Wall clock time and date at job start Tue Mar 31 2020 05:57:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 N 1.46491 * 109.46957 * 179.72213 * 9 7 2 11 11 C 1.36038 * 126.35290 * 90.02108 * 10 9 7 12 12 C 1.50698 * 124.94791 * 0.02562 * 11 10 9 13 13 O 1.42903 * 109.47053 * 89.99711 * 12 11 10 14 14 C 1.35952 * 116.99896 * 179.97438 * 13 12 11 15 15 C 1.38698 * 120.04426 * 359.72851 * 14 13 12 16 16 C 1.38156 * 119.96519 * 179.67415 * 15 14 13 17 17 C 1.38375 * 120.06267 * 0.61956 * 16 15 14 18 18 Cl 1.73602 * 119.95410 * 179.69575 * 17 16 15 19 19 C 1.38345 * 120.09454 * 359.67881 * 17 16 15 20 20 C 1.38251 * 120.03125 * 359.97438 * 19 17 16 21 21 Cl 1.73599 * 120.03568 * 180.02562 * 20 19 17 22 22 N 1.30109 * 110.10171 * 179.97438 * 11 10 9 23 23 C 1.35781 * 109.64476 * 0.02562 * 22 11 10 24 24 C 1.39746 * 133.60012 * 180.02562 * 23 22 11 25 25 C 1.36604 * 119.88530 * 179.97438 * 24 23 22 26 26 C 1.38781 * 120.66657 * 0.02562 * 25 24 23 27 27 C 1.37848 * 120.45535 * 0.02562 * 26 25 24 28 28 C 1.38058 * 126.34644 * 269.71068 * 10 9 7 29 29 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 31 31 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 32 32 H 1.09000 * 109.47119 * 209.99686 * 12 11 10 33 33 H 1.09002 * 109.47388 * 330.00165 * 12 11 10 34 34 H 1.07995 * 120.01571 * 359.97438 * 15 14 13 35 35 H 1.07998 * 119.96584 * 180.31852 * 16 15 14 36 36 H 1.08006 * 119.98727 * 180.02562 * 19 17 16 37 37 H 1.07993 * 120.05565 * 359.93219 * 24 23 22 38 38 H 1.08000 * 119.66571 * 180.02562 * 25 24 23 39 39 H 1.08001 * 119.77152 * 179.97438 * 26 25 24 40 40 H 1.07999 * 120.15950 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 7 2.2028 -3.6127 -0.0102 11 6 2.7264 -4.2307 1.0827 12 6 2.4115 -3.8706 2.5117 13 8 1.2882 -4.6325 2.9585 14 6 0.8715 -4.4266 4.2361 15 6 1.5340 -3.5144 5.0441 16 6 1.1050 -3.3014 6.3400 17 6 0.0231 -4.0067 6.8367 18 17 -0.5086 -3.7427 8.4681 19 6 -0.6357 -4.9218 6.0351 20 6 -0.2142 -5.1327 4.7354 21 17 -1.0412 -6.2804 3.7292 22 7 3.5378 -5.1788 0.7144 23 6 3.5907 -5.2334 -0.6412 24 6 4.2839 -6.0409 -1.5469 25 6 4.1254 -5.8486 -2.8900 26 6 3.2810 -4.8565 -3.3682 27 6 2.5879 -4.0474 -2.4934 28 6 2.7304 -4.2333 -1.1249 29 1 -0.4850 0.8401 -0.0004 30 1 0.6242 -2.5609 0.8844 31 1 0.6244 -2.5529 -0.8956 32 1 3.2739 -4.0917 3.1406 33 1 2.1781 -2.8077 2.5756 34 1 2.3816 -2.9673 4.6588 35 1 1.6176 -2.5874 6.9674 36 1 -1.4802 -5.4710 6.4245 37 1 4.9444 -6.8152 -1.1856 38 1 4.6625 -6.4750 -3.5868 39 1 3.1667 -4.7168 -4.4330 40 1 1.9318 -3.2770 -2.8708 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000012360413.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:28 Heat of formation + Delta-G solvation = 44.982843 kcal Electronic energy + Delta-G solvation = -28264.501712 eV Core-core repulsion = 24096.897585 eV Total energy + Delta-G solvation = -4167.604126 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 376.049 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.64700 -40.32666 -37.99406 -36.91775 -36.65425 -36.15331 -34.25801 -32.46207 -31.28583 -30.79920 -29.94004 -29.28852 -27.36029 -26.86390 -23.50542 -23.32443 -22.62578 -21.63278 -21.39071 -19.47031 -18.63426 -17.09211 -16.96734 -16.87873 -16.59339 -16.18413 -15.62337 -15.18119 -14.94180 -14.71313 -14.53083 -14.23421 -13.81099 -13.75257 -13.49794 -13.35614 -12.80087 -12.62329 -12.49245 -12.43072 -11.97244 -11.70061 -11.66245 -11.46411 -11.39654 -11.20821 -11.06627 -11.01160 -10.92262 -10.88901 -10.74196 -10.41321 -10.29201 -9.48720 -9.43773 -9.17993 -8.81402 -8.27285 -7.85004 -7.56177 -6.43311 -4.54608 0.83271 0.92404 1.30595 1.75774 2.02780 2.20774 2.67581 3.10166 3.16324 3.17001 3.25778 3.35629 3.70366 4.13325 4.32685 4.34823 4.55437 4.61938 4.79172 4.89873 4.97174 5.09764 5.18865 5.28748 5.35539 5.39124 5.47704 5.54027 5.81931 5.83878 5.88298 5.90469 5.93235 6.12427 6.18765 6.36530 6.72055 6.79715 6.89784 6.99818 7.08801 7.21689 7.34502 7.46857 7.66476 7.79421 8.37132 8.52509 9.14449 10.63643 Molecular weight = 376.05amu Principal moments of inertia in cm(-1) A = 0.007691 B = 0.003114 C = 0.002449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3639.660407 B = 8989.096279 C =11429.595376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.071 3.929 3 Si 0.904 3.096 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.551 4.551 8 H 0.065 0.935 9 C 0.235 3.765 10 N -0.441 5.441 11 C 0.272 3.728 12 C 0.142 3.858 13 O -0.290 6.290 14 C 0.160 3.840 15 C -0.185 4.185 16 C -0.061 4.061 17 C -0.068 4.068 18 Cl -0.066 7.066 19 C -0.064 4.064 20 C -0.060 4.060 21 Cl -0.044 7.044 22 N -0.491 5.491 23 C 0.037 3.963 24 C -0.070 4.070 25 C -0.137 4.137 26 C -0.117 4.117 27 C -0.092 4.092 28 C 0.061 3.939 29 H 0.271 0.729 30 H 0.052 0.948 31 H 0.050 0.950 32 H 0.096 0.904 33 H 0.102 0.898 34 H 0.151 0.849 35 H 0.143 0.857 36 H 0.148 0.852 37 H 0.121 0.879 38 H 0.121 0.879 39 H 0.123 0.877 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.262 -8.234 8.744 12.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.134 4.134 3 Si 0.731 3.269 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.198 1.198 7 C -0.589 4.589 8 H 0.083 0.917 9 C 0.117 3.883 10 N -0.125 5.125 11 C 0.006 3.994 12 C 0.066 3.934 13 O -0.201 6.201 14 C 0.112 3.888 15 C -0.204 4.204 16 C -0.080 4.080 17 C -0.095 4.095 18 Cl -0.037 7.037 19 C -0.083 4.083 20 C -0.088 4.088 21 Cl -0.015 7.015 22 N -0.214 5.214 23 C -0.084 4.084 24 C -0.090 4.090 25 C -0.157 4.157 26 C -0.137 4.137 27 C -0.113 4.113 28 C -0.052 4.052 29 H 0.081 0.919 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.114 0.886 33 H 0.120 0.880 34 H 0.168 0.832 35 H 0.160 0.840 36 H 0.166 0.834 37 H 0.139 0.861 38 H 0.139 0.861 39 H 0.141 0.859 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 1.191 -8.685 9.214 12.718 hybrid contribution -0.140 1.696 -0.488 1.770 sum 1.052 -6.989 8.726 11.229 Atomic orbital electron populations 1.69912 1.06083 1.28089 1.47967 1.24929 0.94931 0.99493 0.94017 0.86438 0.79521 0.81818 0.79132 1.19812 1.20788 1.19807 1.21241 0.93638 0.89538 1.54462 0.91681 1.19808 0.86884 0.81435 1.00175 1.45951 1.35351 1.27705 1.03533 1.22285 0.95049 0.92499 0.89523 1.20992 0.88103 0.96428 0.87926 1.86228 1.47319 1.61963 1.24610 1.18725 0.92271 0.93307 0.84543 1.21280 1.03312 1.01253 0.94548 1.20927 0.94342 0.97684 0.95012 1.20536 0.99461 1.02008 0.87517 1.98367 1.89968 1.95919 1.19471 1.20690 0.99782 0.97216 0.90658 1.19965 0.96938 0.99156 0.92757 1.98391 1.77118 1.57652 1.68300 1.70258 1.20932 1.19140 1.11028 1.19043 1.00631 0.98680 0.90065 1.19854 0.99080 0.98505 0.91522 1.20494 1.00862 0.99723 0.94655 1.20771 0.97888 0.96248 0.98840 1.20092 1.01399 1.00571 0.89227 1.18947 0.99689 0.96753 0.89846 0.91942 0.92997 0.93204 0.88573 0.88006 0.83164 0.83958 0.83414 0.86103 0.86092 0.85900 0.85763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.46 13.29 55.43 0.74 -22.72 16 2 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 3 Si 0.90 19.73 29.54 -169.99 -5.02 14.71 16 4 H -0.27 -5.98 7.11 56.52 0.40 -5.57 16 5 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 6 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 7 C -0.55 -13.88 9.39 -34.44 -0.32 -14.21 16 8 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 9 C 0.24 5.57 5.48 -5.20 -0.03 5.54 16 10 N -0.44 -9.62 2.79 -112.44 -0.31 -9.93 16 11 C 0.27 5.48 7.48 -154.82 -1.16 4.32 16 12 C 0.14 2.34 4.81 36.00 0.17 2.51 16 13 O -0.29 -4.89 9.58 -19.59 -0.19 -5.07 16 14 C 0.16 2.30 6.68 -39.20 -0.26 2.04 16 15 C -0.18 -2.22 9.04 -39.44 -0.36 -2.58 16 16 C -0.06 -0.65 9.82 -39.56 -0.39 -1.04 16 17 C -0.07 -0.75 6.32 -39.49 -0.25 -1.00 16 18 Cl -0.07 -0.65 28.95 -51.86 -1.50 -2.15 16 19 C -0.06 -0.73 9.61 -39.54 -0.38 -1.11 16 20 C -0.06 -0.82 6.33 -39.37 -0.25 -1.07 16 21 Cl -0.04 -0.62 28.50 -51.86 -1.48 -2.09 16 22 N -0.49 -10.10 11.27 -8.23 -0.09 -10.20 16 23 C 0.04 0.74 7.23 -84.70 -0.61 0.13 16 24 C -0.07 -1.15 10.05 -39.61 -0.40 -1.55 16 25 C -0.14 -1.96 9.96 -39.97 -0.40 -2.36 16 26 C -0.12 -1.77 10.03 -39.52 -0.40 -2.16 16 27 C -0.09 -1.70 10.05 -39.50 -0.40 -2.10 16 28 C 0.06 1.27 6.88 -83.98 -0.58 0.69 16 29 H 0.27 6.83 8.31 -40.82 -0.34 6.50 16 30 H 0.05 1.27 7.61 -51.93 -0.40 0.87 16 31 H 0.05 1.25 8.14 -51.93 -0.42 0.82 16 32 H 0.10 1.31 7.65 -51.93 -0.40 0.91 16 33 H 0.10 1.68 7.18 -51.93 -0.37 1.31 16 34 H 0.15 1.57 6.30 -52.49 -0.33 1.24 16 35 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 36 H 0.15 1.41 8.06 -52.48 -0.42 0.98 16 37 H 0.12 1.72 8.06 -52.49 -0.42 1.30 16 38 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 39 H 0.12 1.47 8.06 -52.49 -0.42 1.04 16 40 H 0.12 2.25 8.06 -52.49 -0.42 1.83 16 LS Contribution 381.21 15.07 5.74 5.74 Total: -1.00 -28.71 381.21 -12.21 -40.92 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -4.00 Total: 3.02 kcal Atomic # 6 Polarization: -6.13 SS G_CDS: -6.10 Total: -12.23 kcal Atomic # 7 Polarization: -43.18 SS G_CDS: 0.33 Total: -42.85 kcal Atomic # 8 Polarization: -4.89 SS G_CDS: -0.19 Total: -5.07 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -5.02 Total: 14.71 kcal Atomic # 17 Polarization: -1.27 SS G_CDS: -2.98 Total: -4.25 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -28.71 -12.21 -40.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012360413.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.902 kcal (2) G-P(sol) polarization free energy of solvation -28.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds