 21 20 19 24 24 C 1.53142 * 108.71013 * 343.58342 * 23 21 20 25 25 C 1.53151 * 108.96603 * 49.82340 * 24 23 21 26 26 H 1.09000 * 109.49874 * 49.22854 * 25 24 23 27 27 C 1.52995 * 109.49937 * 169.33604 * 25 24 23 28 28 C 1.53009 * 109.46929 * 184.99878 * 27 25 24 29 29 C 1.52332 * 123.27004 * 179.71878 * 20 19 18 30 30 H 1.07999 * 120.00099 * 179.97438 * 1 2 3 31 31 H 1.07995 * 120.00248 * 0.02562 * 1 2 3 32 32 H 1.08000 * 119.99788 * 179.97438 * 2 1 3 33 33 H 1.09004 * 109.46741 * 5.00151 * 3 2 1 34 34 H 1.08991 * 109.47120 * 244.99388 * 3 2 1 35 35 H 0.97003 * 119.99627 * 179.97438 * 10 9 7 36 36 H 1.08000 * 122.38542 * 0.02562 * 19 18 17 37 37 H 1.08999 * 109.59733 * 103.35065 * 23 21 20 38 38 H 1.09003 * 109.59289 * 223.82123 * 23 21 20 39 39 H 1.08993 * 109.55806 * 169.66856 * 24 23 21 40 40 H 1.09003 * 109.55923 * 289.87623 * 24 23 21 41 41 H 1.08997 * 109.47413 * 305.00080 * 27 25 24 42 42 H 1.09004 * 109.47106 * 65.00374 * 27 25 24 43 43 H 1.08994 * 109.46660 * 60.00303 * 28 27 25 44 44 H 1.08997 * 109.46951 * 180.02562 * 28 27 25 45 45 H 1.09000 * 109.46862 * 299.99936 * 28 27 25 46 46 H 1.09003 * 109.58313 * 282.63632 * 29 20 19 47 47 H 1.08997 * 109.58349 * 43.04099 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1316 5 6 2.7441 1.7911 2.3972 6 16 1.2272 2.4705 2.9821 7 6 1.6740 2.8267 4.6488 8 1 2.6705 2.6034 5.0003 9 6 0.7475 3.3942 5.5082 10 7 -0.4678 3.6671 5.0793 11 14 1.2214 3.7725 7.2750 12 1 1.7702 5.1500 7.3561 13 1 0.0213 3.6660 8.1430 14 1 2.2494 2.8024 7.7303 15 7 3.8494 1.6362 3.0936 16 7 4.7642 1.1115 2.3592 17 6 4.2988 0.8988 1.1447 18 6 5.0371 0.3140 0.0159 19 6 6.2117 -0.3596 0.1106 20 6 6.7257 -0.8224 -1.0902 21 6 5.9635 -0.5228 -2.1638 22 16 4.5373 0.3775 -1.6674 23 6 6.2947 -0.9100 -3.5905 24 6 7.7725 -1.3053 -3.6619 25 6 8.0725 -2.3131 -2.5484 26 1 7.3247 -3.1060 -2.5642 27 6 9.4618 -2.9160 -2.7660 28 6 9.7107 -4.0115 -1.7272 29 6 8.0345 -1.5944 -1.1968 30 1 -0.5400 -0.9353 -0.0004 31 1 -0.5400 0.9352 -0.0004 32 1 1.8500 -0.9353 0.0004 33 1 1.3585 2.1316 0.0896 34 1 2.6213 1.4026 -0.9313 35 1 -1.1167 4.0641 5.6812 36 1 6.7102 -0.5233 1.0546 37 1 5.6754 -1.7544 -3.8933 38 1 6.1105 -0.0630 -4.2514 39 1 7.9826 -1.7586 -4.6306 40 1 8.3939 -0.4193 -3.5312 41 1 9.5194 -3.3443 -3.7667 42 1 10.2166 -2.1368 -2.6603 43 1 8.9559 -4.7906 -1.8329 44 1 10.7006 -4.4407 -1.8819 45 1 9.6532 -3.5831 -0.7266 46 1 8.8738 -0.9033 -1.1184 47 1 8.0900 -2.3318 -0.3960 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000009944538.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:21 Heat of formation + Delta-G solvation = 95.832501 kcal Electronic energy + Delta-G solvation = -28384.669984 eV Core-core repulsion = 24592.743128 eV Total energy + Delta-G solvation = -3791.926856 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 375.113 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.95401 -39.56097 -36.28472 -35.92218 -33.39441 -32.70972 -32.39074 -30.98253 -29.57075 -28.03287 -26.64874 -25.73981 -24.60474 -24.01240 -22.37467 -21.81625 -21.16377 -20.22064 -19.76232 -18.18444 -17.96396 -17.50859 -16.43015 -15.77526 -15.47758 -15.27367 -15.09588 -14.95373 -14.65645 -14.61003 -14.34340 -14.09740 -13.54913 -13.30004 -13.22114 -13.08574 -12.93261 -12.68283 -12.37370 -12.17624 -11.90042 -11.78982 -11.47074 -11.45543 -11.33861 -11.16298 -11.12145 -11.06216 -10.91211 -10.73205 -10.63350 -10.43247 -10.23662 -9.89965 -9.87147 -9.67366 -9.49141 -9.14718 -8.90131 -8.42323 -8.11793 -6.75048 -6.50018 -4.24203 0.64541 1.38931 1.86316 2.00438 2.24019 2.50149 2.85076 3.19174 3.22406 3.29393 3.34796 3.64096 3.98802 4.30208 4.35606 4.49738 4.59156 4.72750 4.76232 4.82864 4.89353 4.94407 4.98516 5.02388 5.11859 5.14426 5.17207 5.24555 5.29015 5.44471 5.51009 5.53079 5.58567 5.63023 5.69203 5.71797 5.74101 5.81472 5.84682 5.85910 5.98559 6.13358 6.13741 6.30515 6.33858 6.52486 6.53812 6.57738 6.68860 7.25735 7.54768 8.34597 9.02362 9.36290 10.58083 Molecular weight = 375.11amu Principal moments of inertia in cm(-1) A = 0.016253 B = 0.002166 C = 0.001980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.338024 B =12922.910208 C =14136.021021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.183 4.183 3 C 0.142 3.858 4 N -0.474 5.474 5 C 0.181 3.819 6 S 0.146 5.854 7 C -0.533 4.533 8 H 0.106 0.894 9 C 0.075 3.925 10 N -0.878 5.878 11 Si 0.933 3.067 12 H -0.273 1.273 13 H -0.281 1.281 14 H -0.265 1.265 15 N -0.303 5.303 16 N -0.260 5.260 17 C 0.197 3.803 18 C -0.092 4.092 19 C -0.099 4.099 20 C -0.094 4.094 21 C -0.191 4.191 22 S 0.116 5.884 23 C -0.044 4.044 24 C -0.110 4.110 25 C -0.088 4.088 26 H 0.074 0.926 27 C -0.118 4.118 28 C -0.156 4.156 29 C -0.051 4.051 30 H 0.105 0.895 31 H 0.106 0.894 32 H 0.113 0.887 33 H 0.106 0.894 34 H 0.090 0.910 35 H 0.274 0.726 36 H 0.147 0.853 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.069 0.931 40 H 0.067 0.933 41 H 0.061 0.939 42 H 0.063 0.937 43 H 0.053 0.947 44 H 0.052 0.948 45 H 0.058 0.942 46 H 0.078 0.922 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.397 -11.633 -20.856 26.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.202 4.202 3 C 0.019 3.981 4 N -0.172 5.172 5 C -0.189 4.189 6 S 0.379 5.621 7 C -0.681 4.681 8 H 0.124 0.876 9 C -0.134 4.134 10 N -0.513 5.513 11 Si 0.758 3.242 12 H -0.199 1.199 13 H -0.207 1.207 14 H -0.190 1.190 15 N -0.149 5.149 16 N -0.103 5.103 17 C -0.070 4.070 18 C -0.212 4.212 19 C -0.132 4.132 20 C -0.106 4.106 21 C -0.309 4.309 22 S 0.383 5.617 23 C -0.083 4.083 24 C -0.149 4.149 25 C -0.106 4.106 26 H 0.093 0.907 27 C -0.156 4.156 28 C -0.213 4.213 29 C -0.090 4.090 30 H 0.123 0.877 31 H 0.124 0.876 32 H 0.131 0.869 33 H 0.124 0.876 34 H 0.108 0.892 35 H 0.084 0.916 36 H 0.164 0.836 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.088 0.912 40 H 0.086 0.914 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.072 0.928 44 H 0.071 0.929 45 H 0.077 0.923 46 H 0.096 0.904 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 9.773 -10.627 -20.869 25.377 hybrid contribution 1.508 -0.501 1.407 2.123 sum 11.281 -11.128 -19.462 25.097 Atomic orbital electron populations 1.23968 0.95364 1.02765 0.96599 1.22986 0.96412 0.97574 1.03241 1.20921 0.91919 0.98255 0.87029 1.46391 1.10365 1.49830 1.10570 1.28453 1.05141 1.02061 0.83237 1.83393 0.97747 1.68003 1.12943 1.23207 1.03447 1.47594 0.93873 0.87635 1.25059 0.94176 0.93906 1.00226 1.69981 1.03919 1.40444 1.36970 0.85908 0.78294 0.79251 0.80735 1.19894 1.20654 1.18974 1.74781 0.96803 1.19511 1.23798 1.74386 1.23720 1.13467 0.98710 1.21374 0.83322 1.07338 0.94989 1.21215 0.99605 1.07186 0.93180 1.20353 0.94726 0.98768 0.99372 1.19409 0.98275 1.01860 0.91082 1.25021 0.99439 1.07156 0.99314 1.83912 1.23513 1.55502 0.98731 1.20278 0.97045 1.01126 0.89887 1.21634 0.95207 0.99418 0.98612 1.21242 0.97399 0.97469 0.94526 0.90744 1.21579 0.96466 0.98281 0.99276 1.21829 1.01265 0.98659 0.99576 1.20662 0.93052 0.97712 0.97550 0.87669 0.87602 0.86918 0.87589 0.89185 0.91616 0.83552 0.90385 0.90614 0.91218 0.91387 0.91980 0.91862 0.92753 0.92917 0.92294 0.90405 0.90419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 14.32 29.01 0.42 -1.39 16 2 C -0.18 -2.51 9.85 -36.03 -0.35 -2.86 16 3 C 0.14 2.15 6.07 -5.19 -0.03 2.12 16 4 N -0.47 -9.36 2.83 -115.41 -0.33 -9.68 16 5 C 0.18 4.28 8.07 -87.74 -0.71 3.58 16 6 S 0.15 3.62 21.39 -107.50 -2.30 1.32 16 7 C -0.53 -14.92 9.36 30.84 0.29 -14.63 16 8 H 0.11 3.07 6.92 -52.48 -0.36 2.71 16 9 C 0.08 2.05 5.49 -17.49 -0.10 1.95 16 10 N -0.88 -24.28 13.22 55.48 0.73 -23.55 16 11 Si 0.93 21.33 29.55 -169.99 -5.02 16.30 16 12 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 13 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 14 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 15 N -0.30 -7.79 11.02 30.80 0.34 -7.45 16 16 N -0.26 -6.07 12.22 32.47 0.40 -5.67 16 17 C 0.20 3.93 7.87 -153.75 -1.21 2.72 16 18 C -0.09 -1.48 6.38 -36.92 -0.24 -1.71 16 19 C -0.10 -1.41 9.95 -40.35 -0.40 -1.82 16 20 C -0.09 -1.09 5.76 -104.83 -0.60 -1.70 16 21 C -0.19 -2.08 6.35 -35.05 -0.22 -2.30 16 22 S 0.12 1.44 20.15 -107.50 -2.17 -0.73 16 23 C -0.04 -0.34 6.25 -27.41 -0.17 -0.52 16 24 C -0.11 -0.73 5.24 -26.58 -0.14 -0.87 16 25 C -0.09 -0.62 2.15 -90.48 -0.19 -0.81 16 26 H 0.07 0.56 8.10 -51.93 -0.42 0.14 16 27 C -0.12 -0.69 5.39 -26.73 -0.14 -0.84 16 28 C -0.16 -0.93 9.68 37.16 0.36 -0.57 16 29 C -0.05 -0.44 4.96 -27.00 -0.13 -0.58 16 30 H 0.11 1.09 8.06 -52.49 -0.42 0.67 16 31 H 0.11 1.23 7.84 -52.49 -0.41 0.82 16 32 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 33 H 0.11 1.55 7.52 -51.93 -0.39 1.16 16 34 H 0.09 1.19 5.16 -45.03 -0.23 0.95 16 35 H 0.27 7.07 8.32 -40.82 -0.34 6.73 16 36 H 0.15 2.12 8.06 -52.49 -0.42 1.70 16 37 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.07 0.36 8.09 -51.93 -0.42 -0.06 16 40 H 0.07 0.48 8.10 -51.93 -0.42 0.06 16 41 H 0.06 0.33 8.11 -51.93 -0.42 -0.10 16 42 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 43 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 44 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 45 H 0.06 0.37 6.78 -51.93 -0.35 0.02 16 46 H 0.08 0.65 8.13 -51.93 -0.42 0.23 16 47 H 0.08 0.65 7.03 -51.93 -0.36 0.29 16 LS Contribution 409.81 15.07 6.18 6.18 Total: -1.00 -31.86 409.81 -12.49 -44.35 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -6.74 Total: -0.86 kcal Atomic # 6 Polarization: -16.64 SS G_CDS: -3.58 Total: -20.22 kcal Atomic # 7 Polarization: -47.49 SS G_CDS: 1.14 Total: -46.35 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: 5.06 SS G_CDS: -4.47 Total: 0.59 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -31.86 -12.49 -44.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000009944538.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.187 kcal (2) G-P(sol) polarization free energy of solvation -31.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.355 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds