Wall clock time and date at job start Tue Mar 31 2020 05:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46498 * 119.99651 * 2 1 4 4 C 1.50708 * 109.46768 * 269.99611 * 3 2 1 5 5 H 1.07995 * 120.00284 * 0.02562 * 4 3 2 6 6 C 1.37881 * 119.99703 * 180.02562 * 4 3 2 7 7 N 1.31508 * 119.99903 * 180.02562 * 6 4 3 8 8 Si 1.86803 * 120.00176 * 359.97438 * 6 4 3 9 9 H 1.48501 * 109.46864 * 90.00014 * 8 6 4 10 10 H 1.48495 * 109.47254 * 210.00173 * 8 6 4 11 11 H 1.48503 * 109.47101 * 330.00330 * 8 6 4 12 12 C 1.34775 * 120.00244 * 179.97438 * 2 1 3 13 13 O 1.21615 * 120.00156 * 184.57772 * 12 2 1 14 14 C 1.47290 * 119.99788 * 4.58359 * 12 2 1 15 15 C 1.37968 * 126.80882 * 321.84419 * 14 12 2 16 16 N 1.34159 * 107.88383 * 180.02562 * 15 14 12 17 17 C 1.46506 * 125.15551 * 180.02562 * 16 15 14 18 18 C 1.50701 * 109.47047 * 124.99817 * 17 16 15 19 19 C 1.38234 * 120.00032 * 89.99396 * 18 17 16 20 20 C 1.38239 * 120.00166 * 180.27650 * 19 18 17 21 21 C 1.38239 * 119.99556 * 359.49170 * 20 19 18 22 22 C 1.38234 * 120.00083 * 0.50829 * 21 20 19 23 23 C 1.38230 * 120.00028 * 270.01863 * 18 17 16 24 24 N 1.39767 * 109.68004 * 0.25739 * 16 15 14 25 25 C 1.31367 * 109.07413 * 359.55372 * 24 16 15 26 26 C 1.48298 * 126.50992 * 180.16288 * 25 24 16 27 27 C 1.39379 * 120.12713 * 145.05279 * 26 25 24 28 28 C 1.38001 * 119.87199 * 179.69583 * 27 26 25 29 29 C 1.38328 * 120.12629 * 0.59219 * 28 27 26 30 30 C 1.38332 * 120.25309 * 359.67865 * 29 28 27 31 31 C 1.38004 * 120.12333 * 0.02562 * 30 29 28 32 32 H 1.08996 * 109.47458 * 264.76248 * 1 2 3 33 33 H 1.09003 * 109.47152 * 24.76882 * 1 2 3 34 34 H 1.09000 * 109.46686 * 144.76301 * 1 2 3 35 35 H 1.08995 * 109.47279 * 29.99579 * 3 2 1 36 36 H 1.09000 * 109.47345 * 150.00030 * 3 2 1 37 37 H 0.97001 * 120.00241 * 179.97438 * 7 6 4 38 38 H 1.07995 * 126.05615 * 0.06901 * 15 14 12 39 39 H 1.08993 * 109.47404 * 4.99142 * 17 16 15 40 40 H 1.09001 * 109.46551 * 244.99460 * 17 16 15 41 41 H 1.07998 * 120.00187 * 0.02562 * 19 18 17 42 42 H 1.07997 * 120.00274 * 179.72749 * 20 19 18 43 43 H 1.07999 * 119.99740 * 180.23811 * 21 20 19 44 44 H 1.07997 * 120.00113 * 179.72415 * 22 21 20 45 45 H 1.08005 * 119.99712 * 359.97438 * 23 18 17 46 46 H 1.07998 * 120.06291 * 359.96898 * 27 26 25 47 47 H 1.08003 * 119.94037 * 180.29331 * 28 27 26 48 48 H 1.08007 * 119.87930 * 179.70012 * 29 28 27 49 49 H 1.07995 * 119.94077 * 180.02562 * 30 29 28 50 50 H 1.08001 * 120.06432 * 180.02562 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7037 -1.4209 5 1 2.0975 1.0961 -2.2418 6 6 3.1269 2.8774 -1.6729 7 7 3.3456 3.2573 -2.9128 8 14 3.7337 3.9288 -0.2531 9 1 5.1068 3.5070 0.1236 10 1 3.7496 5.3554 -0.6650 11 1 2.8271 3.7597 0.9109 12 6 2.1390 -1.1672 0.0005 13 8 3.3522 -1.1688 0.0846 14 6 1.4061 -2.4407 -0.1008 15 6 0.1965 -2.7475 0.4876 16 7 -0.1203 -4.0057 0.1465 17 6 -1.3319 -4.7141 0.5668 18 6 -2.0660 -5.2185 -0.6489 19 6 -1.7855 -6.4743 -1.1540 20 6 -2.4547 -6.9348 -2.2725 21 6 -3.4120 -6.1436 -2.8796 22 6 -3.6926 -4.8878 -2.3744 23 6 -3.0195 -4.4253 -1.2591 24 7 0.8835 -4.5400 -0.6661 25 6 1.8174 -3.6340 -0.8466 26 6 3.0558 -3.7906 -1.6472 27 6 3.5708 -2.7081 -2.3582 28 6 4.7271 -2.8581 -3.0965 29 6 5.3680 -4.0832 -3.1416 30 6 4.8583 -5.1625 -2.4425 31 6 3.7061 -5.0226 -1.6960 32 1 -0.3634 -0.0938 1.0233 33 1 -0.3633 0.9331 -0.4306 34 1 -0.3633 -0.8394 -0.5929 35 1 1.6084 2.0284 0.5137 36 1 3.1499 1.1385 0.5138 37 1 3.8224 4.0832 -3.0901 38 1 -0.3915 -2.0908 1.1116 39 1 -1.9759 -4.0336 1.1237 40 1 -1.0583 -5.5568 1.2016 41 1 -1.0405 -7.0941 -0.6773 42 1 -2.2324 -7.9141 -2.6698 43 1 -3.9377 -6.5049 -3.7511 44 1 -4.4373 -4.2679 -2.8514 45 1 -3.2386 -3.4441 -0.8644 46 1 3.0685 -1.7526 -2.3278 47 1 5.1297 -2.0188 -3.6440 48 1 6.2700 -4.1974 -3.7246 49 1 5.3630 -6.1165 -2.4809 50 1 3.3092 -5.8658 -1.1502 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000011922042.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:38 Heat of formation + Delta-G solvation = 106.763081 kcal Electronic energy + Delta-G solvation = -33578.403954 eV Core-core repulsion = 29344.587356 eV Total energy + Delta-G solvation = -4233.816598 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 375.169 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.17694 -39.47023 -38.55378 -38.45113 -34.87674 -34.33766 -32.58428 -31.90878 -31.18712 -30.71917 -30.26189 -29.77707 -28.13389 -26.50274 -25.84050 -23.51242 -22.86900 -22.75684 -22.28777 -21.55317 -20.98424 -19.79127 -18.77296 -17.22113 -16.92959 -16.91059 -16.37226 -16.05857 -15.86598 -15.42733 -15.17554 -15.03338 -14.81310 -14.42363 -14.35679 -13.87031 -13.71622 -13.70062 -13.22845 -13.11125 -13.02081 -12.96152 -12.82438 -12.61230 -12.36370 -12.27506 -12.15278 -11.87283 -11.50861 -11.46622 -11.31334 -11.02401 -10.94811 -10.86968 -10.58713 -10.46125 -10.14010 -9.70276 -9.52982 -9.22500 -9.18043 -9.03036 -8.58199 -8.57487 -8.54002 -8.04071 -7.64585 -6.06805 -4.05417 0.90719 1.14338 1.27341 1.77509 1.79171 2.40207 2.64010 3.30968 3.36848 3.39306 3.54345 3.67100 3.99572 4.17665 4.20862 4.37467 4.41588 4.55396 4.66246 4.70465 4.79882 4.83163 4.97893 5.15592 5.21704 5.23437 5.28064 5.31400 5.35582 5.46287 5.53546 5.63624 5.64513 5.64967 5.74922 5.76825 5.78493 5.94835 6.14214 6.15350 6.18046 6.23014 6.24953 6.38038 6.43226 6.68730 6.71984 6.75516 6.83527 6.87545 6.95329 7.00544 7.28924 7.39170 7.62952 7.68111 8.30339 8.49435 8.95920 9.07335 9.53865 11.06388 Molecular weight = 375.17amu Principal moments of inertia in cm(-1) A = 0.008185 B = 0.003021 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3420.260914 B = 9265.252208 C =11246.052322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.594 5.594 3 C 0.217 3.783 4 C -0.528 4.528 5 H 0.075 0.925 6 C 0.073 3.927 7 N -0.897 5.897 8 Si 0.875 3.125 9 H -0.273 1.273 10 H -0.286 1.286 11 H -0.266 1.266 12 C 0.583 3.417 13 O -0.531 6.531 14 C -0.257 4.257 15 C 0.085 3.915 16 N -0.365 5.365 17 C 0.175 3.825 18 C -0.111 4.111 19 C -0.082 4.082 20 C -0.124 4.124 21 C -0.110 4.110 22 C -0.124 4.124 23 C -0.098 4.098 24 N -0.278 5.278 25 C 0.163 3.837 26 C -0.017 4.017 27 C -0.058 4.058 28 C -0.117 4.117 29 C -0.112 4.112 30 C -0.134 4.134 31 C -0.093 4.093 32 H 0.041 0.959 33 H 0.077 0.923 34 H 0.061 0.939 35 H 0.029 0.971 36 H 0.039 0.961 37 H 0.264 0.736 38 H 0.184 0.816 39 H 0.106 0.894 40 H 0.094 0.906 41 H 0.124 0.876 42 H 0.123 0.877 43 H 0.122 0.878 44 H 0.124 0.876 45 H 0.123 0.877 46 H 0.130 0.870 47 H 0.128 0.872 48 H 0.120 0.880 49 H 0.120 0.880 50 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.201 -19.959 4.690 24.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.326 5.326 3 C 0.096 3.904 4 C -0.567 4.567 5 H 0.093 0.907 6 C -0.129 4.129 7 N -0.535 5.535 8 Si 0.702 3.298 9 H -0.199 1.199 10 H -0.212 1.212 11 H -0.191 1.191 12 C 0.370 3.630 13 O -0.408 6.408 14 C -0.272 4.272 15 C -0.061 4.061 16 N -0.145 5.145 17 C 0.054 3.946 18 C -0.111 4.111 19 C -0.100 4.100 20 C -0.142 4.142 21 C -0.129 4.129 22 C -0.142 4.142 23 C -0.117 4.117 24 N -0.097 5.097 25 C -0.005 4.005 26 C -0.019 4.019 27 C -0.078 4.078 28 C -0.135 4.135 29 C -0.131 4.131 30 C -0.152 4.152 31 C -0.112 4.112 32 H 0.060 0.940 33 H 0.095 0.905 34 H 0.079 0.921 35 H 0.047 0.953 36 H 0.057 0.943 37 H 0.074 0.926 38 H 0.201 0.799 39 H 0.124 0.876 40 H 0.112 0.888 41 H 0.142 0.858 42 H 0.141 0.859 43 H 0.140 0.860 44 H 0.142 0.858 45 H 0.141 0.859 46 H 0.148 0.852 47 H 0.146 0.854 48 H 0.138 0.862 49 H 0.138 0.862 50 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -13.024 -21.029 4.462 25.135 hybrid contribution 0.368 1.609 0.795 1.832 sum -12.656 -19.420 5.257 23.768 Atomic orbital electron populations 1.21809 0.81552 1.03415 0.99550 1.47689 1.05999 1.06840 1.72060 1.19677 0.92572 0.79750 0.98389 1.21334 1.36889 1.07180 0.91257 0.90715 1.24839 0.95241 0.97319 0.95493 1.69893 1.41489 1.23545 1.18607 0.86875 0.80212 0.79733 0.83017 1.19865 1.21164 1.19083 1.17100 0.86667 0.82026 0.77213 1.90772 1.13269 1.86893 1.49831 1.21509 0.98032 0.97306 1.10319 1.23085 0.96125 0.87202 0.99731 1.48193 1.17119 1.10190 1.38989 1.20611 0.81974 0.97815 0.94183 1.19768 0.97876 0.95339 0.98152 1.21036 0.97897 0.95245 0.95866 1.21164 0.96758 1.00185 0.96125 1.21231 0.97627 0.94502 0.99506 1.21142 1.00280 0.96254 0.96519 1.21064 0.95744 0.99042 0.95844 1.77267 0.98311 1.21135 1.13023 1.21771 0.93355 0.89812 0.95570 1.17650 0.92109 0.94458 0.97693 1.21293 0.95293 0.97842 0.93366 1.21128 0.95355 0.97541 0.99483 1.21210 0.99593 0.93134 0.99119 1.20939 0.96678 0.98818 0.98728 1.21057 0.95371 0.95984 0.98804 0.94027 0.90459 0.92060 0.95284 0.94307 0.92602 0.79896 0.87550 0.88807 0.85818 0.85906 0.86014 0.85836 0.85943 0.85181 0.85447 0.86222 0.86211 0.86172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.23 9.05 59.85 0.54 1.78 16 2 N -0.59 -12.35 2.86 -184.28 -0.53 -12.88 16 3 C 0.22 5.27 4.24 -5.19 -0.02 5.25 16 4 C -0.53 -14.99 9.94 -34.43 -0.34 -15.33 16 5 H 0.07 2.33 8.06 -52.49 -0.42 1.90 16 6 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 7 N -0.90 -27.38 13.96 55.43 0.77 -26.60 16 8 Si 0.87 21.47 27.47 -169.99 -4.67 16.80 16 9 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.27 -6.14 6.54 56.52 0.37 -5.77 16 12 C 0.58 12.51 6.31 -12.58 -0.08 12.43 16 13 O -0.53 -13.40 15.02 5.26 0.08 -13.32 16 14 C -0.26 -4.56 5.48 -102.95 -0.56 -5.12 16 15 C 0.08 1.11 9.13 -16.63 -0.15 0.96 16 16 N -0.36 -4.52 3.62 -62.03 -0.22 -4.75 16 17 C 0.17 1.43 6.58 -5.19 -0.03 1.39 16 18 C -0.11 -1.02 5.29 -104.63 -0.55 -1.58 16 19 C -0.08 -0.77 9.70 -39.58 -0.38 -1.15 16 20 C -0.12 -1.09 10.05 -39.58 -0.40 -1.49 16 21 C -0.11 -0.93 10.05 -39.58 -0.40 -1.33 16 22 C -0.12 -1.07 10.05 -39.58 -0.40 -1.47 16 23 C -0.10 -0.88 9.70 -39.58 -0.38 -1.26 16 24 N -0.28 -4.33 12.28 34.58 0.42 -3.91 16 25 C 0.16 2.91 6.94 -80.56 -0.56 2.35 16 26 C -0.02 -0.31 5.72 -104.91 -0.60 -0.91 16 27 C -0.06 -1.14 8.26 -39.24 -0.32 -1.46 16 28 C -0.12 -2.01 10.03 -39.64 -0.40 -2.41 16 29 C -0.11 -1.62 10.04 -39.51 -0.40 -2.01 16 30 C -0.13 -1.85 10.03 -39.63 -0.40 -2.24 16 31 C -0.09 -1.44 9.76 -39.24 -0.38 -1.82 16 32 H 0.04 0.49 7.34 -51.93 -0.38 0.10 16 33 H 0.08 1.21 8.03 -51.93 -0.42 0.79 16 34 H 0.06 0.86 5.93 -51.93 -0.31 0.55 16 35 H 0.03 0.67 7.13 -51.93 -0.37 0.30 16 36 H 0.04 1.01 6.79 -51.93 -0.35 0.66 16 37 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 38 H 0.18 1.72 6.35 -52.49 -0.33 1.39 16 39 H 0.11 0.54 7.99 -51.93 -0.41 0.12 16 40 H 0.09 0.64 8.09 -51.93 -0.42 0.22 16 41 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 42 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 43 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 44 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 45 H 0.12 0.90 8.06 -52.48 -0.42 0.47 16 46 H 0.13 2.91 6.70 -52.49 -0.35 2.56 16 47 H 0.13 2.09 8.06 -52.48 -0.42 1.67 16 48 H 0.12 1.38 8.06 -52.48 -0.42 0.96 16 49 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 50 H 0.12 1.67 8.06 -52.49 -0.42 1.25 16 LS Contribution 421.02 15.07 6.34 6.34 Total: -1.00 -36.62 421.02 -10.87 -47.49 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -6.74 Total: 4.25 kcal Atomic # 6 Polarization: -7.11 SS G_CDS: -6.32 Total: -13.43 kcal Atomic # 7 Polarization: -48.58 SS G_CDS: 0.45 Total: -48.13 kcal Atomic # 8 Polarization: -13.40 SS G_CDS: 0.08 Total: -13.32 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.67 Total: 16.80 kcal Total LS contribution 6.34 Total: 6.34 kcal Total: -36.62 -10.87 -47.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000011922042.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.252 kcal (2) G-P(sol) polarization free energy of solvation -36.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds